Ggra9543.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9543.t1
Unique NameGgra9543.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length565
Homology
BLAST of Ggra9543.t1 vs. uniprot
Match: A0A2V3IH14 (Protein NEDD1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH14_9FLOR)

HSP 1 Score: 585 bits (1508), Expect = 2.250e-202
Identity = 347/571 (60.77%), Postives = 425/571 (74.43%), Query Frame = 0
Query:    1 MSPSPYLLSLSDDALAVHDQSLRVVEPSDLHSDAVAAFSSSSNAVAIASSPSWNASHVTVFTHSG-RRQLETAASRVTKLALCPNTTFVALADADNTVQLLNVHSHQSGQFSLSSRVLSLSFDSQSTLLSVCTSKTIILISLPTLRQISEITPTSATRSFPRASTLRTCLTSAAISPLHSLLASSDDTGCVTVYDISVPSTPHTHARFTSALRTPATTMCFSSTGILAVAGFDKHIRLYDSHLKTLLFSIAITARPTALAFRENVIAVATTNSTISLIEADVNENSFVYNARTETSESHTTALLLCPPSVSLST-VPTSADHSPKQDVDPLSQTFSDVESFLSRLPPLPPDKQSKQAQSSKRLHQRRSLPLLSKQESDMHCEQVRAAQLPPHLSASFLTDEQG-----SPPSSAGTASPVSRSVSRKHSQNRQDDTDSFVERDCSPEGSPLLRSVSGQGASVDRRRRSEEFFNIGAPVLRRAGVGKVPEGEQENEVMNLFRNVLRQEMDVIRTDLHNDIVSIHSELVLLASAQSRELKEVVKERDEKVMRLETEVRRLKADNLRLRKKYGL 564
            MS SPYLLSLSDD ++ HD++LR+ EP      +  AF+S+++A+A+ASS     S + V  HS  +  L    S VTKLAL P+T F+A A   NTV L N+ SH++ ++S+ SRVLSLS DS +++LS+CTSKTI+L+S+    Q+S+ITPTSATRSFPRASTLRT LT AA SP+ SLLASSDDTGCVTVYD   PS+  THARFTSALR PATT+ FS+TG+LAVAGFDKHIRLYDS L TLLFSIAI A  TAL+FR++V+AVA T+S+I+LI+ADV++NSF Y AR+E S++HT ALLLCPPSV+LST     A  +  Q VDPLS+TFSDVE FLSRLPP P DK S     SKRL  RRS+P+LS        +Q +AAQLP HLSASFLTDEQ      SPPSSAG +SP++RSVSRKHS     D+ SF     S E SPLL S++ +    +R + SEE F+  A VLR AGV ++PE  ++  +++ FR++LRQEMDVIRTDLHNDI+ IHSE+VLLA+ QSRELK VVKERD  V RLE EVRRLKADNLRLRKKY L
Sbjct:    1 MSNSPYLLSLSDDTVSFHDEALRLAEPPPQFDPSATAFASNAHAIAVASSSGLEGSRIHVVQHSSPQHTLSAGHSAVTKLALSPDTRFLAAAYPHNTVHLFNITSHETFEYSVPSRVLSLSLDSNNSILSICTSKTIVLLSVTDFEQLSDITPTSATRSFPRASTLRTSLTCAAFSPIKSLLASSDDTGCVTVYDTENPSSLRTHARFTSALRAPATTLAFSTTGVLAVAGFDKHIRLYDSALNTLLFSIAIAAPATALSFRDDVLAVAGTDSSIALIQADVDDNSFTYIARSEASQAHTVALLLCPPSVTLSTRAKHDAGDALSQQVDPLSKTFSDVEGFLSRLPPRPRDKHSSSV--SKRLTPRRSMPILSTPPLISQHDQRKAAQLPVHLSASFLTDEQDEEASRSPPSSAGASSPLNRSVSRKHSHAMSHDSTSFDSEHSSREHSPLLASIAEE--EPERNQSSEELFDGSASVLREAGVTRLPEAGED--LIHQFRSMLRQEMDVIRTDLHNDILGIHSEIVLLATTQSRELKNVVKERDATVSRLENEVRRLKADNLRLRKKYEL 565          
BLAST of Ggra9543.t1 vs. uniprot
Match: R7QH06 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QH06_CHOCR)

HSP 1 Score: 70.9 bits (172), Expect = 2.740e-9
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 0
Query:  493 FRNVLRQEMDVIRTDLHNDIVSIHSELVLLASAQSRELKEVVKERDEKVMRLETEVRRLKADNLRLRKKYGL 564
             R ++ QE+DV++ DL +D+++IHSE+++ ++ QS+E K    ERD +V +LE EV RL  DN RLR++YGL
Sbjct:  423 LRQMMSQELDVVKADLRSDVLNIHSEMIVTSARQSQEFKAAFLERDRRVKQLEKEVHRLHEDNERLRRQYGL 494          
The following BLAST results are available for this feature:
BLAST of Ggra9543.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IH142.250e-20260.77Protein NEDD1 n=1 Tax=Gracilariopsis chorda TaxID=... [more]
R7QH062.740e-947.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 527..561
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 420..435
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 393..419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..453
NoneNo IPR availablePANTHERPTHR44414PROTEIN NEDD1coord: 17..276
NoneNo IPR availableCDDcd14686bZIPcoord: 522..561
e-value: 0.00123236
score: 35.2137
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 103..140
e-value: 27.0
score: 7.9
coord: 54..101
e-value: 6.4
score: 11.9
coord: 200..239
e-value: 0.21
score: 20.7
coord: 152..194
e-value: 4.9
score: 12.6
coord: 242..278
e-value: 490.0
score: 0.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 165..333
e-value: 4.9E-13
score: 51.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..164
e-value: 1.3E-8
score: 36.0
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 67..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000150_piloncontigtig00000150_pilon:16746..18440 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9543.t1Ggra9543.t1Gracilaria gracilis GNS1m malemRNAtig00000150_pilon 16746..18440 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9543.t1 ID=Ggra9543.t1|Name=Ggra9543.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=565bp
MSPSPYLLSLSDDALAVHDQSLRVVEPSDLHSDAVAAFSSSSNAVAIASS
PSWNASHVTVFTHSGRRQLETAASRVTKLALCPNTTFVALADADNTVQLL
NVHSHQSGQFSLSSRVLSLSFDSQSTLLSVCTSKTIILISLPTLRQISEI
TPTSATRSFPRASTLRTCLTSAAISPLHSLLASSDDTGCVTVYDISVPST
PHTHARFTSALRTPATTMCFSSTGILAVAGFDKHIRLYDSHLKTLLFSIA
ITARPTALAFRENVIAVATTNSTISLIEADVNENSFVYNARTETSESHTT
ALLLCPPSVSLSTVPTSADHSPKQDVDPLSQTFSDVESFLSRLPPLPPDK
QSKQAQSSKRLHQRRSLPLLSKQESDMHCEQVRAAQLPPHLSASFLTDEQ
GSPPSSAGTASPVSRSVSRKHSQNRQDDTDSFVERDCSPEGSPLLRSVSG
QGASVDRRRRSEEFFNIGAPVLRRAGVGKVPEGEQENEVMNLFRNVLRQE
MDVIRTDLHNDIVSIHSELVLLASAQSRELKEVVKERDEKVMRLETEVRR
LKADNLRLRKKYGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf