Ggra10809.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10809.t1
Unique NameGgra10809.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:15280..17404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog290400.Jann_3673
Max annot lvl28211|Alphaproteobacteria
Evalue4.36e-05
EggNOG OGs2DVSI@1|root,33WZN@2|Bacteria,1NK4P@1224|Proteobacteria,2UW3G@28211|Alphaproteobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10809Ggra10809Gracilaria gracilis GNS1m malegenetig00000192_pilon 15280..17404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10809.t1Ggra10809.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 15280..17404 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10809.t1.stop1Ggra10809.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 15280..15282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10809.t1.CDS1Ggra10809.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 15280..16130 -
Ggra10809.t1.CDS2Ggra10809.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000192_pilon 16352..16416 -
Ggra10809.t1.CDS3Ggra10809.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000192_pilon 17337..17404 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10809.t1.exon1Ggra10809.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 15280..16130 -
Ggra10809.t1.exon2Ggra10809.t1.exon2Gracilaria gracilis GNS1m maleexontig00000192_pilon 16352..16416 -
Ggra10809.t1.exon3Ggra10809.t1.exon3Gracilaria gracilis GNS1m maleexontig00000192_pilon 17337..17404 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10809.t1.intron1Ggra10809.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000192_pilon 16131..16351 -
Ggra10809.t1.intron2Ggra10809.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000192_pilon 16417..17336 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10809.t1.start1Ggra10809.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 17402..17404 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10809.t1 ID=Ggra10809.t1|Name=Ggra10809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=328bp
MSSGAELLMAWEVDAEDAKYIMRAELRYISPQHLKLVLFGSNTRPSFFSI
DGHVTHGVNSFNNKLVVNFSSSSLIFSSFPPLAEIGVRNPSGANASLITD
STPLFSQMATIDAFDFQTFLMLPPGVGPFNVPIAETPTFNLVSANITDRS
TPFFFEDSIDPAILGQSYLSSMADANITLREWNKAASRLSGVCREGKARV
RVQLQNALPNGLYTLWDVGVVSPLTTNETVTVGPFGGIPNVLATDEWGRA
SIVRDLNYCPFDKCIGAVRCTLSVSLNYHFDHVIFGGAPTLDFAGLAAGH
VAANQMAIYPNGDFIITPQNKFRSFRW*
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spliced messenger RNA

>Ggra10809.t1 ID=Ggra10809.t1|Name=Ggra10809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00000192_pilon:15280..17404- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCGGGAGCAGAATTGCTTATGGCTTGGGAGGTCGATGCGGAAGA
TGCAAAGTACATCATGCGGGCTGAGCTGAGATATATATCTCCCCAACACC
TGAAGCTGGTTTTGTTCGGTTCAAATACGAGACCCTCGTTCTTTTCGATA
GACGGTCATGTTACACATGGTGTCAACAGCTTCAATAACAAACTAGTCGT
GAACTTTTCTTCATCCTCGTTGATATTTTCATCATTTCCACCTCTTGCCG
AGATCGGAGTCAGAAACCCATCCGGGGCAAATGCCTCGCTTATCACGGAT
TCCACGCCGCTCTTTTCCCAAATGGCCACCATAGATGCGTTTGACTTTCA
AACGTTTTTGATGCTTCCCCCCGGTGTGGGACCTTTCAACGTTCCTATCG
CAGAAACGCCGACCTTCAATCTCGTTTCCGCCAACATAACTGATCGCTCT
ACTCCATTCTTCTTCGAAGATTCCATTGATCCAGCCATCTTAGGACAATC
TTACCTTTCGAGCATGGCAGATGCAAACATCACTTTAAGAGAGTGGAACA
AAGCAGCTTCACGTCTTTCGGGAGTGTGTCGCGAAGGCAAAGCAAGGGTA
AGAGTGCAGCTGCAAAATGCACTTCCAAATGGGCTGTACACTTTGTGGGA
CGTAGGAGTGGTGTCGCCTTTGACTACTAATGAAACAGTCACGGTTGGTC
CGTTTGGGGGGATACCAAACGTGCTAGCCACCGATGAATGGGGCCGTGCT
TCTATAGTTCGAGATTTGAATTACTGCCCATTTGACAAATGTATTGGCGC
TGTGCGATGTACGCTATCAGTTTCGTTGAATTATCACTTTGATCACGTAA
TCTTTGGCGGAGCACCGACTCTTGACTTTGCTGGATTGGCGGCTGGACAT
GTTGCAGCGAATCAGATGGCAATATATCCAAACGGTGACTTCATAATCAC
GCCTCAAAACAAATTCCGCTCCTTCCGTTGGTAG
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protein sequence of Ggra10809.t1

>Ggra10809.t1 ID=Ggra10809.t1|Name=Ggra10809.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=328bp
MSSGAELLMAWEVDAEDAKYIMRAELRYISPQHLKLVLFGSNTRPSFFSI
DGHVTHGVNSFNNKLVVNFSSSSLIFSSFPPLAEIGVRNPSGANASLITD
STPLFSQMATIDAFDFQTFLMLPPGVGPFNVPIAETPTFNLVSANITDRS
TPFFFEDSIDPAILGQSYLSSMADANITLREWNKAASRLSGVCREGKARV
RVQLQNALPNGLYTLWDVGVVSPLTTNETVTVGPFGGIPNVLATDEWGRA
SIVRDLNYCPFDKCIGAVRCTLSVSLNYHFDHVIFGGAPTLDFAGLAAGH
VAANQMAIYPNGDFIITPQNKFRSFRW*
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mRNA from alignment at tig00000192_pilon:15280..17404-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10809.t1 ID=Ggra10809.t1|Name=Ggra10809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2125bp|location=Sequence derived from alignment at tig00000192_pilon:15280..17404- (Gracilaria gracilis GNS1m male)
ATGTCATCGGGAGCAGAATTGCTTATGGCTTGGGAGGTCGATGCGGAAGA
TGCAAAGTACATCATGCGGTAACACTTCACCCTGGCAAGCCGTAAGTTGC
GACAAAGGTTTCCAAATGGCAAGTGAGCACAATCGTTTAGGCGGGCAGCA
TAAGATGTAATCGCTGAAATGGAACCACTGAAAATTAGATACCTGACGCT
AAGGTTGCTCACTGCTCCTCTGTTTATACTATGGGATATGGCGACCTCAG
CATGCCTCGCACCATATGATACCCATTACAAACATTCAGCTCACGAAGTC
CATGGCCATCGATAGCCCAACGCATGTTTGCACCAATGTAGCTGAGCTCA
CTCTCGTCCTATGAGTAAAGTTATTCAGGCTTGTAACGTGCCCCCCAGCT
GTTCTGATGGATTTCCTTTCCACTGCATCACTATTTGCACTATATCTGCA
TAAAGTGGAAACCATGGTTCACGTTTGTGACTAACCTTACCACAGCAGGA
CAGTAGGAAGACTAACTTTCTTTCGGGCCACCTTCTAATAATTTCCATTA
CTGATAGACCTCGACGATCGCTCGAATTTTGGAAGCACATTCTTCTCAAC
AACGTTATCTTAGGACAACGCATGATATAGTGATCAATGTCATTCTGAAT
GACCACTCCTGGACGACAATCGCATACAATCTTCGTATCTGAAAGGTGAG
CACACGTAAGCACCAAGAGGATGTAAGTTTGGCGTATGCCCAACCTTACG
CTTGACATAAGGTTATACGTTTTTTGTCTTCAACCAAGAAGATTTAAGGT
CCAGGCTCTGACTCGAGTGGTCAGTTTTAAAAGGCCAGCTCTCTTTTTCA
GTCACAGGAGGTAACGCTATCCCTCCTACACCAGGCTGGTGTGGAAAGAG
ACGTTCCCAGAAGTAGCGTCTTATCCCTTTGACTTCGAATTCCCAAGAAG
TTATTTTACCAGCTGCGGCACTGTGAATGAAATCTTAGGGCTGAGCTGAG
ATATATATCTCCCCAACACCTGAAGCTGGTTTTGTTCGGTTCAAATACGA
GACGTAAGTACATGCTGAGGAAGAAGTCGACCCTCGTAGTCTTCCCCGTT
GTGCTGACAACACTGTCAAACCTCTTCAGGCTCTCCACCCGAGTCTACGT
ACTCCTTGCCGTAGCATTGAAATTCACAACCTCTTCAGCTTATCCGCGAC
CATGACGATTTTCTCACTGACAAAGTTAACGGCGTTTGCAACTCTCTTTG
CATCTGTTTCTCTTCTCGCCCAAGCCTCGTTCTTTTCGATAGACGGTCAT
GTTACACATGGTGTCAACAGCTTCAATAACAAACTAGTCGTGAACTTTTC
TTCATCCTCGTTGATATTTTCATCATTTCCACCTCTTGCCGAGATCGGAG
TCAGAAACCCATCCGGGGCAAATGCCTCGCTTATCACGGATTCCACGCCG
CTCTTTTCCCAAATGGCCACCATAGATGCGTTTGACTTTCAAACGTTTTT
GATGCTTCCCCCCGGTGTGGGACCTTTCAACGTTCCTATCGCAGAAACGC
CGACCTTCAATCTCGTTTCCGCCAACATAACTGATCGCTCTACTCCATTC
TTCTTCGAAGATTCCATTGATCCAGCCATCTTAGGACAATCTTACCTTTC
GAGCATGGCAGATGCAAACATCACTTTAAGAGAGTGGAACAAAGCAGCTT
CACGTCTTTCGGGAGTGTGTCGCGAAGGCAAAGCAAGGGTAAGAGTGCAG
CTGCAAAATGCACTTCCAAATGGGCTGTACACTTTGTGGGACGTAGGAGT
GGTGTCGCCTTTGACTACTAATGAAACAGTCACGGTTGGTCCGTTTGGGG
GGATACCAAACGTGCTAGCCACCGATGAATGGGGCCGTGCTTCTATAGTT
CGAGATTTGAATTACTGCCCATTTGACAAATGTATTGGCGCTGTGCGATG
TACGCTATCAGTTTCGTTGAATTATCACTTTGATCACGTAATCTTTGGCG
GAGCACCGACTCTTGACTTTGCTGGATTGGCGGCTGGACATGTTGCAGCG
AATCAGATGGCAATATATCCAAACGGTGACTTCATAATCACGCCTCAAAA
CAAATTCCGCTCCTTCCGTTGGTAG
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Coding sequence (CDS) from alignment at tig00000192_pilon:15280..17404-

>Ggra10809.t1 ID=Ggra10809.t1|Name=Ggra10809.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00000192_pilon:15280..17404- (Gracilaria gracilis GNS1m male)
ATGTCATCGGGAGCAGAATTGCTTATGGCTTGGGAGGTCGATGCGGAAGA
TGCAAAGTACATCATGCGGGCTGAGCTGAGATATATATCTCCCCAACACC
TGAAGCTGGTTTTGTTCGGTTCAAATACGAGACCCTCGTTCTTTTCGATA
GACGGTCATGTTACACATGGTGTCAACAGCTTCAATAACAAACTAGTCGT
GAACTTTTCTTCATCCTCGTTGATATTTTCATCATTTCCACCTCTTGCCG
AGATCGGAGTCAGAAACCCATCCGGGGCAAATGCCTCGCTTATCACGGAT
TCCACGCCGCTCTTTTCCCAAATGGCCACCATAGATGCGTTTGACTTTCA
AACGTTTTTGATGCTTCCCCCCGGTGTGGGACCTTTCAACGTTCCTATCG
CAGAAACGCCGACCTTCAATCTCGTTTCCGCCAACATAACTGATCGCTCT
ACTCCATTCTTCTTCGAAGATTCCATTGATCCAGCCATCTTAGGACAATC
TTACCTTTCGAGCATGGCAGATGCAAACATCACTTTAAGAGAGTGGAACA
AAGCAGCTTCACGTCTTTCGGGAGTGTGTCGCGAAGGCAAAGCAAGGGTA
AGAGTGCAGCTGCAAAATGCACTTCCAAATGGGCTGTACACTTTGTGGGA
CGTAGGAGTGGTGTCGCCTTTGACTACTAATGAAACAGTCACGGTTGGTC
CGTTTGGGGGGATACCAAACGTGCTAGCCACCGATGAATGGGGCCGTGCT
TCTATAGTTCGAGATTTGAATTACTGCCCATTTGACAAATGTATTGGCGC
TGTGCGATGTACGCTATCAGTTTCGTTGAATTATCACTTTGATCACGTAA
TCTTTGGCGGAGCACCGACTCTTGACTTTGCTGGATTGGCGGCTGGACAT
GTTGCAGCGAATCAGATGGCAATATATCCAAACGGTGACTTCATAATCAC
GCCTCAAAACAAATTCCGCTCCTTCCGTTGGTAG
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