Ggra9523.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9523.t1
Unique NameGgra9523.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1072
Homology
BLAST of Ggra9523.t1 vs. uniprot
Match: A0A2V3J6L3 (RRM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6L3_9FLOR)

HSP 1 Score: 1308 bits (3385), Expect = 0.000e+0
Identity = 762/1113 (68.46%), Postives = 859/1113 (77.18%), Query Frame = 0
Query:    1 MVNEHAERDAEWSHDRLRDPRPGKKPRLSVP--DEPPISPRSAPXXXXXXXXXXXXXXADPPVPRILLANLDYNTTEHDIDDFFRAAGVDVKRVSLVKVSPGNRVNGNAYVYVLDLRSVDVALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSSEKDVRELFRGCSIVDARSRPVKGGPPDMNTWFVDFADEDSFRRALDKDRSLPGLTICIATAQGRGTPRTREYRDNALPP---DGDRRGAPGRDDRFRXXXXXXXXXXXXXXXDRDDRPHRDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRN---ESPKRYDRRADGDRNGDVGNGFSSRARGHSRSRSPPARFERERRYDRHEYDRRDRRGAGYDDAYDRHRDRRYSPDYXXXXXXXXXXXXXXXXXXXXXGRYERDYHRXXXDYGRXXXXXX-------------------RGGSRYDREQADPRYDRERKMDPPLDPAVTTVLTNLPFCEDRERVVDTLARTLEDLNDALRIKEITPVGRRCGACIVVFRDEDSYSKALAMNSITISTRKVNILPLEVPSVARVQKLQPGFVPEDIIDDMRRNYGVESLYIKLKQSDQLLLGIEDSRFLVRLLDIDGRPLLHSRYATVSYIPSRNHANDMGGRSRRSPHDDFSGPGGRGGXXXX----DRDGRDDEEGPPDRRRFDGGDREXXXXXXXXXXXXGDREARGYNGRE-EWRVQFVGPHDRIEERLVKNALSHIGLKELNVIPIDDCTVEVHGGNSHDKTMREVLDLPNARLPSAISLRGLTARPS----SSSL-------KKRPLSLPQPRSGHDDDGTCAKKVKRSEDTPSSGKVPTSLQAALTDRFYVSPMTPPPGETSIVKGKKGTPDPELPQICERLESLRSAITGRGSKDGDGQNYADFCGNLKSLCEPQVLKYTTRENTDPLPPVVWTGTLSKGSKAACNGYLVLRSTQGEEYVKKAVAAIPTDVKVEFRGRFDDETFDHLLTSEAVVVVVKAQEEENSGMDSTPTDKRAPRSREYFKGILQSLRNKQRLGIGRYVWEGQKYLSLCIPPNPYVFKKLRLPWRYQDFTGHDSLLLVVGPKSASQK 1070
            MVNEHAERD EWSHDR+RDPRPGKKPRL+    D+P ++P   P               DP +PRILLANLDYNTTEHDI+DFFR AGVDV+ VSLVKVSPGNRVNGNAYVYV+D RSV +ALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSSEKDVRELFRGC+I+DARSRPVKGGPPDMNTWFVDF DEDSFRRALDKDRSLPGLTICIATAQGRGTPR R++RDN  PP   D DRR  P RDDR R   XXXXXXXXXXXX   DRP RDD  XXXXX XXX               XXXXXXXXXXXXXXX       ESP+R+DRRA+GDRNGDVGNG+S R R HSRS SPP+R++R+RR DR++Y+RRDRRG  YD+ YDRHRDRRYSP+Y                       Y+RDY R   D  RXXXXXX                   RGG RYDRE  D     +RK D PLDP+VTTVLTNLPFCEDRERVVDTLA TLE LNDAL+IK+I PVGRRCGAC+V+FRDE+SYS+ALAMNSITIS RKVNILPLEVPSVARVQKLQPGF PEDIIDDMRR+YGVE+LYIKL+QSDQLLLGI+DSRFLVRLLDIDGRPL+HSRYATVSYIPSRNHAND+  RSRRSP +DF+GPGGRG XXXX    DRDGR DEEG PDRRR DGGDR              DR+AR Y+ ++ EW+VQF GP + ++E L+K+AL+++G+  L V  +DD TVEVHGGN+ + T  +VLD+PN RLPS +S +GL ARP+    S SL       KKRP +     S    + +  KK+K ++D    GKVPTSLQ ALTDRF+VSPMTP PG+ ++ KGK+  P+PELPQICERLE+LRSAITGRGSKD DG NY++FCGNL+SLCEPQVLKYTT ENTDPLPP+VW GTLSKG+KA C G+LVLRS+Q +E  K  V AIP+DVKVE RG+F+D  FDHLLT EAVVVVVKA+EE   G D++  D R P +REYFKGILQSLRNKQRLGIGRY+WEG+KYLSLCIPPNP VFKKLRLPWRYQDF GHDSLLLVVGPK+A QK
Sbjct:    1 MVNEHAERDPEWSHDRMRDPRPGKKPRLTDDRRDDPSLTPTRPP---------------DPSIPRILLANLDYNTTEHDIEDFFRDAGVDVREVSLVKVSPGNRVNGNAYVYVIDHRSVHIALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSSEKDVRELFRGCNIIDARSRPVKGGPPDMNTWFVDFGDEDSFRRALDKDRSLPGLTICIATAQGRGTPRNRDFRDNGPPPPPNDMDRR-LPLRDDRPRDDRXXXXXXXXXXXXX--DRPPRDDXXXXXXXHXXXRLPDGRESLDRHPDRXXXXXXXXXXXXXXXXXXXXXXESPRRHDRRAEGDRNGDVGNGYS-RGRAHSRSMSPPSRYDRDRRNDRYDYERRDRRG--YDEPYDRHRDRRYSPEYYRDR------------------EYDRDYERRDRDRYRXXXXXXXXXXXXXXXXXXXXXXRDPRGG-RYDREPVDXXXXXDRKGDRPLDPSVTTVLTNLPFCEDRERVVDTLAGTLEQLNDALKIKDIIPVGRRCGACVVIFRDEESYSRALAMNSITISGRKVNILPLEVPSVARVQKLQPGFAPEDIIDDMRRSYGVETLYIKLRQSDQLLLGIDDSRFLVRLLDIDGRPLMHSRYATVSYIPSRNHANDVA-RSRRSPPNDFNGPGGRGXXXXXXXXRDRDGR-DEEGAPDRRRSDGGDRRDNGSDHARRDT--DRDARNYSSKQPEWKVQFFGPQNHVKEGLIKDALAYVGVHGLAVRSLDDYTVEVHGGNTGEGTFHKVLDIPNVRLPSPLSFKGLIARPARPPRSHSLHPDPKPQKKRPFT-----SDTGAEESSPKKMKHADDN-RHGKVPTSLQTALTDRFHVSPMTPSPGDATLSKGKRSPPNPELPQICERLETLRSAITGRGSKDSDGLNYSEFCGNLRSLCEPQVLKYTTMENTDPLPPIVWNGTLSKGNKAKCRGFLVLRSSQKDEQFKPVVEAIPSDVKVELRGKFEDGAFDHLLTPEAVVVVVKAEEEGARGTDASVADGRTPNNREYFKGILQSLRNKQRLGIGRYMWEGKKYLSLCIPPNPCVFKKLRLPWRYQDFAGHDSLLLVVGPKAAPQK 1063          
BLAST of Ggra9523.t1 vs. uniprot
Match: R7QLC4 (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLC4_CHOCR)

HSP 1 Score: 697 bits (1800), Expect = 3.220e-231
Identity = 527/1108 (47.56%), Postives = 656/1108 (59.21%), Query Frame = 0
Query:   21 RPGKKPRLSVPDEPPISPRSAPXXXXXXXXXXXXXXADPPVPRILLANLDYNTTEHDIDDFFRAAGVDVKRVSLVKVSPGNRVNGNAYVYVLDLRSVDVALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSSEKDVRELFRGCSIVDARSRPVKGGPPDMNTWFVDFADEDSFRRALDKDRSLPGLTICIATAQGRGTPRTREYRDNALPPDGDRRGAPG-RDDRFRXXXXXXXXXXXXXXXDRDDRPHRDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRNESPKRYDRRADGDRNGDVGNGFSSRARGHSRSRSPPARFERER---RYDR------HEYDRRDRRGAGYDDAYD---RHRDRRYSP-----------------DYXXXXXXXXXXXXXXXXXXXXXGRYERDYHRXXXDYGRXXXXXXRGGSRYDR---EQADPRYDRERKMDPPLDPAVTTVLTNLPFCEDRERVVDTLARTLEDLNDALRIKEITPVGRRCGACIVVFRDEDSYSKALAMNSITISTRKVNILPLEVPSVARVQKLQPGFVPEDIIDDMRRNYGVESLYIKLKQSDQLLLGIEDSRFLVRLLDIDGRPLLHSRYATVSYIPSRNHANDMGGRSRRSPHDDFSGPGGRGGXXXXDRDGRDDEEGPPDRRRFDGGD--------REXXXXXXXXXXXXGDREARGYNGREEWRVQFVGPHDRIEERLVKNALSHIGLKELNVIPIDDCTVEVHGGNSHDKTMREVLDLPNARLPSAISLRGLTARPSSSSLKKRPLSLPQPRSGHDDDG------TCAKKVKRSEDTP-----SSGKVPTSLQAALTDRFYVSPMTPPPGETSI-VKGKKGTPDPELPQICERLESLRSAITGRGSKDGDGQNYADFCGNLKSLCEPQVLKYTTRENTDPLPPVVWTGTLSKGSKAACNGYLVLRSTQGEEYVKKAVAAIPTDVKVEFRGRFDDETFDHLLTSEAVVVVVKAQEEENSGMDSTPTDKRA-------PRSREYFKGILQSLRNKQRLGIGRYVWEGQ--KYLSLCIPPNPYVFKKLRLPWRYQDFTGHDSLLLVVGPKS 1066
            RPGKKPRLS+ + P                        P   R+LLANL YNTTE  + D FR AG +V +V LVKV P NRVNGNA+V+++D RSVD+AL LDG EF GR LRVS MPEDQRT CVRG+   S+  DV +LFRGCSIV  RSRPVKGGPPD+NTWFVDF DE+SF RAL KDR+ PGL ICIATAQGRG    RE               PG RDD  R   XXXXXXXX    DR     RDDR XXXXXXXXXXX                            R R   PK        +RNG +GNG     R  SRSRSP   ++R+R     DR       +YDR   R A YD  Y      RDRR SP                 D XXXXXXXXXXXXXXXXXXXXX         XXX    XXXX    G RYDR   E +     R+R+ D  LDPAVT VLTNLPFCE+R++V+DTL RTLEDL DAL+I++I PVGRRCGAC+VVFR+  S ++A+ + SI+I+ RKVNILPLEVPS+ARVQKL  GF  EDI+DD++R+YGV +L+++ KQSDQLLLG+EDSRFLVRLLDIDGR L++SRYATVSYIPSR+H++ MGGR R S  D +  P GRGG    DR+ RDD  G P   R  GGD          XXXXXXXXXXXX             W V+        ++R + NA  + G+  L+    D  +  +  G++    M +V+ L N +        G   + SSS          +  + ++ DG      +  KK+K S +         G +P            +SPMTP PG+ ++ +K K+   DP LP   +RLE +RS I  R  +D   +NY  FC +L +L EPQ L +T     DP+PP VW+G++ KG  + C+G+LVL S Q EE V+K ++ +P D+K+E RG+++DE F HLL  E+VVV++KA +E+         DKRA       PRS++   GIL+SLR KQ++GI RY   GQ  KY++LCIPPNPY+F+KLR+PWR +D+ GHDSLLL+VGPK+
Sbjct:   76 RPGKKPRLSL-ERPGAQGSPGAFTPSGSGRGGGSPTPLPSSSRLLLANLSYNTTEEQLVDLFRDAGAEVDKVRLVKVPPDNRVNGNAFVWLMDSRSVDIALGLDGREFLGRTLRVSDMPEDQRTACVRGLRPRSTSDDVHDLFRGCSIVGVRSRPVKGGPPDVNTWFVDFGDEESFTRALAKDRTAPGLMICIATAQGRGPRLPRER-------------IPGPRDDYDRGGPXXXXXXXXRGEYDR-----RDDRXXXXXXXXXXXXGPYDRAPPVLDVDP--------------RERMPPPK--------ERNG-MGNGGPP-PRSKSRSRSPRGGYDRDRGGSSRDRIRDPMDRDYDR--SRRADYDRGYPPRGHERDRRISPPRDDRYRERXXXXGRDRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSRGGRYDRDIREASRHAEQRDRRGDQGLDPAVTAVLTNLPFCENRQQVIDTLGRTLEDLPDALKIQDIIPVGRRCGACVVVFRESGSQNRAVQLQSISINGRKVNILPLEVPSIARVQKLSHGFSVEDILDDIQRHYGVRTLFVRTKQSDQLLLGVEDSRFLVRLLDIDGRRLVNSRYATVSYIPSRHHSDGMGGRGRPS-RDAYDDPNGRGGGYR-DRESRDDR-GSPGNERKRGGDPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPDEAGWEVRLAELPPAADDRELLNAFENAGVTGLSFDRHDPRSGLLRCGSARLSDMDKVIGLVNRK-------EGFLFKNSSSKATVISRGGKRSHAEYESDGIEKLGHSPPKKLKTSSEVEWKAQEEMGSLPPG------QGIQISPMTPSPGDYTLPLKTKREPLDPSLPDTVKRLEKVRSNILERPPEDDSSENYESFCRSLHALREPQKLIHTMSNTIDPIPPQVWSGSVRKGPTSRCDGFLVLNSNQSEEAVRKTISELPKDIKIEHRGKWEDEAFAHLLKPESVVVILKAAKEDGK------VDKRAEKSGSAIPRSKDVLNGILRSLRGKQKMGISRYTLPGQSKKYVALCIPPNPYMFEKLRVPWRARDYAGHDSLLLIVGPKN 1116          
The following BLAST results are available for this feature:
BLAST of Ggra9523.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6L30.000e+068.46RRM domain-containing protein n=1 Tax=Gracilariops... [more]
R7QLC43.220e-23147.56RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 144..215
e-value: 0.3
score: 11.2
coord: 468..542
e-value: 3.8
score: 1.4
coord: 63..136
e-value: 1.9E-6
score: 37.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 65..134
e-value: 2.3E-7
score: 30.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 62..140
score: 11.588178
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 137..217
e-value: 1.6E-7
score: 33.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 39..136
e-value: 3.6E-10
score: 42.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 432..460
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 795..810
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 624..693
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 650..693
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 770..785
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 770..819
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..334
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 38..136
NoneNo IPR availableCDDcd00590RRM_SFcoord: 145..202
e-value: 2.83183E-5
score: 41.1365
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 59..202
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 468..645

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:436199..439414 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9523.t1Ggra9523.t1Gracilaria gracilis GNS1m malemRNAtig00000873_pilon 436199..439414 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9523.t1 ID=Ggra9523.t1|Name=Ggra9523.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1072bp
MVNEHAERDAEWSHDRLRDPRPGKKPRLSVPDEPPISPRSAPPPPPAGGS
GGGGGGADPPVPRILLANLDYNTTEHDIDDFFRAAGVDVKRVSLVKVSPG
NRVNGNAYVYVLDLRSVDVALDLDGAEFRGRKLRVSTMPEDQRTVCVRGM
PRPSSEKDVRELFRGCSIVDARSRPVKGGPPDMNTWFVDFADEDSFRRAL
DKDRSLPGLTICIATAQGRGTPRTREYRDNALPPDGDRRGAPGRDDRFRD
DRYRDEPPRDDRARDRDDRPHRDDRAPRDDRLRDERGLEGRDSADRHPER
SRDEVDRHGRDEYDRRTRNESPKRYDRRADGDRNGDVGNGFSSRARGHSR
SRSPPARFERERRYDRHEYDRRDRRGAGYDDAYDRHRDRRYSPDYYRDRE
YERDYDRRDRYRRDYDGRYERDYHRRDRDYGRDYRRESRGGSRYDREQAD
PRYDRERKMDPPLDPAVTTVLTNLPFCEDRERVVDTLARTLEDLNDALRI
KEITPVGRRCGACIVVFRDEDSYSKALAMNSITISTRKVNILPLEVPSVA
RVQKLQPGFVPEDIIDDMRRNYGVESLYIKLKQSDQLLLGIEDSRFLVRL
LDIDGRPLLHSRYATVSYIPSRNHANDMGGRSRRSPHDDFSGPGGRGGGG
GRDRDGRDDEEGPPDRRRFDGGDRERRESGNDHQRRDGDREARGYNGREE
WRVQFVGPHDRIEERLVKNALSHIGLKELNVIPIDDCTVEVHGGNSHDKT
MREVLDLPNARLPSAISLRGLTARPSSSSLKKRPLSLPQPRSGHDDDGTC
AKKVKRSEDTPSSGKVPTSLQAALTDRFYVSPMTPPPGETSIVKGKKGTP
DPELPQICERLESLRSAITGRGSKDGDGQNYADFCGNLKSLCEPQVLKYT
TRENTDPLPPVVWTGTLSKGSKAACNGYLVLRSTQGEEYVKKAVAAIPTD
VKVEFRGRFDDETFDHLLTSEAVVVVVKAQEEENSGMDSTPTDKRAPRSR
EYFKGILQSLRNKQRLGIGRYVWEGQKYLSLCIPPNPYVFKKLRLPWRYQ
DFTGHDSLLLVVGPKSASQKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf