Ggra9911.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9911.t1
Unique NameGgra9911.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length622
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:74369..76234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog381046.XP_002554623.1
Preferred namePHO2
PFAMsHomeobox
Max annot lvl4751|Fungi
KEGG koko:K02646
KEGG Pathwayko04111,map04111
GOsGO:0000105,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006144,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009112,GO:0009113,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016043,GO:0016053,GO:0016070,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019752,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042440,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043388,GO:0043436,GO:0043565,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051174,GO:0051252,GO:0051254,GO:0051276,GO:0052803,GO:0055086,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000677,GO:2000679,GO:2001141
Evalue1.25e-05
EggNOG OGsKOG0486@1|root,KOG0486@2759|Eukaryota,3A7ZY@33154|Opisthokonta,3Q3MA@4751|Fungi,3RKNZ@4890|Ascomycota,3RRXC@4891|Saccharomycetes,3RZIP@4893|Saccharomycetaceae
Descriptionto Saccharomyces cerevisiae PHO2 (YDL106C)
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9911Ggra9911Gracilaria gracilis GNS1m malegenetig00000887_pilon 74369..76234 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9911.t1.start1Ggra9911.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 74369..74371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9911.t1.CDS1Ggra9911.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 74369..76234 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9911.t1.exon1Ggra9911.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 74369..76234 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9911.t1.stop1Ggra9911.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 76232..76234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9911.t1Ggra9911.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 74369..76234 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9911.t1 ID=Ggra9911.t1|Name=Ggra9911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=622bp
MDELPLHNVPPPAPSPASIQQPPPPSSTHPSSSHSLPNPSPSSPREDCHP
PSITSPPEPSQIDDDREALPDAAPAAPDDVDGELHAAVDEQQAQPDRVHA
VAVSSQLTEASQPSLHDMASDLHHDLHAVAQHAVHVKAQPEPAASTAAQQ
ESPPMHAAETQLSEQTAQHAIEFSTATEQAQPAIVEAEHPPPPTHESQEM
MAAQPESQLVQTAVTAAADSEMQHSTAVVHALQKTEAQLDAHNPLAEEHA
SHLAHSSAFPTAAVPVSAPAAVAEYVVNKPVEDDQTRVPNEFDPKCHQSP
HEPMSISPRRMAERTKRGSERYHASGDQLKTLIAAFEQNPTPDASTLNYL
SEAIGMPMHNLVLWFKNRRARHKRTHISPPSKGGKRSYVKSGIYSRNKRV
KQSHHQPAPATVPSGGLTLPLSHGLSSISSPIPVSSIALSGDAKNPGMAT
ASRDIEELIKSGAPHPSRMKRPRFSAIPELVGDDNPCQGWTSEECHRRCV
AFFERATSSSFPEQSKIVEHISSEFFLSELQSGLTLVSAMQPLETSVGVL
DAIMEKLPAEGPRLSSGSRVIMREFLAQIRMGSAGQFAIIEGSTEAAETV
AEAHATVSQTVAPTASSTVEQ*
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spliced messenger RNA

>Ggra9911.t1 ID=Ggra9911.t1|Name=Ggra9911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00000887_pilon:74369..76234+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAACTCCCTCTCCATAACGTCCCGCCTCCCGCTCCCTCGCCCGC
CTCTATCCAACAGCCGCCTCCGCCATCCTCCACGCATCCTTCTTCCTCGC
ATTCTTTGCCAAACCCTTCTCCCTCGTCGCCGCGCGAAGATTGTCACCCG
CCGTCCATCACCTCGCCTCCGGAGCCGTCACAGATTGACGATGACCGTGA
AGCTCTTCCGGACGCCGCGCCTGCGGCACCGGATGACGTTGACGGCGAAT
TGCACGCCGCCGTTGACGAGCAACAGGCCCAGCCCGACCGCGTGCATGCT
GTCGCCGTTTCATCGCAGCTGACCGAGGCGTCCCAACCGTCGCTTCACGA
CATGGCATCAGATTTGCATCACGACCTGCACGCCGTCGCCCAGCACGCGG
TGCATGTCAAGGCACAACCTGAACCCGCGGCTTCAACCGCTGCACAACAG
GAGTCGCCTCCCATGCACGCCGCGGAGACACAGCTTTCCGAACAAACTGC
ACAGCATGCTATCGAGTTTTCTACCGCCACTGAACAAGCGCAGCCGGCCA
TCGTTGAAGCAGAACACCCACCACCGCCTACCCATGAGTCGCAGGAGATG
ATGGCCGCACAGCCGGAGTCGCAGCTTGTGCAGACTGCTGTAACAGCGGC
AGCAGACTCGGAGATGCAGCATTCGACCGCCGTAGTCCACGCTTTGCAGA
AGACAGAGGCTCAGCTGGATGCCCATAACCCGCTTGCTGAGGAGCATGCT
TCTCACCTTGCTCATTCAAGTGCTTTTCCTACTGCTGCAGTGCCTGTGTC
GGCGCCTGCTGCTGTCGCTGAGTATGTTGTCAACAAACCCGTAGAGGATG
ACCAGACACGGGTACCAAATGAATTTGACCCAAAGTGCCACCAGTCACCA
CATGAGCCTATGTCCATTTCGCCGCGCCGTATGGCGGAGCGCACGAAGAG
AGGTTCGGAACGCTATCATGCTTCAGGTGATCAGCTGAAAACCTTGATTG
CTGCATTTGAACAGAACCCTACACCGGATGCATCTACACTCAACTATTTA
TCAGAAGCTATTGGGATGCCGATGCATAACCTTGTGCTTTGGTTCAAGAA
CCGTCGGGCGCGTCACAAGCGCACGCACATCAGTCCGCCATCGAAGGGTG
GGAAACGAAGCTATGTCAAGAGCGGAATATATTCCAGGAATAAGCGAGTC
AAACAAAGCCATCATCAACCTGCACCTGCAACTGTGCCGTCTGGCGGCCT
CACTCTGCCCCTTTCGCACGGCCTTAGTTCTATCTCATCACCCATCCCTG
TTTCGTCTATTGCACTATCCGGAGACGCAAAGAACCCTGGAATGGCAACT
GCTAGTCGCGATATCGAGGAACTAATCAAGAGTGGCGCCCCTCACCCGTC
GCGAATGAAGAGGCCTCGTTTTTCAGCTATCCCGGAACTGGTTGGTGATG
ACAATCCTTGCCAGGGCTGGACGTCGGAGGAATGCCATCGCAGATGCGTT
GCCTTTTTCGAGAGGGCAACAAGCAGTTCTTTCCCAGAGCAGTCCAAGAT
TGTCGAGCACATTAGCTCGGAGTTCTTTTTGTCAGAATTACAGAGTGGGT
TGACTCTGGTCAGCGCAATGCAACCGCTGGAAACAAGCGTTGGAGTATTG
GACGCAATAATGGAAAAGCTTCCCGCAGAAGGCCCCCGTCTCAGCTCTGG
TTCTAGAGTGATCATGCGCGAGTTTCTCGCTCAAATTCGGATGGGCAGCG
CTGGACAGTTTGCAATCATAGAAGGGTCTACAGAGGCGGCTGAAACGGTC
GCAGAAGCGCACGCTACTGTTTCCCAGACTGTGGCACCCACAGCTTCGTC
GACCGTGGAACAATGA
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protein sequence of Ggra9911.t1

>Ggra9911.t1 ID=Ggra9911.t1|Name=Ggra9911.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=622bp
MDELPLHNVPPPAPSPASIQQPPPPSSTHPSSSHSLPNPSPSSPREDCHP
PSITSPPEPSQIDDDREALPDAAPAAPDDVDGELHAAVDEQQAQPDRVHA
VAVSSQLTEASQPSLHDMASDLHHDLHAVAQHAVHVKAQPEPAASTAAQQ
ESPPMHAAETQLSEQTAQHAIEFSTATEQAQPAIVEAEHPPPPTHESQEM
MAAQPESQLVQTAVTAAADSEMQHSTAVVHALQKTEAQLDAHNPLAEEHA
SHLAHSSAFPTAAVPVSAPAAVAEYVVNKPVEDDQTRVPNEFDPKCHQSP
HEPMSISPRRMAERTKRGSERYHASGDQLKTLIAAFEQNPTPDASTLNYL
SEAIGMPMHNLVLWFKNRRARHKRTHISPPSKGGKRSYVKSGIYSRNKRV
KQSHHQPAPATVPSGGLTLPLSHGLSSISSPIPVSSIALSGDAKNPGMAT
ASRDIEELIKSGAPHPSRMKRPRFSAIPELVGDDNPCQGWTSEECHRRCV
AFFERATSSSFPEQSKIVEHISSEFFLSELQSGLTLVSAMQPLETSVGVL
DAIMEKLPAEGPRLSSGSRVIMREFLAQIRMGSAGQFAIIEGSTEAAETV
AEAHATVSQTVAPTASSTVEQ*
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mRNA from alignment at tig00000887_pilon:74369..76234+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9911.t1 ID=Ggra9911.t1|Name=Ggra9911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00000887_pilon:74369..76234+ (Gracilaria gracilis GNS1m male)
ATGGACGAACTCCCTCTCCATAACGTCCCGCCTCCCGCTCCCTCGCCCGC
CTCTATCCAACAGCCGCCTCCGCCATCCTCCACGCATCCTTCTTCCTCGC
ATTCTTTGCCAAACCCTTCTCCCTCGTCGCCGCGCGAAGATTGTCACCCG
CCGTCCATCACCTCGCCTCCGGAGCCGTCACAGATTGACGATGACCGTGA
AGCTCTTCCGGACGCCGCGCCTGCGGCACCGGATGACGTTGACGGCGAAT
TGCACGCCGCCGTTGACGAGCAACAGGCCCAGCCCGACCGCGTGCATGCT
GTCGCCGTTTCATCGCAGCTGACCGAGGCGTCCCAACCGTCGCTTCACGA
CATGGCATCAGATTTGCATCACGACCTGCACGCCGTCGCCCAGCACGCGG
TGCATGTCAAGGCACAACCTGAACCCGCGGCTTCAACCGCTGCACAACAG
GAGTCGCCTCCCATGCACGCCGCGGAGACACAGCTTTCCGAACAAACTGC
ACAGCATGCTATCGAGTTTTCTACCGCCACTGAACAAGCGCAGCCGGCCA
TCGTTGAAGCAGAACACCCACCACCGCCTACCCATGAGTCGCAGGAGATG
ATGGCCGCACAGCCGGAGTCGCAGCTTGTGCAGACTGCTGTAACAGCGGC
AGCAGACTCGGAGATGCAGCATTCGACCGCCGTAGTCCACGCTTTGCAGA
AGACAGAGGCTCAGCTGGATGCCCATAACCCGCTTGCTGAGGAGCATGCT
TCTCACCTTGCTCATTCAAGTGCTTTTCCTACTGCTGCAGTGCCTGTGTC
GGCGCCTGCTGCTGTCGCTGAGTATGTTGTCAACAAACCCGTAGAGGATG
ACCAGACACGGGTACCAAATGAATTTGACCCAAAGTGCCACCAGTCACCA
CATGAGCCTATGTCCATTTCGCCGCGCCGTATGGCGGAGCGCACGAAGAG
AGGTTCGGAACGCTATCATGCTTCAGGTGATCAGCTGAAAACCTTGATTG
CTGCATTTGAACAGAACCCTACACCGGATGCATCTACACTCAACTATTTA
TCAGAAGCTATTGGGATGCCGATGCATAACCTTGTGCTTTGGTTCAAGAA
CCGTCGGGCGCGTCACAAGCGCACGCACATCAGTCCGCCATCGAAGGGTG
GGAAACGAAGCTATGTCAAGAGCGGAATATATTCCAGGAATAAGCGAGTC
AAACAAAGCCATCATCAACCTGCACCTGCAACTGTGCCGTCTGGCGGCCT
CACTCTGCCCCTTTCGCACGGCCTTAGTTCTATCTCATCACCCATCCCTG
TTTCGTCTATTGCACTATCCGGAGACGCAAAGAACCCTGGAATGGCAACT
GCTAGTCGCGATATCGAGGAACTAATCAAGAGTGGCGCCCCTCACCCGTC
GCGAATGAAGAGGCCTCGTTTTTCAGCTATCCCGGAACTGGTTGGTGATG
ACAATCCTTGCCAGGGCTGGACGTCGGAGGAATGCCATCGCAGATGCGTT
GCCTTTTTCGAGAGGGCAACAAGCAGTTCTTTCCCAGAGCAGTCCAAGAT
TGTCGAGCACATTAGCTCGGAGTTCTTTTTGTCAGAATTACAGAGTGGGT
TGACTCTGGTCAGCGCAATGCAACCGCTGGAAACAAGCGTTGGAGTATTG
GACGCAATAATGGAAAAGCTTCCCGCAGAAGGCCCCCGTCTCAGCTCTGG
TTCTAGAGTGATCATGCGCGAGTTTCTCGCTCAAATTCGGATGGGCAGCG
CTGGACAGTTTGCAATCATAGAAGGGTCTACAGAGGCGGCTGAAACGGTC
GCAGAAGCGCACGCTACTGTTTCCCAGACTGTGGCACCCACAGCTTCGTC
GACCGTGGAACAATGA
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Coding sequence (CDS) from alignment at tig00000887_pilon:74369..76234+

>Ggra9911.t1 ID=Ggra9911.t1|Name=Ggra9911.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1866bp|location=Sequence derived from alignment at tig00000887_pilon:74369..76234+ (Gracilaria gracilis GNS1m male)
ATGGACGAACTCCCTCTCCATAACGTCCCGCCTCCCGCTCCCTCGCCCGC
CTCTATCCAACAGCCGCCTCCGCCATCCTCCACGCATCCTTCTTCCTCGC
ATTCTTTGCCAAACCCTTCTCCCTCGTCGCCGCGCGAAGATTGTCACCCG
CCGTCCATCACCTCGCCTCCGGAGCCGTCACAGATTGACGATGACCGTGA
AGCTCTTCCGGACGCCGCGCCTGCGGCACCGGATGACGTTGACGGCGAAT
TGCACGCCGCCGTTGACGAGCAACAGGCCCAGCCCGACCGCGTGCATGCT
GTCGCCGTTTCATCGCAGCTGACCGAGGCGTCCCAACCGTCGCTTCACGA
CATGGCATCAGATTTGCATCACGACCTGCACGCCGTCGCCCAGCACGCGG
TGCATGTCAAGGCACAACCTGAACCCGCGGCTTCAACCGCTGCACAACAG
GAGTCGCCTCCCATGCACGCCGCGGAGACACAGCTTTCCGAACAAACTGC
ACAGCATGCTATCGAGTTTTCTACCGCCACTGAACAAGCGCAGCCGGCCA
TCGTTGAAGCAGAACACCCACCACCGCCTACCCATGAGTCGCAGGAGATG
ATGGCCGCACAGCCGGAGTCGCAGCTTGTGCAGACTGCTGTAACAGCGGC
AGCAGACTCGGAGATGCAGCATTCGACCGCCGTAGTCCACGCTTTGCAGA
AGACAGAGGCTCAGCTGGATGCCCATAACCCGCTTGCTGAGGAGCATGCT
TCTCACCTTGCTCATTCAAGTGCTTTTCCTACTGCTGCAGTGCCTGTGTC
GGCGCCTGCTGCTGTCGCTGAGTATGTTGTCAACAAACCCGTAGAGGATG
ACCAGACACGGGTACCAAATGAATTTGACCCAAAGTGCCACCAGTCACCA
CATGAGCCTATGTCCATTTCGCCGCGCCGTATGGCGGAGCGCACGAAGAG
AGGTTCGGAACGCTATCATGCTTCAGGTGATCAGCTGAAAACCTTGATTG
CTGCATTTGAACAGAACCCTACACCGGATGCATCTACACTCAACTATTTA
TCAGAAGCTATTGGGATGCCGATGCATAACCTTGTGCTTTGGTTCAAGAA
CCGTCGGGCGCGTCACAAGCGCACGCACATCAGTCCGCCATCGAAGGGTG
GGAAACGAAGCTATGTCAAGAGCGGAATATATTCCAGGAATAAGCGAGTC
AAACAAAGCCATCATCAACCTGCACCTGCAACTGTGCCGTCTGGCGGCCT
CACTCTGCCCCTTTCGCACGGCCTTAGTTCTATCTCATCACCCATCCCTG
TTTCGTCTATTGCACTATCCGGAGACGCAAAGAACCCTGGAATGGCAACT
GCTAGTCGCGATATCGAGGAACTAATCAAGAGTGGCGCCCCTCACCCGTC
GCGAATGAAGAGGCCTCGTTTTTCAGCTATCCCGGAACTGGTTGGTGATG
ACAATCCTTGCCAGGGCTGGACGTCGGAGGAATGCCATCGCAGATGCGTT
GCCTTTTTCGAGAGGGCAACAAGCAGTTCTTTCCCAGAGCAGTCCAAGAT
TGTCGAGCACATTAGCTCGGAGTTCTTTTTGTCAGAATTACAGAGTGGGT
TGACTCTGGTCAGCGCAATGCAACCGCTGGAAACAAGCGTTGGAGTATTG
GACGCAATAATGGAAAAGCTTCCCGCAGAAGGCCCCCGTCTCAGCTCTGG
TTCTAGAGTGATCATGCGCGAGTTTCTCGCTCAAATTCGGATGGGCAGCG
CTGGACAGTTTGCAATCATAGAAGGGTCTACAGAGGCGGCTGAAACGGTC
GCAGAAGCGCACGCTACTGTTTCCCAGACTGTGGCACCCACAGCTTCGTC
GACCGTGGAACAATGA
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