Ggra9952.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9952.t1
Unique NameGgra9952.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length97
Homology
BLAST of Ggra9952.t1 vs. uniprot
Match: A0A2V3IVG4 (60S ribosomal protein L10 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVG4_9FLOR)

HSP 1 Score: 179 bits (454), Expect = 2.130e-55
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDGSYC 96
            MLSCA ADRLQTGMRGAFGKPLGTVAR++IGQTLLSLRTKESN+  ALEALRRAKYK PGRQK+FISSKWGFTKFSKE+YLELKEQGRIIPDGSYC
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPLGTVARIRIGQTLLSLRTKESNQNQALEALRRAKYKFPGRQKLFISSKWGFTKFSKEEYLELKEQGRIIPDGSYC 197          
BLAST of Ggra9952.t1 vs. uniprot
Match: R7QIG4 (Ribosomal protein L10, partial (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIG4_CHOCR)

HSP 1 Score: 176 bits (446), Expect = 2.650e-55
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDGSYC 96
            MLSCA ADRLQTGMRGAFGKPLGTVARVKIGQTLLS+RTKE NK HALEALRRAKYK PGRQK+F SSKWGFT+FSK++YLELKE GRIIPDGSYC
Sbjct:   20 MLSCAGADRLQTGMRGAFGKPLGTVARVKIGQTLLSVRTKEQNKPHALEALRRAKYKFPGRQKLFTSSKWGFTQFSKDEYLELKEAGRIIPDGSYC 115          
BLAST of Ggra9952.t1 vs. uniprot
Match: A0A7S2ZWG5 (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZWG5_9RHOD)

HSP 1 Score: 164 bits (414), Expect = 2.450e-49
Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDGSYC 96
            MLSCA ADRLQTGMRGAFGKP GTVARVKIGQTLLS+R++++NK H LEALRRAKYK PGRQK+FIS +WGFT+F +E Y++LKEQGRIIPDGS+C
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVKIGQTLLSVRSRDANKGHVLEALRRAKYKFPGRQKLFISRRWGFTQFDREDYIKLKEQGRIIPDGSHC 197          
BLAST of Ggra9952.t1 vs. uniprot
Match: A0A1X6PKW8 (Ribosomal_L16 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKW8_PORUM)

HSP 1 Score: 159 bits (402), Expect = 1.620e-47
Identity = 74/96 (77.08%), Postives = 87/96 (90.62%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDGSYC 96
            MLSCA ADRLQTGMRGAFGKP GTVARV IGQTLLS+R+K+SNKA  LEALRRAKYK PGRQK+++SS WGFT+F++E+Y+ELK  G+IIPDG+YC
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVNIGQTLLSVRSKDSNKAIVLEALRRAKYKFPGRQKVYVSSNWGFTRFTREEYVELKAAGKIIPDGAYC 197          
BLAST of Ggra9952.t1 vs. uniprot
Match: A0A5J4YTG8 (60S ribosomal protein L10 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTG8_PORPP)

HSP 1 Score: 152 bits (383), Expect = 1.380e-44
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDGSY 95
            MLSCA ADRLQTGMRGAFGKP G VARV IGQ LLSLRT+ESN  HA+EALRRAKYK PGRQK+ +S+KWGFT+F+ E+Y ELK+ G++IPDG Y
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGLVARVSIGQVLLSLRTRESNTVHAMEALRRAKYKFPGRQKVIVSNKWGFTRFTHEEYKELKDAGKLIPDGCY 196          
BLAST of Ggra9952.t1 vs. uniprot
Match: A0A8B7YJ68 (60S ribosomal protein L10-like n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7YJ68_ACAPL)

HSP 1 Score: 150 bits (378), Expect = 8.380e-44
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDG 93
            MLSCA ADRLQTGMRGAFGKP GTVARV IGQT++S+RTK+SNKA A+EA RRAK+K PGRQKIF S  WGFTKF++E+Y EL+ +GR+IPDG
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQTIMSIRTKDSNKAFAIEAFRRAKFKFPGRQKIFTSENWGFTKFTRERYEELRSEGRLIPDG 194          
BLAST of Ggra9952.t1 vs. uniprot
Match: A0A1R1YE63 (60S ribosomal protein L10 n=3 Tax=Smittium TaxID=4888 RepID=A0A1R1YE63_9FUNG)

HSP 1 Score: 149 bits (375), Expect = 2.450e-43
Identity = 71/95 (74.74%), Postives = 80/95 (84.21%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDGSY 95
            MLSCA ADRLQTGMRGAFGKP GT ARVKIGQ LLS+RTK+SNKA  +EALRRAKYK PGRQKI IS KWGFTK S+E+Y   + +G++IPDG Y
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPYGTAARVKIGQILLSVRTKDSNKATVMEALRRAKYKFPGRQKIIISKKWGFTKLSREEYANARVEGKVIPDGCY 196          
BLAST of Ggra9952.t1 vs. uniprot
Match: L8GXX4 (Ribosomal protein L10, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GXX4_ACACA)

HSP 1 Score: 147 bits (370), Expect = 1.150e-42
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDG 93
            MLSCA ADRLQTGMRGAFGKP G VARVKIGQ L S+R+K+++KAH +EALRRAKYK PGRQKI +S+KWGFT   +E+YL+LK +GRIIPDG
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPAGCVARVKIGQILFSVRSKDNSKAHVIEALRRAKYKFPGRQKIVLSNKWGFTPLQREEYLQLKSEGRIIPDG 194          
BLAST of Ggra9952.t1 vs. uniprot
Match: A0A3M6TAU9 (Ribosomal_L16 domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TAU9_POCDA)

HSP 1 Score: 144 bits (364), Expect = 2.410e-42
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDG 93
            MLSCA ADRLQTGMRGAFGKP GTVARV IGQ ++SLRTK+ NKA A+EALRRAK+K PGRQKI++S KWGFTKF +E Y E +  G++IPDG
Sbjct:   49 MLSCAGADRLQTGMRGAFGKPQGTVARVNIGQVIMSLRTKDGNKAAAIEALRRAKFKFPGRQKIYVSKKWGFTKFDREVYEEWRASGKLIPDG 141          
BLAST of Ggra9952.t1 vs. uniprot
Match: A0A7M7TGV8 (Ribosomal_L16 domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7TGV8_STRPU)

HSP 1 Score: 145 bits (367), Expect = 4.100e-42
Identity = 68/93 (73.12%), Postives = 84/93 (90.32%), Query Frame = 0
Query:    1 MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEALRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDG 93
            MLSCA ADRLQTGMRGAFGKP GTVARVKIGQT++S+RTKE NKA A EALRRAK+K PGRQKIF S+KWGFTK+++E+Y +++ +G+++PDG
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVKIGQTIMSVRTKEGNKAAAHEALRRAKFKFPGRQKIFDSNKWGFTKWTREEYEKMRAEGKLVPDG 194          
The following BLAST results are available for this feature:
BLAST of Ggra9952.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IVG42.130e-5590.6360S ribosomal protein L10 n=1 Tax=Gracilariopsis c... [more]
R7QIG42.650e-5588.54Ribosomal protein L10, partial (Fragment) n=1 Tax=... [more]
A0A7S2ZWG52.450e-4979.17Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PKW81.620e-4777.08Ribosomal_L16 domain-containing protein n=1 Tax=Po... [more]
A0A5J4YTG81.380e-4474.7460S ribosomal protein L10 n=1 Tax=Porphyridium pur... [more]
A0A8B7YJ688.380e-4475.2760S ribosomal protein L10-like n=2 Tax=Valvatida T... [more]
A0A1R1YE632.450e-4374.7460S ribosomal protein L10 n=3 Tax=Smittium TaxID=4... [more]
L8GXX41.150e-4274.19Ribosomal protein L10, putative n=1 Tax=Acanthamoe... [more]
A0A3M6TAU92.410e-4273.12Ribosomal_L16 domain-containing protein n=1 Tax=Po... [more]
A0A7M7TGV84.100e-4273.12Ribosomal_L16 domain-containing protein n=2 Tax=Ec... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.60.300coord: 78..96
e-value: 2.4E-5
score: 25.9
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 1..77
e-value: 1.9E-39
score: 136.9
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 1..72
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 5..64
e-value: 9.2E-14
score: 51.6
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 10..64
e-value: 1.16301E-18
score: 72.1391
IPR001197Ribosomal protein L10ePANTHERPTHR1172660S RIBOSOMAL PROTEIN L10coord: 1..94
IPR018255Ribosomal protein L10e, conserved sitePROSITEPS01257RIBOSOMAL_L10Ecoord: 7..28

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:277621..277911 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9952.t1Ggra9952.t1Gracilaria gracilis GNS1m malemRNAtig00000887_pilon 277621..277911 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9952.t1 ID=Ggra9952.t1|Name=Ggra9952.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=97bp
MLSCASADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKESNKAHALEA
LRRAKYKIPGRQKIFISSKWGFTKFSKEKYLELKEQGRIIPDGSYC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036920Ribosomal_L10e/L16_sf
IPR016180Ribosomal_L10e/L16
IPR001197Ribosomal_L10e
IPR018255Ribosomal_L10e_CS