Ggra9936.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9936.t1
Unique NameGgra9936.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length808
Homology
BLAST of Ggra9936.t1 vs. uniprot
Match: A0A2V3J1W1 (NYN domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1W1_9FLOR)

HSP 1 Score: 214 bits (545), Expect = 9.540e-57
Identity = 104/191 (54.45%), Postives = 132/191 (69.11%), Query Frame = 0
Query:  114 AAAYSRPFAWTVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGRKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLASVPNAVLTFDQILAHIPPRVVPQPHQNPKVKPAAVQQRAD 304
            + A +R F W VFWDLEN  +PSS  PA F+ AL  ALR+  P   ++   P+LR +AV N+H T L+ R +LQSNG+S+LH ++  RKDACDKALITELCLL REH+PPMGVALLS DVDFAY L+RL ALGY+T VV P +  +SR LA+VP  VLTFD IL H+P  + P        +P + +  +D
Sbjct:  127 STACTRQFPWVVFWDLENVKIPSSLQPATFIHALRNALRTTAPTQSLNQTPPILRFIAVTNVHATPLKVRTALQSNGISLLHVDSQTRKDACDKALITELCLLPREHSPPMGVALLSNDVDFAYPLARLAALGYHTVVVTPRIEMISRTLATVPRTVLTFDNILTHVPSSISPHSALQSSNQPMSTRSTSD 317          
BLAST of Ggra9936.t1 vs. uniprot
Match: A0A7S1TFS0 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFS0_9RHOD)

HSP 1 Score: 99.8 bits (247), Expect = 8.200e-19
Identity = 56/156 (35.90%), Postives = 81/156 (51.92%), Query Frame = 0
Query:  110 FIRPAAAYSRPFAWTVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGRKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLAS 265
            F R AA       W VFWD++N      +P A  V  +   L+S           PV+       +    L  R +LQ  G +I H +TDGRKD+ DK +I E+C+ A    PP G+AL+S D DF +ALSRL  LG+  A+++  M + + +LA+
Sbjct:  144 FDREAAVARAVEGWMVFWDIQNVTPAQGSPGAEMVIQIKALLQSFAVG-------PVVGFHVFGPVAEIPLSIRNALQVTGCNIHHVDTDGRKDSVDKVMIAEMCISASSRKPPFGIALISGDKDFVFALSRLRNLGFTIAIISNGMASHALRLAA 292          
BLAST of Ggra9936.t1 vs. uniprot
Match: A0A6N2KVZ2 (NYN domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KVZ2_SALVM)

HSP 1 Score: 68.2 bits (165), Expect = 3.430e-8
Identity = 48/159 (30.19%), Postives = 76/159 (47.80%), Query Frame = 0
Query:  124 TVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGRKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLASVPNAVLTFDQILAHIPP 282
            +V+WD+EN HVP    P A  Q + +AL  +     VS       I A  + H  +   +++L S G+++ H    G KDA DK ++ ++   A ++A P    L+S D DF+ AL +L    Y   +  P     S  L +   +V  +  +LA  PP
Sbjct:   22 SVWWDIENCHVPRDCDPHAIAQNISSALVKMNYCGPVS-------ISAYGDTHRINSAVQQALSSTGIALNHVPA-GVKDASDKKILVDMLFWAVDNAAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQRA--SAPLLAAAKSVWLWTSLLAGGPP 170          
BLAST of Ggra9936.t1 vs. uniprot
Match: A0A8J5X0Q5 (Uncharacterized protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5X0Q5_ZIZPA)

HSP 1 Score: 68.6 bits (166), Expect = 3.450e-8
Identity = 48/162 (29.63%), Postives = 78/162 (48.15%), Query Frame = 0
Query:  124 TVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGRKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLASVPNAVLTFDQILAHIPPRVV 285
            +V+WD+EN HVP    P    Q + +AL +      V        I A  + ++ +     +L S GVS+ H  + G KDA DK ++ ++   A ++ PP    L+S D DF+ AL +L    Y   +  P  P +S+ L +   +V  +  ++A  PP  V
Sbjct:   10 SVWWDIENCHVPRDCDPHLIAQNMSSALAAAGYTGSVY-------IYAYGDTNSIAKPVIHALSSTGVSLNHVPS-GIKDASDKKILVDMLFWAIDNPPPANYLLISGDRDFSNALHKLKMRRYSILLAQP--PNVSQALTAAAKSVWLWKSLVAGEPPLAV 161          
BLAST of Ggra9936.t1 vs. uniprot
Match: A0A2K2A9R3 (Uncharacterized protein n=2 Tax=Populus TaxID=3689 RepID=A0A2K2A9R3_POPTR)

HSP 1 Score: 68.2 bits (165), Expect = 4.440e-8
Identity = 48/159 (30.19%), Postives = 76/159 (47.80%), Query Frame = 0
Query:  124 TVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGRKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLASVPNAVLTFDQILAHIPP 282
            +V+WD+EN HVP    P A  Q + +AL  +     VS       I A  + H  +   +++L S G+++ H    G KDA DK ++ ++   A ++A P    L+S D DF+ AL +L    Y   +  P     S  L +   +V  +  +LA  PP
Sbjct:   22 SVWWDIENCHVPRDCDPHAIAQNISSALVKMNYCGPVS-------ISAYGDTHRINSAVQQALSSTGIALNHVPA-GVKDASDKKILVDMLFWAVDNAAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKA--SAPLLAAAKSVWLWTSLLAGGPP 170          
BLAST of Ggra9936.t1 vs. uniprot
Match: A0A835MYA4 (Uncharacterized protein n=6 Tax=Salix TaxID=40685 RepID=A0A835MYA4_9ROSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.450e-8
Identity = 48/159 (30.19%), Postives = 76/159 (47.80%), Query Frame = 0
Query:  124 TVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGRKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLASVPNAVLTFDQILAHIPP 282
            +V+WD+EN HVP    P A  Q + +AL  +     VS       I A  + H  +   +++L S G+++ H    G KDA DK ++ ++   A ++A P    L+S D DF+ AL +L    Y   +  P     S  L +   +V  +  +LA  PP
Sbjct:   22 SVWWDIENCHVPRDCDPHAIAQNISSALVKMNYCGPVS-------ISAYGDTHRINSAVQQALSSTGIALNHVPA-GVKDASDKKILVDMLFWAVDNAAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKA--SAPLLAAAKSVWLWTSLLAGGPP 170          
BLAST of Ggra9936.t1 vs. uniprot
Match: A0A444E4G7 (NYN domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444E4G7_ENSVE)

HSP 1 Score: 64.7 bits (156), Expect = 4.650e-8
Identity = 51/182 (28.02%), Postives = 86/182 (47.25%), Query Frame = 0
Query:  124 TVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGR-------KDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLASVPNAVLTFDQILAHIPPRVVPQPHQNPKVKPAA 298
            +V+WD+EN HVP +  P    Q + +AL ++     VS    +       NI  T LQ   +L S G+++ H  +  R       +DA DK ++ ++   A ++ PP    L+S D DF+ AL +L    Y   +  P  P +S+ L +   +V  +  ++A   P      H++P V  +A
Sbjct:   12 SVWWDIENCHVPRTCDPHLIAQNISSALAAVGYRGPVS----ISAFGDSNNITPTVLQ---ALSSTGIALNHVPSGKRSDRESRSRDASDKRILVDMLFWAVDNPPPANYLLISGDRDFSNALHQLRLRRYNILLAQP--PNVSQALVAAAKSVWNWKDLVAGGKPM-----HESPYVNKSA 179          
BLAST of Ggra9936.t1 vs. uniprot
Match: A0A835APM4 (NYN domain-containing protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835APM4_9POAL)

HSP 1 Score: 67.8 bits (164), Expect = 6.050e-8
Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 0
Query:  124 TVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGRKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLASVPNAVLTFDQILAHIPP 282
            +V+WD+EN HVP  + P    Q + +AL +        +  P+  I A  + +      + +L S G+++ H    G KDA DK ++ ++ + A ++ PP    L+S D DF+ AL +L    Y   +  P  P +S+ L +    V  +  ++A  PP
Sbjct:   10 SVWWDIENCHVPRCSEPHLIAQNMSSALAA------AGYTGPIT-ISAYGDTNCVPNHVQHALSSTGIALNHVPA-GIKDASDKKILVDMLIWAIDNPPPANYLLISGDRDFSNALHKLVMRRYNILLAQP--PNVSQVLTAAAKHVWLWKSLVAGEPP 158          
BLAST of Ggra9936.t1 vs. uniprot
Match: A0A1D6IKS7 (Putative endonuclease or glycosyl hydrolase n=13 Tax=Andropogoneae TaxID=147429 RepID=A0A1D6IKS7_MAIZE)

HSP 1 Score: 65.9 bits (159), Expect = 2.220e-7
Identity = 45/159 (28.30%), Postives = 77/159 (48.43%), Query Frame = 0
Query:  124 TVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGRKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLASVPNAVLTFDQILAHIPP 282
            +V+WD+EN HVP S       Q + +AL +        +  P+  I A  + +      + +L S G+++ H    G KDA DK ++ ++ + A ++ PP    L+S D DF+ AL +L    Y   +  P  P +S+ L +    V  +  ++A  PP
Sbjct:   10 SVWWDIENCHVPRSCEAHLIAQNMSSALAA------AGYTGPIT-ISAYGDTNCVPNHVQHALSSTGIALNHVPA-GIKDASDKKILVDMLIWAIDNPPPANYLLISGDRDFSNALHKLVMRRYNILLAQP--PNVSQVLTAAAKHVWLWKDLVAGEPP 158          
BLAST of Ggra9936.t1 vs. uniprot
Match: uncharacterized protein LOC7478875 isoform X2 n=2 Tax=Populus TaxID=3689 RepID=UPI000D18A4EE (uncharacterized protein LOC7478875 isoform X2 n=2 Tax=Populus TaxID=3689 RepID=UPI000D18A4EE)

HSP 1 Score: 65.5 bits (158), Expect = 2.860e-7
Identity = 47/159 (29.56%), Postives = 75/159 (47.17%), Query Frame = 0
Query:  124 TVFWDLENTHVPSSTPPAAFVQALCTALRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDGRKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTAVVAPNMPTLSRQLASVPNAVLTFDQILAHIPP 282
            +V+WD+EN HVP    P A  Q + +AL  +     VS       I A  + H      +++L S G+++ H    G KDA DK ++ ++   A ++  P    L+S D DF+ AL +L    Y   +  P   + S  L +   +V  +  +LA  PP
Sbjct:   24 SVWWDIENCHVPMGCDPHAIAQNISSALVKMNYCGPVS-------ISAYGDTHRIDSAVQQALSSTGIALNHVPA-GVKDASDKKILVDMLFWAVDNPAPGNYLLISGDRDFSNALHQLRMRRYNILLAQPQKTSAS--LLAAAKSVWLWTSLLAGGPP 172          
The following BLAST results are available for this feature:
BLAST of Ggra9936.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1W19.540e-5754.45NYN domain-containing protein n=1 Tax=Gracilariops... [more]
A0A7S1TFS08.200e-1935.90Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A6N2KVZ23.430e-830.19NYN domain-containing protein n=1 Tax=Salix vimina... [more]
A0A8J5X0Q53.450e-829.63Uncharacterized protein n=2 Tax=Zizania palustris ... [more]
A0A2K2A9R34.440e-830.19Uncharacterized protein n=2 Tax=Populus TaxID=3689... [more]
A0A835MYA44.450e-830.19Uncharacterized protein n=6 Tax=Salix TaxID=40685 ... [more]
A0A444E4G74.650e-828.02NYN domain-containing protein n=2 Tax=Ensete ventr... [more]
A0A835APM46.050e-828.30NYN domain-containing protein n=2 Tax=Digitaria ex... [more]
A0A1D6IKS72.220e-728.30Putative endonuclease or glycosyl hydrolase n=13 T... [more]
uncharacterized protein LOC7478875 isoform X2 n=2 Tax=Populus TaxID=3689 RepID=UPI000D18A4EE2.860e-729.56uncharacterized protein LOC7478875 isoform X2 n=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.1010coord: 123..277
e-value: 7.6E-6
score: 28.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 653..669
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 345..360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 591..608
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..762
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 547..564
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 679..704
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 724..745
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 635..652
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 565..580
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 459..488
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 609..624
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..400
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 783..806
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..782
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 807..807
NoneNo IPR availableCDDcd10910PIN_limkain_b1_N_likecoord: 125..254
e-value: 2.5644E-18
score: 79.5848
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
NoneNo IPR availableTMHMMTMhelixcoord: 783..805
IPR021139NYN domain, MARF1-typePFAMPF01936NYNcoord: 125..265
e-value: 1.8E-13
score: 51.2
IPR024768Meiosis regulator and mRNA stability factor 1PANTHERPTHR14379LIMKAIN B LKAPcoord: 78..258

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:133585..136008 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9936.t1Ggra9936.t1Gracilaria gracilis GNS1m malemRNAtig00000887_pilon 133585..136008 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9936.t1 ID=Ggra9936.t1|Name=Ggra9936.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=808bp
MSYRSLRAACGRAAPAAALLAAVAATASLSYAISKYLRAAARARSESSTA
GASVDCSSAQRAQPLQAAPQPSVSSDSFDTGTDFEPTRLSSNAWQRTLAV
HCSSCHPSPFIRPAAAYSRPFAWTVFWDLENTHVPSSTPPAAFVQALCTA
LRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDG
RKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTA
VVAPNMPTLSRQLASVPNAVLTFDQILAHIPPRVVPQPHQNPKVKPAAVQ
QRADQKPPAPPNPAKPQKKRKSPKQPPLVSGANNPTRTPKSKPQLPTDQK
PPAPPNPAKPQKKRKSPKQPPLVSGANNPTRTLAPNPQLNTDQKPASVPN
AVLTFDQILAHIPPRVVPQPHQNPKVKPAAVQQRAAQKPPAPPNPAKPQK
KRKSPKQPPLVSGANNPTRTLAPNPQLNTDQKPASVPNAVLTFDQILAHI
PPRVVPQPHQNPKVKPAAVQQRAAQKPPAPPNPAKPQKKRKSPKQPPLVS
GANNPTRTPKSKPQLPTDQKPPAPPNPAKPQKKRKSPKQPPLVSGANNPT
RTPKSKPQLPTDQKPPAPPNPAKPQKKRKSPKQPPLVSGANNPTRTPKSK
PQLPTDQKPPAPPNPAKPQKKRKSPSKQPPVVSGANNPTRTLAPNPQLST
DQKPRAPRNAPKGQQKRKSPPKQPPVVSGTNFSVVNTTTELRHRKVPQPS
GTDDADVTTLMQSHSINSTQSFDPHVPTDSETVFLIVLGYTALFSILFTL
AVLYWAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021139NYN_MARF1
IPR024768Marf1