Ggra9853.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9853.t1
Unique NameGgra9853.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length566
Homology
BLAST of Ggra9853.t1 vs. uniprot
Match: A0A836DBR2 (UBI4-Ubiquitin n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836DBR2_9ROSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.800e-14
Identity = 53/110 (48.18%), Postives = 63/110 (57.27%), Query Frame = 0
Query:  199 PDQKRLILAEKHLIWPQSFRLQYPERIYFAPAAPSSRGDADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYSVQHASNSH 308
            PDQ+RLI A K L           + +Y  P +PS R  AD  ++ TGKTI LEVES DTI+NV  KIQDKE IP  QQR IFA     +  GRT   S Y++Q  S  H
Sbjct:   81 PDQQRLIFAGKQL----------EDGLYSPPCSPSPRRHADLCQDSTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTL--SDYNIQKESTLH 176          
BLAST of Ggra9853.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: polyubiquitin n=2 Tax=Pentapetalae TaxID=1437201 RepID=UPI0010AA7962 (LOW QUALITY PROTEIN: polyubiquitin n=2 Tax=Pentapetalae TaxID=1437201 RepID=UPI0010AA7962)

HSP 1 Score: 81.6 bits (200), Expect = 8.640e-13
Identity = 54/113 (47.79%), Postives = 66/113 (58.41%), Query Frame = 0
Query:  199 PDQKRLILAEKHLIWPQSFRLQYPERIYFAPAAPSSRGDADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYSVQHASNSHYTL 311
            PDQ+RLI A K L   ++      +++YFA    S R  A F + +TGKTI LEVES DTI+NV  KIQDKE IP  QQR IFA     +  GRT A   Y++Q  S  H  L
Sbjct:  266 PDQQRLIFAGKQLEDGRTLADYNIQKVYFALGPASERWHAIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLAD--YNIQKESTLHLVL 374          
BLAST of Ggra9853.t1 vs. uniprot
Match: A0A2K5BYE9 (Ubiquitin B n=2 Tax=Aotus nancymaae TaxID=37293 RepID=A0A2K5BYE9_AOTNA)

HSP 1 Score: 70.5 bits (171), Expect = 9.350e-11
Identity = 52/114 (45.61%), Postives = 60/114 (52.63%), Query Frame = 0
Query:  199 PDQKRLILAEKHLIWPQSFRLQYPE-RIYFAPAAPSSRGDADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYSVQHASNSHYTL 311
            PDQ+RLI A K L  P  F    P+  I      P     + +   +TGKTI LEVE  DTIENV  KIQDKE IP  QQR IFA     +  GRT   S Y++Q  S  H  L
Sbjct:   38 PDQQRLIFAGKQLERPALF----PDYNIQKESTLPPVGMRSSYERRLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTL--SDYNIQKESTLHLVL 143          
BLAST of Ggra9853.t1 vs. uniprot
Match: A0A7R8CE24 (UBC n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CE24_LEPSM)

HSP 1 Score: 75.9 bits (185), Expect = 1.050e-10
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 0
Query:  213 WPQSFRLQYPERIYFAPAAPSSRGDADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYSVQHASNSHYTL 311
            W    RLQ+P+ I+ + +    R +ADF + +TGKTI LEVE+ DTIENV  KIQDKE IP  QQR IFA     +  GRT   S Y++Q  S  H  L
Sbjct:  238 WTYFVRLQHPKGIHPSFSIKIERRNADFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTL--SDYNIQKESTLHLVL 332          
BLAST of Ggra9853.t1 vs. uniprot
Match: A0A3G4ZVK3 (Polyubiquitin n=2 Tax=unclassified Mimiviridae TaxID=985780 RepID=A0A3G4ZVK3_9VIRU)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-10
Identity = 50/116 (43.10%), Postives = 63/116 (54.31%), Query Frame = 0
Query:  199 PDQKRLILAEKHLIWPQS---FRLQYPERIYFAPAAPSSRGDADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYSVQHASNSHYTL 311
            PDQ+RLI A K L   +S   + +Q    ++         G   F + +TGKTI L+VES D+IENV  KIQDKE IP  QQR IFA     +  GRT A   Y++Q  S  H  L
Sbjct:   40 PDQQRLIFAGKQLEDGRSLADYNIQKESTLHLVLRLRGGSGIQIFVKTLTGKTITLDVESSDSIENVKTKIQDKEGIPPDQQRLIFAGKQLED--GRTLAD--YNIQKESTLHLVL 151          
BLAST of Ggra9853.t1 vs. uniprot
Match: A0A835QLC4 (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QLC4_VANPL)

HSP 1 Score: 73.2 bits (178), Expect = 1.570e-10
Identity = 46/84 (54.76%), Postives = 52/84 (61.90%), Query Frame = 0
Query:  199 PDQKRLILAEKHLIWPQSFRLQYPERIYFAPAAPSSRGDADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFA 282
            PDQ+RLI A K L           ERI+ AP AP+      F + +TGKTI LEVES DTI+NV  KIQDKE IP  QQR IFA
Sbjct:  140 PDQQRLIFAGKQL---------EDERIHPAPCAPAQGRMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 214          
BLAST of Ggra9853.t1 vs. uniprot
Match: A0A1J3JU10 (Polyubiquitin (Fragment) n=9 Tax=Eukaryota TaxID=2759 RepID=A0A1J3JU10_NOCCA)

HSP 1 Score: 70.1 bits (170), Expect = 1.840e-10
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 0
Query:  199 PDQKRLILAEKHLIWPQS---FRLQYPERIYFAPAAPSSRGDADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYSVQHASNSHYTL 311
            PDQ+RLI A K L   ++   + +Q    ++         G   F + +TGKTI L+VES D+IENV +KIQDKE IP  QQR IFA     +  GRT A   Y++Q  S  H  L
Sbjct:   45 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSGMQIFVKTLTGKTITLDVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLED--GRTLAD--YNIQKESTLHLVL 156          
BLAST of Ggra9853.t1 vs. uniprot
Match: A0A811NA92 (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811NA92_9POAL)

HSP 1 Score: 69.3 bits (168), Expect = 4.320e-10
Identity = 43/75 (57.33%), Postives = 48/75 (64.00%), Query Frame = 0
Query:  237 DADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYSVQHASNSHYTL 311
            DAD RE+  GKTI LEVES DTI+NV  KIQDKE IPS QQR IFA     +  GRT A   Y++Q  S  H  L
Sbjct:   37 DADLREDADGKTITLEVESSDTIDNVKAKIQDKEGIPSDQQRLIFAGKQLDD--GRTLAD--YNIQKESTLHLVL 107          
BLAST of Ggra9853.t1 vs. uniprot
Match: A0A1J3CZC9 (Ubiquitin-60S ribosomal protein L40 (Fragment) n=6 Tax=Eukaryota TaxID=2759 RepID=A0A1J3CZC9_NOCCA)

HSP 1 Score: 70.1 bits (170), Expect = 4.750e-10
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 0
Query:  199 PDQKRLILAEKHLIWPQS---FRLQYPERIYFAPAAPSSRGDADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYSVQHASNSHYTL 311
            PDQ+RLI A K L   ++   + +Q    ++         G   F + +TGKTI L+VES D+IENV +KIQDKE IP  QQR IFA     +  GRT A   Y++Q  S  H  L
Sbjct:   44 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSGMQIFVKTLTGKTITLDVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLED--GRTLAD--YNIQKESTLHLVL 155          
BLAST of Ggra9853.t1 vs. uniprot
Match: A0A067QUA6 (Ubiquitin n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QUA6_ZOONE)

HSP 1 Score: 68.6 bits (166), Expect = 4.810e-10
Identity = 51/116 (43.97%), Postives = 63/116 (54.31%), Query Frame = 0
Query:  199 PDQKRLILAEKHLIWPQS---FRLQYPERIYFAPAAPSSRGDADFREEVTGKTIILEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYSVQHASNSHYTL 311
            PDQ+RLI A K L   ++   + +Q    ++         G   F + +TGKTI LEVE  DTIENV  KIQDKE IP GQQR IFA     +  GRT   S Y++Q  S  H  L
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG--GMQIFVKTLTGKTITLEVEPADTIENVKAKIQDKEGIPPGQQRLIFAGKQLED--GRTL--SDYNIQKESTLHLVL 147          
The following BLAST results are available for this feature:
BLAST of Ggra9853.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836DBR24.800e-1448.18UBI4-Ubiquitin n=1 Tax=Salix suchowensis TaxID=127... [more]
LOW QUALITY PROTEIN: polyubiquitin n=2 Tax=Pentapetalae TaxID=1437201 RepID=UPI0010AA79628.640e-1347.79LOW QUALITY PROTEIN: polyubiquitin n=2 Tax=Pentape... [more]
A0A2K5BYE99.350e-1145.61Ubiquitin B n=2 Tax=Aotus nancymaae TaxID=37293 Re... [more]
A0A7R8CE241.050e-1048.48UBC n=1 Tax=Lepeophtheirus salmonis TaxID=72036 Re... [more]
A0A3G4ZVK31.180e-1043.10Polyubiquitin n=2 Tax=unclassified Mimiviridae Tax... [more]
A0A835QLC41.570e-1054.76Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A1J3JU101.840e-1042.24Polyubiquitin (Fragment) n=9 Tax=Eukaryota TaxID=2... [more]
A0A811NA924.320e-1057.33Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
A0A1J3CZC94.750e-1042.24Ubiquitin-60S ribosomal protein L40 (Fragment) n=6... [more]
A0A067QUA64.810e-1043.97Ubiquitin n=1 Tax=Zootermopsis nevadensis TaxID=13... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956Ubiquitin domainPRINTSPR00348UBIQUITINcoord: 247..267
score: 69.31
coord: 268..288
score: 50.17
NoneNo IPR availableGENE3D3.10.20.90coord: 242..312
e-value: 8.7E-12
score: 46.5
NoneNo IPR availablePANTHERPTHR10666:SF364SUBFAMILY NOT NAMEDcoord: 244..308
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 244..308
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..164
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 196..565
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 176..195
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..108
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 165..175
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..127
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 128..146
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 244..282

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:125727..136279 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9853.t1Ggra9853.t1Gracilaria gracilis GNS1m malemRNAtig00000170_pilon 125727..136279 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9853.t1 ID=Ggra9853.t1|Name=Ggra9853.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=566bp
MDDPVLIASYLLKSNTFKDKLVELLEGSSEEYSEFSYNNLINLLTKLLWV
NVLPFDVTDPLNVSICRKISHKFRWFMDHNLNTLKIVSIAQEYQKRMYNN
FVKHIRREVTNTACEFVTVFVHCIFLYEGKVLLNLFIKLDNPQEFKVYIG
TLTVFYSEVTYNVFAEMMQSAIEDYISLASVTAIAGNSFSVYYLFIRSPD
QKRLILAEKHLIWPQSFRLQYPERIYFAPAAPSSRGDADFREEVTGKTII
LEVESLDTIENVTKKIQDKEVIPSGQQRPIFAIASFRNRGGRTSAPSKYS
VQHASNSHYTLVADVPNERPSYIHILPIIHIADPPSSPDLQLTLQNLHPE
PKVLVLELCAARTDLLQQNLPLTSATDKTPHHKHRPLSFQTLLDIILRRQ
VATLQKALNPTGPSGSSEQLRKAVQTWSQQLKNPRHSIILGDRRIDRTLK
QWANEATTFEKLILLLDATMAPLFMHLRPSWRQMLQENEQIDRWRSRLAS
RAPAAFQALCITRELHMTWAVRDSAPVLNVDSVALVCGSLHATAIIEVLK
NGQLIDIESVLNADQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin_dom
IPR029071Ubiquitin-like_domsf