Ggra9911.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9911.t1
Unique NameGgra9911.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length622
Homology
BLAST of Ggra9911.t1 vs. uniprot
Match: A0A2V3J4N2 (Homeobox protein HD-5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4N2_9FLOR)

HSP 1 Score: 445 bits (1145), Expect = 5.200e-145
Identity = 264/516 (51.16%), Postives = 335/516 (64.92%), Query Frame = 0
Query:  114 SLHDMASDLHHDLHAVAQHAVHVKAQPEPAASTAAQQESPPMHAAETQLSEQTAQHAIEFSTATEQAQPAIV-EAEHPPPPTHESQEMMAAQPESQLVQTAVTAAADSEMQHSTAVVHALQKTEAQLDAHNPLAEEHASHLAHSSAFPTAAVPV---SAPAAVAEYVVNKPVEDDQTRVPNEFDPKCHQSP-HEPMSISPRRMAERTKRGSERYHASGDQLKTLIAAFEQNPTPDASTLNYLSEAIGMPMHNLVLWFKNRRARHKRTHISPPSKGGKRSYVKSGIYSRNKRVKQSHHQPAPATVPSGGLTLPLSHGLSSIS-SPIPVSSIALS--GDAKNPGMATASRDIEELIKSGAPHPSRMKRPRFSAIPELVGDDNPCQGWTSEECHRRCVAFFERATSSSFPEQSKIVEHISSEFFLSELQSGLTLVSAMQPLETSVGVLDAIMEKLPAEGPRLSSGSRVIMREFLAQIRMGSAGQFAIIEGSTEAAETVAEAHATVSQTVAPTASSTVEQ 621
            +L D+A  L HDL AVAQ AV VK QP+ +    A+Q S           +Q   +A   +T  +  Q  ++ +A+    P H +Q         Q+V T  T     ++ H T  VH + K E QL+  + LA   ++ +                SA  AV + V+NK  + D  R   E+  K  Q P H    +  RR A+R+KRGSERYHASG+QLKTLIAAFEQ+PTP A TLNYLS +I MPMHNLVLWFKNRRARHKRTH +  S+GGKRSYVKSGIYSRNKR KQS H PAP+ + +G LTLPLSHGLS+++ + +P SS  ++  G+ K   +A A RD E+LIK+GAPHPS+MKRPRF  I EL+G++NPC  WT+EECHRRCVAFF+R T++ FPEQSK+VE +SS FFLSELQSG TL S MQPLET+V VLD I+++LP++GPRLSSGSRVIMREFLAQ+R G+A    + E + EA ETV +   T +  V P      EQ
Sbjct:  193 TLQDIAGGLQHDLQAVAQQAVAVKTQPQQSIQQLAEQPS-----------QQPMDYAEPAATEPDHTQQTLIHDADPQNQPAHAAQ---------QIVHTVATVM--PQLSH-TPDVHGVHKPEPQLETESALATAQSAQIIXXXXXXXXXXXXXXXSASTAVQDLVINKVPDGDHVRAAAEYSTKPQQQPLHHTAPVHSRRAADRSKRGSERYHASGEQLKTLIAAFEQDPTPSAGTLNYLSASIAMPMHNLVLWFKNRRARHKRTHANQSSRGGKRSYVKSGIYSRNKRTKQSQHHPAPSNMHTGALTLPLSHGLSTLAPATVPASSTGMTQGGETKGITIADAKRDFEDLIKTGAPHPSQMKRPRFVGIAELLGEENPCHSWTAEECHRRCVAFFDRTTNNVFPEQSKLVEEVSSVFFLSELQSGFTLTSTMQPLETTVAVLDGIVDRLPSDGPRLSSGSRVIMREFLAQVRTGNAMHLLLAEATPEAGETVPDGEDTEAAAVPPAEPPATEQ 685          
BLAST of Ggra9911.t1 vs. uniprot
Match: R7QDC2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDC2_CHOCR)

HSP 1 Score: 174 bits (442), Expect = 1.310e-44
Identity = 121/277 (43.68%), Postives = 160/277 (57.76%), Query Frame = 0
Query:  356 MPMHNLVLWFKNRRARHKRTHISPPS-KGGKRSYVKSGIYSR-NKRVKQ------SHHQPAPATVPS--------GGLTLPLSH-GLSSISSPI------------------PVSSIA-------LSGDAKNP---GMATASRDIEELIKSGAPHPSRMKRPRFSAIPELVGDDNPCQGWTSEECHRRCVAFFERATSS-SFPEQSKIVEHISSEFFLSELQSGLTLVSAMQPLETSVGVLDAIMEKLPAEGP--RLSSGSRVIMREFLAQIRMGSA 584
            MPMHN+VLWFKNRRARHK+ H S  + K G+RSYVKSGIY+R +K+ K       S    A A V S        G  T  ++  G  SI+S +                  P++ IA       +   AKN    G+ +  R +E+  +     P+  KR R+  + E+VGD NPC+ W ++ECHRRC AFF ++TS    PEQ+K  +  S  FFL ELQ+GLTL SAMQ LETS GVLD IM+++  EG   +LSSGSR ++REF+AQ+R G A
Sbjct:    1 MPMHNMVLWFKNRRARHKKHHPSQTAVKTGRRSYVKSGIYARASKKGKVLRDGTGSSPMMAAAAVTSEDHHAEVRGDTTREVADVGRPSIASQVETDMHQVALLAAAVEAGAPLADIAGAPAEGLMDSVAKNEVLDGIGSEKRRLEDGSRVDGMPPT--KRTRYQGVSEVVGDANPCRVWNAKECHRRCCAFFAKSTSGCEQPEQTKSAQRASEMFFLGELQNGLTLTSAMQSLETSAGVLDKIMDRIRQEGQSVKLSSGSRAVLREFVAQVRSGQA 275          
BLAST of Ggra9911.t1 vs. uniprot
Match: A0A7S1XCF6 (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XCF6_9RHOD)

HSP 1 Score: 89.0 bits (219), Expect = 1.280e-15
Identity = 83/300 (27.67%), Postives = 127/300 (42.33%), Query Frame = 0
Query:  314 RTKRGSERYHASGDQLKTLIAAFEQNPTPDASTLNYLSEAIGMPMHNLVLWFKNRRARHKRTHISPPSKGG-KRSYVKSGIYSRNKRVKQSHHQPAPATVPSGGLTLPL----------SHGLSSISSPIPVSSIALSGDAKNPGMATASRDIEEL---------IKSGAPHPSRMKRPRFSAIPELVGDDN-----------PCQGWTSEECHRRCVAFFERATSSSFPEQSKIVEHISSEFFLSELQSGLTLVSAMQPLETSVGVLDAIMEKLPAEGPRLSSGSRVIMREFLAQIRMG 582
            + ++G  R+H +  Q+K +   FE +  P    L  ++    +P+  LV+WFKNRRAR K  H     KGG K     S      +   ++ ++P+   V + G  +            S G      P  +     S   +  GM    +  EEL         ++     P   +  R   + E +   N           PC  W  +      +AF  R       +  +++E + + FFL ELQSG T+ S MQPLE S+ VL+ IM  + +    L SG+R IMREFL Q+R G
Sbjct:   20 KVQQGFRRFHPNPCQVKKMTEMFEHSRCPSTEELRGMAAEWDVPLVQLVVWFKNRRARFK-PHTE--GKGGEKEGATTSRKAMMTRTTMEAINKPSDILVRTAGTVVHKRKRSDGRVRGSDGEVRTRQPRMMVDDERSTQERREGMRVVGKGSEELRLCDEGRVGLRLDGRTPVPEEEERVEEVDEELPMGNEMIRVGKRSSHPCSEWDPDVSFEHALAFV-REWGLKDGKHMQLMEQVCNRFFLDELQSGFTISSKMQPLEDSLRVLNEIM--VDSSFDALPSGARTIMREFLCQLRSG 313          
The following BLAST results are available for this feature:
BLAST of Ggra9911.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J4N25.200e-14551.16Homeobox protein HD-5 n=1 Tax=Gracilariopsis chord... [more]
R7QDC21.310e-4443.68Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1XCF61.280e-1527.67Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 317..379
e-value: 2.8E-11
score: 53.5
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 321..374
e-value: 3.0E-11
score: 43.0
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 315..375
score: 13.053835
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 321..376
e-value: 4.3076E-12
score: 59.5645
NoneNo IPR availableGENE3D1.10.10.60coord: 313..383
e-value: 3.1E-14
score: 54.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 373..415
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..159
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 314..376

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:74369..76234 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9911.t1Ggra9911.t1Gracilaria gracilis GNS1m malemRNAtig00000887_pilon 74369..76234 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9911.t1 ID=Ggra9911.t1|Name=Ggra9911.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=622bp
MDELPLHNVPPPAPSPASIQQPPPPSSTHPSSSHSLPNPSPSSPREDCHP
PSITSPPEPSQIDDDREALPDAAPAAPDDVDGELHAAVDEQQAQPDRVHA
VAVSSQLTEASQPSLHDMASDLHHDLHAVAQHAVHVKAQPEPAASTAAQQ
ESPPMHAAETQLSEQTAQHAIEFSTATEQAQPAIVEAEHPPPPTHESQEM
MAAQPESQLVQTAVTAAADSEMQHSTAVVHALQKTEAQLDAHNPLAEEHA
SHLAHSSAFPTAAVPVSAPAAVAEYVVNKPVEDDQTRVPNEFDPKCHQSP
HEPMSISPRRMAERTKRGSERYHASGDQLKTLIAAFEQNPTPDASTLNYL
SEAIGMPMHNLVLWFKNRRARHKRTHISPPSKGGKRSYVKSGIYSRNKRV
KQSHHQPAPATVPSGGLTLPLSHGLSSISSPIPVSSIALSGDAKNPGMAT
ASRDIEELIKSGAPHPSRMKRPRFSAIPELVGDDNPCQGWTSEECHRRCV
AFFERATSSSFPEQSKIVEHISSEFFLSELQSGLTLVSAMQPLETSVGVL
DAIMEKLPAEGPRLSSGSRVIMREFLAQIRMGSAGQFAIIEGSTEAAETV
AEAHATVSQTVAPTASSTVEQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf