Ggra10821.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10821.t1
Unique Name	Ggra10821.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	540

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000192_pilon	contig	tig00000192_pilon:102998..104696 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10821	Ggra10821	Gracilaria gracilis GNS1m male	gene	tig00000192_pilon 102998..104696 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10821.t1	Ggra10821.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000192_pilon 102998..104696 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10821.t1.start1	Ggra10821.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000192_pilon 102998..103000 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10821.t1.CDS1	Ggra10821.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000192_pilon 102998..103907 +
Ggra10821.t1.CDS2	Ggra10821.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000192_pilon 103987..104696 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10821.t1.exon1	Ggra10821.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000192_pilon 102998..103907 +
Ggra10821.t1.exon2	Ggra10821.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000192_pilon 103987..104696 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10821.t1.intron1	Ggra10821.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000192_pilon 103908..103986 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10821.t1.stop1	Ggra10821.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000192_pilon 104694..104696 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000192_pilon:102998..104696+
coding sequence from alignment at tig00000192_pilon:102998..104696+

mRNA sequence

>Ggra10821.t1 ID=Ggra10821.t1|Name=Ggra10821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp
MDSPHESYVSGTPPEPMLPLDLSSSWPSRTLEEDFLLPSLPQPAEDTTSL
DRDGVDDIDYDAPAVLTQIDCTLPPALTAIGDVSSSFLDSSSIQRNDSKQ
HSLAAKACLGLQVPSNTTKSNRTALKALCVYVLSTDLKENANISLSDEQL
FSAGRCIIFNDGLDNCLLYGHSDWSQEQLKKVRFYLIEFSVNYRKSDGNE
LAPTTMKTYMMSIQRGFKMQWGYDLNPFQGFVLSCPLDGLVGVLDNRPRQ
LQRKKLHVTHHNVLSKADLIKLYMSSSLPKNYPEGFHARMVVQYWITNGN
APYIGGNNGSYKTVKGGWKSIGQDPPQIVVWNENYGNFLNFFKDLDQYLQ
LPDDLSPGTYRFLGINKKAESSHECFKRVHVGMNTFSTIVRRVCLKQGIS
GSGVKWLPSTNLLRGTLASILIELGHSDSAVAMRTGHWGLRSLKSYQNLN
GRERFLQQRDVLGVEAQPPCKKMRSGETSKLGSTEHCEESGQGASEASEA
PSHRSAANVKEIQRVVSSTIGAVSGGVVNFTVNYFGLKE*

spliced messenger RNA

>Ggra10821.t1 ID=Ggra10821.t1|Name=Ggra10821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00000192_pilon:102998..104696+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGTCCACACGAATCTTACGTCAGCGGCACACCGCCGGAACCGAT
GTTACCTCTTGATTTATCATCCTCCTGGCCGTCAAGAACCCTCGAAGAGG
ACTTTCTTCTCCCCTCGCTACCTCAACCTGCCGAAGACACCACTTCGCTT
GATCGCGACGGTGTAGATGATATCGACTATGACGCACCAGCCGTCTTAAC
ACAAATTGACTGCACTTTACCCCCTGCCCTTACCGCAATCGGAGACGTTT
CTAGCAGCTTTCTGGACAGCAGCTCAATACAGCGCAACGACTCCAAGCAA
CACAGTCTTGCCGCAAAGGCATGTTTGGGACTGCAGGTTCCCTCCAACAC
TACTAAGTCAAACCGCACTGCCCTAAAAGCACTGTGTGTTTATGTACTTA
GCACGGACTTGAAGGAAAACGCCAACATATCTTTGTCCGACGAACAACTA
TTTTCTGCCGGAAGGTGCATTATTTTCAACGATGGTTTGGACAATTGCCT
TCTATATGGACACTCTGACTGGTCCCAAGAGCAGCTTAAGAAAGTGCGCT
TCTACCTAATTGAATTTTCCGTCAACTACAGAAAATCAGACGGGAATGAA
CTGGCTCCGACGACAATGAAGACATACATGATGTCAATCCAGCGAGGTTT
CAAGATGCAGTGGGGCTACGATCTCAACCCTTTTCAAGGTTTCGTATTGA
GCTGTCCACTAGATGGCCTCGTTGGAGTTCTGGACAACCGCCCACGCCAG
TTGCAAAGAAAAAAATTGCATGTAACGCATCATAATGTCCTGTCAAAAGC
CGACTTGATCAAGCTTTACATGTCAAGTTCTCTACCGAAGAACTATCCGG
AAGGATTTCACGCACGTATGGTTGTTCAATATTGGATTACTAACGGCAAT
GCACCTTACATTGGTGGAAATAATGGATCATATAAGACAGTTAAGGGAGG
TTGGAAGTCGATTGGGCAGGACCCGCCGCAAATTGTAGTATGGAATGAGA
ACTATGGTAACTTTTTGAATTTCTTCAAGGACTTGGATCAGTACCTTCAA
CTTCCGGACGATTTGAGCCCCGGTACATACCGTTTTTTGGGTATTAACAA
GAAGGCAGAGTCTTCGCATGAGTGTTTTAAGAGAGTTCACGTCGGTATGA
ATACGTTTTCTACAATTGTTAGACGTGTTTGTTTAAAGCAAGGCATTTCT
GGGAGTGGGGTAAAGTGGTTGCCATCTACAAATTTACTTCGTGGTACCCT
TGCAAGCATATTAATTGAATTGGGGCATTCCGATTCGGCAGTTGCTATGA
GAACTGGACATTGGGGTCTACGATCTCTGAAAAGCTACCAGAACCTGAAT
GGTCGTGAGCGATTTCTACAGCAACGGGACGTTCTTGGTGTAGAAGCACA
ACCCCCGTGCAAGAAGATGCGGTCAGGTGAGACATCGAAGTTGGGGTCGA
CGGAGCACTGTGAGGAATCTGGACAAGGCGCGAGCGAAGCGAGCGAAGCC
CCGTCCCACCGCAGTGCTGCAAATGTGAAAGAAATTCAGCGTGTAGTGTC
TTCCACTATCGGCGCAGTGAGCGGTGGGGTGGTGAATTTCACTGTGAACT
ACTTTGGCCTGAAGGAGTGA

protein sequence of Ggra10821.t1

>Ggra10821.t1 ID=Ggra10821.t1|Name=Ggra10821.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=540bp
MDSPHESYVSGTPPEPMLPLDLSSSWPSRTLEEDFLLPSLPQPAEDTTSL
DRDGVDDIDYDAPAVLTQIDCTLPPALTAIGDVSSSFLDSSSIQRNDSKQ
HSLAAKACLGLQVPSNTTKSNRTALKALCVYVLSTDLKENANISLSDEQL
FSAGRCIIFNDGLDNCLLYGHSDWSQEQLKKVRFYLIEFSVNYRKSDGNE
LAPTTMKTYMMSIQRGFKMQWGYDLNPFQGFVLSCPLDGLVGVLDNRPRQ
LQRKKLHVTHHNVLSKADLIKLYMSSSLPKNYPEGFHARMVVQYWITNGN
APYIGGNNGSYKTVKGGWKSIGQDPPQIVVWNENYGNFLNFFKDLDQYLQ
LPDDLSPGTYRFLGINKKAESSHECFKRVHVGMNTFSTIVRRVCLKQGIS
GSGVKWLPSTNLLRGTLASILIELGHSDSAVAMRTGHWGLRSLKSYQNLN
GRERFLQQRDVLGVEAQPPCKKMRSGETSKLGSTEHCEESGQGASEASEA
PSHRSAANVKEIQRVVSSTIGAVSGGVVNFTVNYFGLKE*

mRNA from alignment at tig00000192_pilon:102998..104696+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10821.t1 ID=Ggra10821.t1|Name=Ggra10821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1699bp|location=Sequence derived from alignment at tig00000192_pilon:102998..104696+ (Gracilaria gracilis GNS1m male)
ATGGACAGTCCACACGAATCTTACGTCAGCGGCACACCGCCGGAACCGAT
GTTACCTCTTGATTTATCATCCTCCTGGCCGTCAAGAACCCTCGAAGAGG
ACTTTCTTCTCCCCTCGCTACCTCAACCTGCCGAAGACACCACTTCGCTT
GATCGCGACGGTGTAGATGATATCGACTATGACGCACCAGCCGTCTTAAC
ACAAATTGACTGCACTTTACCCCCTGCCCTTACCGCAATCGGAGACGTTT
CTAGCAGCTTTCTGGACAGCAGCTCAATACAGCGCAACGACTCCAAGCAA
CACAGTCTTGCCGCAAAGGCATGTTTGGGACTGCAGGTTCCCTCCAACAC
TACTAAGTCAAACCGCACTGCCCTAAAAGCACTGTGTGTTTATGTACTTA
GCACGGACTTGAAGGAAAACGCCAACATATCTTTGTCCGACGAACAACTA
TTTTCTGCCGGAAGGTGCATTATTTTCAACGATGGTTTGGACAATTGCCT
TCTATATGGACACTCTGACTGGTCCCAAGAGCAGCTTAAGAAAGTGCGCT
TCTACCTAATTGAATTTTCCGTCAACTACAGAAAATCAGACGGGAATGAA
CTGGCTCCGACGACAATGAAGACATACATGATGTCAATCCAGCGAGGTTT
CAAGATGCAGTGGGGCTACGATCTCAACCCTTTTCAAGGTTTCGTATTGA
GCTGTCCACTAGATGGCCTCGTTGGAGTTCTGGACAACCGCCCACGCCAG
TTGCAAAGAAAAAAATTGCATGTAACGCATCATAATGTCCTGTCAAAAGC
CGACTTGATCAAGCTTTACATGTCAAGTTCTCTACCGAAGAACTATCCGG
AAGGATTTCACGCACGTATGGTTGTTCAATATTGGATTACTAACGGCAAT
GCACCTTACAGTACTTCACTCCCTTACGGGTTCTCAGTTTTCACCGAGTA
TCATGAACAACGAACGTGTGTGGATTGTCACGGGAGCAGTTGGTGGAAAT
AATGGATCATATAAGACAGTTAAGGGAGGTTGGAAGTCGATTGGGCAGGA
CCCGCCGCAAATTGTAGTATGGAATGAGAACTATGGTAACTTTTTGAATT
TCTTCAAGGACTTGGATCAGTACCTTCAACTTCCGGACGATTTGAGCCCC
GGTACATACCGTTTTTTGGGTATTAACAAGAAGGCAGAGTCTTCGCATGA
GTGTTTTAAGAGAGTTCACGTCGGTATGAATACGTTTTCTACAATTGTTA
GACGTGTTTGTTTAAAGCAAGGCATTTCTGGGAGTGGGGTAAAGTGGTTG
CCATCTACAAATTTACTTCGTGGTACCCTTGCAAGCATATTAATTGAATT
GGGGCATTCCGATTCGGCAGTTGCTATGAGAACTGGACATTGGGGTCTAC
GATCTCTGAAAAGCTACCAGAACCTGAATGGTCGTGAGCGATTTCTACAG
CAACGGGACGTTCTTGGTGTAGAAGCACAACCCCCGTGCAAGAAGATGCG
GTCAGGTGAGACATCGAAGTTGGGGTCGACGGAGCACTGTGAGGAATCTG
GACAAGGCGCGAGCGAAGCGAGCGAAGCCCCGTCCCACCGCAGTGCTGCA
AATGTGAAAGAAATTCAGCGTGTAGTGTCTTCCACTATCGGCGCAGTGAG
CGGTGGGGTGGTGAATTTCACTGTGAACTACTTTGGCCTGAAGGAGTGA

Coding sequence (CDS) from alignment at tig00000192_pilon:102998..104696+

>Ggra10821.t1 ID=Ggra10821.t1|Name=Ggra10821.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1620bp|location=Sequence derived from alignment at tig00000192_pilon:102998..104696+ (Gracilaria gracilis GNS1m male)
ATGGACAGTCCACACGAATCTTACGTCAGCGGCACACCGCCGGAACCGAT
GTTACCTCTTGATTTATCATCCTCCTGGCCGTCAAGAACCCTCGAAGAGG
ACTTTCTTCTCCCCTCGCTACCTCAACCTGCCGAAGACACCACTTCGCTT
GATCGCGACGGTGTAGATGATATCGACTATGACGCACCAGCCGTCTTAAC
ACAAATTGACTGCACTTTACCCCCTGCCCTTACCGCAATCGGAGACGTTT
CTAGCAGCTTTCTGGACAGCAGCTCAATACAGCGCAACGACTCCAAGCAA
CACAGTCTTGCCGCAAAGGCATGTTTGGGACTGCAGGTTCCCTCCAACAC
TACTAAGTCAAACCGCACTGCCCTAAAAGCACTGTGTGTTTATGTACTTA
GCACGGACTTGAAGGAAAACGCCAACATATCTTTGTCCGACGAACAACTA
TTTTCTGCCGGAAGGTGCATTATTTTCAACGATGGTTTGGACAATTGCCT
TCTATATGGACACTCTGACTGGTCCCAAGAGCAGCTTAAGAAAGTGCGCT
TCTACCTAATTGAATTTTCCGTCAACTACAGAAAATCAGACGGGAATGAA
CTGGCTCCGACGACAATGAAGACATACATGATGTCAATCCAGCGAGGTTT
CAAGATGCAGTGGGGCTACGATCTCAACCCTTTTCAAGGTTTCGTATTGA
GCTGTCCACTAGATGGCCTCGTTGGAGTTCTGGACAACCGCCCACGCCAG
TTGCAAAGAAAAAAATTGCATGTAACGCATCATAATGTCCTGTCAAAAGC
CGACTTGATCAAGCTTTACATGTCAAGTTCTCTACCGAAGAACTATCCGG
AAGGATTTCACGCACGTATGGTTGTTCAATATTGGATTACTAACGGCAAT
GCACCTTACATTGGTGGAAATAATGGATCATATAAGACAGTTAAGGGAGG
TTGGAAGTCGATTGGGCAGGACCCGCCGCAAATTGTAGTATGGAATGAGA
ACTATGGTAACTTTTTGAATTTCTTCAAGGACTTGGATCAGTACCTTCAA
CTTCCGGACGATTTGAGCCCCGGTACATACCGTTTTTTGGGTATTAACAA
GAAGGCAGAGTCTTCGCATGAGTGTTTTAAGAGAGTTCACGTCGGTATGA
ATACGTTTTCTACAATTGTTAGACGTGTTTGTTTAAAGCAAGGCATTTCT
GGGAGTGGGGTAAAGTGGTTGCCATCTACAAATTTACTTCGTGGTACCCT
TGCAAGCATATTAATTGAATTGGGGCATTCCGATTCGGCAGTTGCTATGA
GAACTGGACATTGGGGTCTACGATCTCTGAAAAGCTACCAGAACCTGAAT
GGTCGTGAGCGATTTCTACAGCAACGGGACGTTCTTGGTGTAGAAGCACA
ACCCCCGTGCAAGAAGATGCGGTCAGGTGAGACATCGAAGTTGGGGTCGA
CGGAGCACTGTGAGGAATCTGGACAAGGCGCGAGCGAAGCGAGCGAAGCC
CCGTCCCACCGCAGTGCTGCAAATGTGAAAGAAATTCAGCGTGTAGTGTC
TTCCACTATCGGCGCAGTGAGCGGTGGGGTGGTGAATTTCACTGTGAACT
ACTTTGGCCTGAAGGAGTGA