Ggra9924.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9924.t1
Unique NameGgra9924.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length239
Homology
BLAST of Ggra9924.t1 vs. uniprot
Match: A0A2V3J225 (G-patch_2 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J225_9FLOR)

HSP 1 Score: 160 bits (405), Expect = 4.020e-45
Identity = 102/233 (43.78%), Postives = 148/233 (63.52%), Query Frame = 0
Query:    1 MSFKLSLNRAAVRRKRGRLQVSSTAQPRSVAP-AFGQEDDSEDSDESPRAQKVTTISAHVDEKPKAE--ESEQLKEGHVEHQGGNKSDAKISQVATIVERRKEANISSAIPREQKDEALFRYEVANCPDEADVHSYAQRPVDGFGDMMLRSMGWNGKQALEEKYESPVPRPNRLGLGAKPSALKKPTRRKRLRETNSKTDSTPN--VYSEENLQNGTDEGVTVNSKPSRSELN 228
            M+F++++ R A RRK+ R   ++T  P    P AF  E DS+ S ++ R +K+TT+S      PK E  +S  +K         N +  K SQ+A +VERRKEA +SS+  R+Q+D  LF+Y+++ C + AD   Y QRPVDGFG+MML++MGW+GK++ EEK+++PVPRP+RLGLGAK    KKP   KRLR T +      N   +  E+  NG + GVT++S+ +R ELN
Sbjct:    1 MNFQINIKRTAARRKKAR---ANTLPPLKKQPSAFASEHDSDASTDASRPRKITTVSTPA---PKTENNQSTSVKAEQQAEAQENTTRPKTSQIARLVERRKEAQLSSSTNRDQRDNVLFQYDLSKCAEGADGAGYDQRPVDGFGEMMLKAMGWSGKKSAEEKHKAPVPRPSRLGLGAKLDNQKKPPPTKRLRSTANDRVLIANGAQHGAESEDNGGN-GVTIDSRTTRLELN 226          
BLAST of Ggra9924.t1 vs. uniprot
Match: R7QTE2 (G-patch_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTE2_CHOCR)

HSP 1 Score: 100 bits (250), Expect = 5.710e-22
Identity = 85/249 (34.14%), Postives = 120/249 (48.19%), Query Frame = 0
Query:    2 SFKLSLNRAAVRRKRGRLQVSSTAQPRSVAPAFGQEDDSEDSDESPRAQKVTTISAHVDEKPKAEESEQLK----EGHVE--HQGGNKSDAKISQVATIVERRKEAN----ISSAIPREQKDEALFRYEVANCPDEADVHSYAQRPVDGFGDMMLRSMGWNGKQALEEKYES-------PVPRPNRLGLGAKPSALKKPTRRKRLRETNSKTDSTPNV----YSEENLQNGTDEGVTVNSKPSRSELNH 229
            SF + L R   R   G L     AQP++V    G ED     DE PR + V+ +     ++ K   ++ +K    +G ++   +  +    K+SQ+A +VERRK+A     +S ++  E KDEALFRY+V  C  E  + +Y   PVDGFG  MLRSMGW G    + K          P PRP+RLGLGAK    +K  +   +++ N  + S  NV    Y    L  GT      +S P  S   H
Sbjct:    3 SFAIGLKRGRRRPHAGGLGSRCVAQPQAVHGFSGDEDSG---DEKPRGKSVSHVGDSPHDQQKQIPAQGIKTNGEKGRIKVMEEKADSPKVKVSQIARLVERRKDAERELQVSDSV--ETKDEALFRYDVERCSREVSLQTYQGTPVDGFGAAMLRSMGWRGNTEKKGKGSKDLSDSWRPKPRPSRLGLGAK--LHEKEQKSGAIQKKNHVSTSLQNVKSVGYQSLELLKGTQSEEEQSSSPKESSARH 244          
BLAST of Ggra9924.t1 vs. uniprot
Match: A0A1Q3AE98 (Pre-mRNA-splicing factor SPP2 n=1 Tax=Zygosaccharomyces rouxii TaxID=4956 RepID=A0A1Q3AE98_ZYGRO)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-7
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 0
Query:  110 EQKDEALFRYEV--ANCPDE------ADVHSYAQRPVDGFGDMMLRSMGWNGKQALEEKYESPVPRPNRLGLGAKP 177
            +Q+D  L   E    N PDE       +   Y + PV+ FGD +LR MGW+GK+   +  +SPVPRP  +G+GAKP
Sbjct:   90 DQRDGTLNSQEQINVNLPDENLLPEITEKEEYDKVPVEEFGDALLRGMGWDGKEDERDSSDSPVPRPQFMGIGAKP 165          
The following BLAST results are available for this feature:
BLAST of Ggra9924.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J2254.020e-4543.78G-patch_2 domain-containing protein n=1 Tax=Gracil... [more]
R7QTE25.710e-2234.14G-patch_2 domain-containing protein n=1 Tax=Chondr... [more]
A0A1Q3AE981.600e-742.11Pre-mRNA-splicing factor SPP2 n=1 Tax=Zygosaccharo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026822Spp2/MOS2, G-patch domainPFAMPF12656G-patch_2coord: 125..178
e-value: 5.2E-13
score: 48.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..226
NoneNo IPR availablePANTHERPTHR15818:SF2G-PATCH DOMAIN AND KOW MOTIFS-CONTAINING PROTEINcoord: 48..221
IPR045166Pre-mRNA-splicing factor Spp2-likePANTHERPTHR15818G PATCH AND KOW-CONTAININGcoord: 48..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:107440..108156 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9924.t1Ggra9924.t1Gracilaria gracilis GNS1m malemRNAtig00000887_pilon 107440..108156 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9924.t1 ID=Ggra9924.t1|Name=Ggra9924.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=239bp
MSFKLSLNRAAVRRKRGRLQVSSTAQPRSVAPAFGQEDDSEDSDESPRAQ
KVTTISAHVDEKPKAEESEQLKEGHVEHQGGNKSDAKISQVATIVERRKE
ANISSAIPREQKDEALFRYEVANCPDEADVHSYAQRPVDGFGDMMLRSMG
WNGKQALEEKYESPVPRPNRLGLGAKPSALKKPTRRKRLRETNSKTDSTP
NVYSEENLQNGTDEGVTVNSKPSRSELNHRAISKRPRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026822Spp2/MOS2_G-patch
IPR045166Spp2-like