Ggra9929.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9929.t1
Unique Name	Ggra9929.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	113

Homology

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BLAST of Ggra9929.t1 vs. uniprot
Match: A0A2V3J273 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J273_9FLOR)

HSP 1 Score: 174 bits (442), Expect = 1.140e-54
Identity = 84/112 (75.00%), Postives = 96/112 (85.71%), Query Frame = 0

Query:    1 MRDVILSGTAGFLFACAGGFSVHRSIWKSANGQAKKLDAIVGNVDNSAATSRSRQPTESFESFIARRFCQWWNDGVDNVHRRLLNFPQTLGKIVDDVKGTASKPSKTPDSSQ 112
            MRDVILSGTAGFLFAC GGFSVHRS+WKSA+ QAK+LDAIVGN     +T    + TESFESFIARRFCQWWN+GVDNVHRRLLNFPQT+G+IV DV+  A KP+++PDSSQ
Sbjct:    1 MRDVILSGTAGFLFACVGGFSVHRSVWKSADEQAKRLDAIVGNTQIPIST----RGTESFESFIARRFCQWWNNGVDNVHRRLLNFPQTVGRIVTDVRARAPKPAESPDSSQ 108

[Close]

BLAST of Ggra9929.t1 vs. uniprot
Match: S0F382 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F382_CHOCR)

HSP 1 Score: 115 bits (287), Expect = 4.600e-31
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 0

Query:    1 MRDVILSGTAGFLFACAGGFSVHRSIWKSANGQAKKLDAIVGNVDNSAATSRSRQPTESFESFIARRFCQWWNDGVDNVHRRLLNFPQTLGKIVDDVKGTASKP 104
            MRD++LSGTAGF  +CA  F+VHR++WK+A  Q+++LD + G     +  +  R+  +SFE FI RRF QWWN  VDNVH RLL  P T+  IV D K     P
Sbjct:    1 MRDILLSGTAGFFSSCAAAFAVHRALWKAAEDQSQQLDELAGRSQAHSVIAPKRRLADSFEGFIFRRFSQWWNSSVDNVHGRLLGLPDTVNGIVQDAKSGNESP 104

The following BLAST results are available for this feature:

BLAST of Ggra9929.t1 vs. uniprot

BLAST of Ggra9929.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J273	1.140e-54	75.00	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
S0F382	4.600e-31	49.04	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..112
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..16 score: 5.0
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:119295..119752 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9929.t1	Ggra9929.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000887_pilon 119295..119752 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9929.t1 ID=Ggra9929.t1|Name=Ggra9929.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=113bp
MRDVILSGTAGFLFACAGGFSVHRSIWKSANGQAKKLDAIVGNVDNSAAT
SRSRQPTESFESFIARRFCQWWNDGVDNVHRRLLNFPQTLGKIVDDVKGT
ASKPSKTPDSSQ*