Ggra9767.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9767.t1
Unique NameGgra9767.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length427
Homology
BLAST of Ggra9767.t1 vs. uniprot
Match: A0A2V3IMD5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 352 bits (902), Expect = 1.700e-114
Identity = 180/408 (44.12%), Postives = 259/408 (63.48%), Query Frame = 0
Query:    3 NKRSYWNNGLDGIIKEHLLEHQSYLNWSCSSMRLFHHSNTTNFNDFVSIMHDCT-NKTTGRIIDSPECLCDIGVAGWFQTSSRFGLVDFLPPFAHNRYVVFTHVSEATVSGKVWFFIQTFDGKAWASILGLFLMFSFLKILDKRFAVPSRFEPLPKTSPRFRRYLHYLTKSNIPFRLRKAIESTVMRMLMQSDESVV---------------------------ASMTASLVQESIEARFQSVSDLLSCRVDPSDVCILSGGALETYWKNSIAIDECHIGKPPKYFNSYATLFEAVKDGRCKYAVVVDAAITSAIREKYCGDFVVVGKPLWSGGLSMLLPKGSPLTEAMSRATLDLLGNQTSTNLDLYMNKLPPCKMEGDTKLSFDKLRPFFIIAYSFGVVLFLAMVL 382
            N R + NNG+DG + E++ E Q +L W CSS+ LF H NT+ FN F+  MH+CT N++TG  + S  C CDIG+ GWFQ   R+G VDFLPPF H+RY V THVS    SG++ FF++TFD  +W +I+ L  +F+ LK+LD RFAV   + PL   S R RR LH+L K    +RLRKA +S+V R+++Q D  VV                           ASMTASLVQE I + ++S  D  SC++ PSDVC L GGALE +W  +IA   CH G P +Y ++Y  +++ +  G+CK+++ +++ IT+ IR + CG  V++ +PL++ GLSM++PKGS LTEAMS+AT+ LL +Q S+ L+ ++ K P C  +  + L+F KL+ FFI+A+S    +   M+L
Sbjct:   10 NDRKFSNNGIDGAVSEYVSELQGFLGWRCSSVTLFQHQNTSGFNAFIEQMHECTTNQSTG--VSSNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFAVAEPYTPLSGVS-RIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLL 414          
BLAST of Ggra9767.t1 vs. uniprot
Match: A0A2V3IME4 (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 337 bits (863), Expect = 4.690e-108
Identity = 173/405 (42.72%), Postives = 242/405 (59.75%), Query Frame = 0
Query:    5 RSYWNNGLDGIIKEHLLEHQSYLNWSCSSMRLFHHSNTTNFNDFVSIMHDCTNKTTGRIIDSPECLCDIGVAGWFQTSSRFGLVDFLPPFAHNRYVVFTHVSEATVSGKVWFFIQTFDGKAWASILGLFLMFSFLKILDKRFAVPSRFEPLPKTSPRFRRYLHYLTKSNIPFRLRKAIESTVMRMLMQSDESVV---------------------------ASMTASLVQESIEARFQSVSDLLSCRVDPSDVCILSGGALETYWKNSIAIDECHIGKPPKYFNSYATLFEAVKDGRCKYAVVVDAAITSAIREKYCGDFVVVGKPLWSGGLSMLLPKGSPLTEAMSRATLDLLGNQTSTNLDLYMNKLPPCKMEGDTKLSFDKLRPFFIIAYSFGVVLFLAMVL 382
            R+Y N G+ GII ++L E Q YLNWSCSS++ +     T+FN FV +M DC+    G + + P C CDIG++GWFQ   RF  VDFLPPF  + Y V  H+S + VSG+  FFI TFD  AW SI GL L+FS +K  D++F     FE L +T+PR +R++H L K    +R R+A++ST  RM++  D  VV                           ASMTASLVQE++ A FQS+ D  +CR+ P++VC+  GGALE +W  SIAI+ CH  + P + +SY  LF AV +  CKY +++++   +AI  KYCG  +   KP++SGGL+M+LPK S LT+ MS ATL +     +  ++ Y   +P C +  +T L+F KLR FF IA   G  L L  ++
Sbjct:   53 RTYANGGVSGIIAQYLREMQGYLNWSCSSVQHYTGGKQTSFNHFVRMMEDCSEN--GAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAIEVCHKQRQPFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFFGIALCTGAFLLLLRII 455          
BLAST of Ggra9767.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 299 bits (766), Expect = 9.740e-93
Identity = 160/409 (39.12%), Postives = 240/409 (58.68%), Query Frame = 0
Query:    3 NKRSYWNNGLDGIIKEHLLEHQSYLNWSCSSMRLFHHSNTTNFNDFVSIMHDCTNKTTGRIIDSPECLCDIGVAGWFQTSSRFGLVDFLPPFAHNRYVVFTHVSEATVSGKVWFFIQTFDGKAWASILGLFLMFSFLKILDKRFAVPSRFEPLPKTSPRFRRYLHYLTKSNIPFRLRKAIESTVMRMLMQSD---------------ESVV------------ASMTASLVQESIEARFQSVSDLLSCRVDPSDVCILSGGALETYWKNSIAIDE-CHIGKPPKYFNSYATLFEAVKDGRCKYAVVVDAAITSAIREKYCGDFVVVGKPLWSGGLSMLLPKGSPLTEAMSRATLDLLGNQTSTNLDLYMNKLPPCKMEGDTKLSFDKLRPFFIIAYSFGVVLFLAMVLV 383
            N R+Y N G+DGII  +L + Q +LNW+CSS++ +   +TT FN+F+++M  C+    G I D P C CDIG+ GWF  S RFG VDFLPPF ++ Y V  H+S++ VSG+  FFI TFD + W  I GL L+F+ +++    F   +R++PL  T    RR  H+L      +RLR +I+    RM++  +               ++VV            ASMTAS+VQE++ + FQS  D  +CR+DP DVC+  GG+ +TYW   +A +  CH G+ P    SY  +F+ V++  C++ +++++ + S I  KYCG  +  G P+++GGL+M+LPK S  TE MS ATL +    T  +L+ + +    C  E  T L F KL+ FFIIA+  G  LFL +V++
Sbjct:   51 NDRNYANLGIDGIIANYLNQMQGFLNWTCSSVQRYSDGSTTGFNNFITMMERCSEN--GTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFSA-FGDHARYQPLEPTVTPIRRIAHFLYNHPFFYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRSPHLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTGF-LFLTVVVI 455          
BLAST of Ggra9767.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 270 bits (689), Expect = 3.430e-82
Identity = 154/395 (38.99%), Postives = 227/395 (57.47%), Query Frame = 0
Query:    6 SYWNNGLDGIIKEHLLEHQSYLNWSCSSMRLFHHSNTTNFNDFVSIMHDCTNKTTGRIIDSPECLCDIGVAGWFQTSSRFGLVDFLPPFAHNRYVVFTHVSEATVSGKVWFFIQTFDGKAWASILGLFLMFSFLKILDKRFA-VPSRFEPLPKTSPRFRRYLHYL-TKSNIPFRLRKAIESTVMRMLMQSDESVV---------------------------ASMTASLVQESIEARFQSVSDLLSCRVDPSDVCILSGGALETYWKNSIAIDECHI-GKPPKYFN-SYATLFEAVKDGRCKYAVVVDAAITSAIREKYCGDFVVVGKPLWSGGLSMLLPKGSPLTEAMSRATLDLLGNQTSTNLDLYMNKLPPCKMEGDTKLSFDKLRPFFIIA 369
            +Y NNG++GII ++L E Q+ L+W CS    +   + T+FN F+ +M +CT    G I D P C C+IG+ GWF ++ R   VD LPPF ++   V  HVS    SG   FF+ TFD ++W  +  + ++F+  K LD+RFA +PS  EP    S  + R LH+L T  N   RL  +I ST +R+++QSD  +V                           ASMTA+LVQE++ + +QSV DL +CR+ P DVC+  G A+ T+W ++IA  +CH   K   YF  S+    +AVK+G CK+ +V+D+ I  AI  KYCG  +  G+P+++GGLSM+LPK S LT+AM  ATL L    ++ +L  Y   +  C     + L+F+KL+  F+ A
Sbjct:   52 TYSNNGINGIITKYLTEMQALLDWQCSEFIPYVEGDGTSFNRFIDMMDNCTQN--GAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEPNAANS--WGRCLHFLRTNWN---RLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYGDCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFA 439          
BLAST of Ggra9767.t1 vs. uniprot
Match: R7Q0P8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0P8_CHOCR)

HSP 1 Score: 130 bits (328), Expect = 1.820e-31
Identity = 67/161 (41.61%), Postives = 96/161 (59.63%), Query Frame = 0
Query:   45 FNDFVSIMHDCTNKTTGRIIDSPECLCDIGVAGWFQTSSRFGLVDFLPPFAHNRYVVFTHVSEATVSGKVWFFIQTFDGKAWASILGLFLMFSFLKILDKRFAVPS-RFEPLPKTSPRFRRYLHYLTKSNIPFRLRKAIESTVMRMLMQSDESVVASMTAS 204
            FN  V  M  C  +  G + + P+C CD+ V GW ++ +R G VDFLPPF  +   + THV E +V+    FF+  F    W  ++ L ++F+FLK+LD+RF  P   + PLP + PR RR  HYL KS IP+RLRKA++ST+ RM+  S+   V    +S
Sbjct:   93 FNSIVEKMDRCVTEE-GTMREDPDCNCDMAVGGWMESDTRLGKVDFLPPFLIDGIGIATHVDETSVASAGAFFLTAFSLAVWGLVVMLSVVFTFLKMLDRRFVPPDDSYTPLPASEPRLRRIRHYLLKSRIPYRLRKALQSTLSRMVGFSNSDPVTDKESS 252          
BLAST of Ggra9767.t1 vs. uniprot
Match: R7QE12 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE12_CHOCR)

HSP 1 Score: 114 bits (286), Expect = 8.430e-27
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 0
Query:   73 IGVAGWFQTSSRFGLVDFLPPFAHNRYVVFTHVSEATVSGKVWFFIQTFDGKAWASILGLFLMFSFLKILDKRFAVPSR-FEPLPKTSPRFRRYLHYLTKSNIPFRLRKAIESTVMRMLMQSDESVVASMTAS 204
            + V GWF+   RF  VDFLPPFA +   +  H    + +    FFI  F    W  I+GL  +F+FLK+LD+RF  P   ++PLP+TS R RR  HYL KS IP+RLRKA++ST+ RM+ Q     +   T+S
Sbjct:    1 MAVGGWFRNPERFRRVDFLPPFAIDGLSIVVHTDNTSSASAGAFFITAFSTTVWFFIVGLVCVFTFLKMLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTLSRMVGQGGYDPIEGKTSS 133          
The following BLAST results are available for this feature:
BLAST of Ggra9767.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IMD51.700e-11444.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IME44.690e-10842.72Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD49.740e-9339.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUK73.430e-8238.99Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7Q0P81.820e-3141.61Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QE128.430e-2744.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 205..307
e-value: 8.8E-7
score: 30.6
NoneNo IPR availableGENE3D3.40.190.10coord: 308..333
e-value: 8.8E-7
score: 30.6
NoneNo IPR availablePANTHERPTHR18966IONOTROPIC GLUTAMATE RECEPTORcoord: 63..380
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..142
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 143..364
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 365..383
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..124
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 384..426
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 71..333
NoneNo IPR availableTMHMMTMhelixcoord: 365..384
IPR001638Solute-binding protein family 3/N-terminal domain of MltFPFAMPF00497SBP_bac_3coord: 71..335
e-value: 9.2E-6
score: 25.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000067_piloncontigtig00000067_pilon:115013..116723 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9767.t1Ggra9767.t1Gracilaria gracilis GNS1m malemRNAtig00000067_pilon 115013..116723 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9767.t1 ID=Ggra9767.t1|Name=Ggra9767.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=427bp
MQNKRSYWNNGLDGIIKEHLLEHQSYLNWSCSSMRLFHHSNTTNFNDFVS
IMHDCTNKTTGRIIDSPECLCDIGVAGWFQTSSRFGLVDFLPPFAHNRYV
VFTHVSEATVSGKVWFFIQTFDGKAWASILGLFLMFSFLKILDKRFAVPS
RFEPLPKTSPRFRRYLHYLTKSNIPFRLRKAIESTVMRMLMQSDESVVAS
MTASLVQESIEARFQSVSDLLSCRVDPSDVCILSGGALETYWKNSIAIDE
CHIGKPPKYFNSYATLFEAVKDGRCKYAVVVDAAITSAIREKYCGDFVVV
GKPLWSGGLSMLLPKGSPLTEAMSRATLDLLGNQTSTNLDLYMNKLPPCK
MEGDTKLSFDKLRPFFIIAYSFGVVLFLAMVLVPQKCAEECGTKEACALR
ARVDKGRLSCTASSSSTEVSGNESTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001638Solute-binding_3/MltF_N