Ggra9504.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9504.t1
Unique NameGgra9504.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Homology
BLAST of Ggra9504.t1 vs. uniprot
Match: A0A2V3J5T0 (Zinc finger protein CONSTANS-LIKE 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5T0_9FLOR)

HSP 1 Score: 132 bits (331), Expect = 9.800e-33
Identity = 118/341 (34.60%), Postives = 146/341 (42.82%), Query Frame = 0
Query:    1 MSTLSICAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPLSAAAAPPLHAAALSSSCDTLLDVSDSCTPPRLHQHTHPLLRLFSPCTTTTAXXXXXXXXXXXXXXXXPXXXXXXHPYSYAPPESPPLHVPAWGLDALVPLFPAAAXXXXXXXXXLLXXXXXXXXXXXXXXPLSDIADAFVKKEAETLLQSSGYALDALVPQMH---RTHLPPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRLAALQRFRNKRANRSFRKRVRYACRKQLADSRPRVKGRFVGRHAI 338
            MST ++CA+C + DA +YC AD+A+LC  CD +IHSANKL+RRH R+P+   +  P+     + S DTLLD S+S T P     T  L+ +  P  ++ A                                          LD++VP                                L+ +A A+VKKEAETLLQSSG +LDA+VPQ+      H  P Q                                                                      R RLAAL+RFRNKRANRSFRKRVRYACRKQLADSRPRVKGRFVGR AI
Sbjct:    1 MST-TLCASCRTIDASVYCQADSAYLCTICDHSIHSANKLSRRHSRIPIHNNSFSPI-----APSTDTLLDHSESSTLPSAE--TDNLISILPPGVSSNAFSVDDL------------------------------------LDSIVP--------------------------QPNDDHLTSMAGAYVKKEAETLLQSSGLSLDAMVPQLDVWSGLHQVPQQPGRRSRPPTSSFDFSAVVPNMPALQPQPTSSAEPVVPTQSEASSTDDSESIMLKRK--------------RHRLAALERFRNKRANRSFRKRVRYACRKQLADSRPRVKGRFVGRKAI 257          
BLAST of Ggra9504.t1 vs. uniprot
Match: A0A2V3IC69 (Zinc finger protein CONSTANS-LIKE 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC69_9FLOR)

HSP 1 Score: 85.1 bits (209), Expect = 9.390e-16
Identity = 70/211 (33.18%), Postives = 97/211 (45.97%), Query Frame = 0
Query:    1 MSTLSICAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPLSAAAAPPLHAAALSSSCDTLLDVSDSCTPPRLHQHTHPLLRLFSPCTTTTAXXXXXXXXXXXXXXXXPXXXXXXHPYSYAPPESPPLHVPAWGLDALVPLFPAAAXXXXXXXXXLLXXXXXXXXXXXXXXPLSDIADAFVKKEAETLLQSSGYALDALVPQM 211
            MST ++CA+C + DA +YC AD+A+LC  CD +IHSANKL+RRH R+P+   +  P+     + S DTLLD S+S T P     T  L+ +  P  ++ A                                          LD++VP                                L+ +A A+VKKEAETLLQSSG +LDA+VPQ+
Sbjct:    1 MST-TLCASCRTIDASVYCQADSAYLCTICDHSIHSANKLSRRHSRIPIHNNSFSPI-----APSTDTLLDHSESSTLPSAE--TDNLISILPPGVSSNAFSVDDL------------------------------------LDSIVP--------------------------QPNDDHLTSMAGAYVKKEAETLLQSSGLSLDAMVPQL 141          
BLAST of Ggra9504.t1 vs. uniprot
Match: R7QSJ2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSJ2_CHOCR)

HSP 1 Score: 80.1 bits (196), Expect = 3.130e-13
Identity = 105/364 (28.85%), Postives = 123/364 (33.79%), Query Frame = 0
Query:    7 CAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPLS---------AAAAPPLH-----AAALSSSCDTLLDVSDSCTPPRLHQHTHPLLRLFSPCTTTTAXXXXXXXXXXXXXXXXPXXXXXXHPYSYAPPESPPLHVPAWGLDALVPLFPAAAXXXXXXXXXLLXXXXXXXXXXXXXXPLSDIADAFVKKEAETLLQSS----------GYALDALVPQMHRTHLPPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-----------DRLAALQRFRNKRANRSFRKRVRYACRKQLADSRPRVKGRFVGR 335
            CAAC +A A +YC +D A LC  CD  +H AN+LARRH RVPL+            +PP H     +   SSS  T  D SD  +   +   T  L         T                          P  +  P S       W  +A     P A                           L  IA AFVK+E +TL +SS             LD L     R  LPP                                                                                    DR AAL+RFR+KRANRSFRK+VRYACRKQLADSRPRVKGRFVGR
Sbjct:    6 CAACRAAPASIYCPSDTAILCTACDILVHEANQLARRHTRVPLNLFDNMGVPQVEHSPPTHFHGAQSTDKSSSAATAFDESDESSGGGVVPDTDDLYPEHHTFADTQVADISLSP-----------------PTKHQQPSS-------WAHEAQSAPHPVADTNTEC---------------------LKTIAGAFVKQEIQTLFESSQRQSPPKATHANGLDFL---WMRDSLPPALLCDGTSTTLTGTRHGFDSKQVLSAAQIALQNSLDQSLLDDVLGSSLSTDEDISIPGADILDGLKIEGAALTSAERSREQKRLDRQAALRRFRHKRANRSFRKKVRYACRKQLADSRPRVKGRFVGR 321          
BLAST of Ggra9504.t1 vs. uniprot
Match: A0A2V3IE76 (Zinc finger protein CONSTANS-LIKE 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE76_9FLOR)

HSP 1 Score: 66.2 bits (160), Expect = 8.840e-9
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0
Query:  296 ALQRFRNKRANRSFRKRVRYACRKQLADSRPRVKGRFV 333
            AL+RFR+KRANRSF KRVRY CRKQLADSRPRVKGRFV
Sbjct:  203 ALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFV 240          
BLAST of Ggra9504.t1 vs. uniprot
Match: I1I2B4 (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1I2B4_BRADI)

HSP 1 Score: 65.9 bits (159), Expect = 1.150e-8
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    7 CAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPLSAAAA 54
            CA C  A AVLYC ADAA LC PCD+AIH+AN LA RH RVPLS+AAA
Sbjct:   18 CAVCGVAAAVLYCAADAAALCTPCDAAIHAANPLASRHHRVPLSSAAA 65          
BLAST of Ggra9504.t1 vs. uniprot
Match: R7QFM0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFM0_CHOCR)

HSP 1 Score: 62.4 bits (150), Expect = 3.080e-7
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0
Query:  297 LQRFRNKRANRSFRKRVRYACRKQLADSRPRVKGRFV 333
            L RFR+KRANRSF K+VRY CRKQLADSRPRVKGRFV
Sbjct:  281 LARFRSKRANRSFTKKVRYECRKQLADSRPRVKGRFV 317          
BLAST of Ggra9504.t1 vs. uniprot
Match: A0A835BFX4 (B box-type domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835BFX4_9POAL)

HSP 1 Score: 57.4 bits (137), Expect = 5.440e-7
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 0
Query:    7 CAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPLSAAAAPPLHAAALSSSCDTLLDVSDSCTPPRLHQHTHPLL 89
            C AC +A+A + C AD A LCA CD  +H+ANKLA +HQRVPL + A      AA +++    +   D C    LH H  P L
Sbjct:    5 CNACGAAEARVLCCADEAALCAACDEEVHAANKLAGKHQRVPLLSDAD-----AAATAAATPAVPKCDICQSKTLHYHLVPFL 82          
BLAST of Ggra9504.t1 vs. uniprot
Match: R0FXZ6 (Uncharacterized protein n=1 Tax=Capsella rubella TaxID=81985 RepID=R0FXZ6_9BRAS)

HSP 1 Score: 60.8 bits (146), Expect = 7.290e-7
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 MSTLSICAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPL 49
            M++  +C +C S  A L+C ADAAFLC PCDS IH+ANKLA RH+RV L
Sbjct:    1 MASSRLCDSCKSTAATLFCRADAAFLCGPCDSKIHTANKLASRHERVYL 49          
BLAST of Ggra9504.t1 vs. uniprot
Match: A0A804KMS7 ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804KMS7_MUSAM)

HSP 1 Score: 59.7 bits (143), Expect = 1.710e-6
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0
Query:    7 CAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPL 49
            C +C SA + +YC ADAA LCA CD++IHSAN LARRHQRVP+
Sbjct:    9 CESCRSAPSTVYCRADAAALCATCDASIHSANLLARRHQRVPV 51          
BLAST of Ggra9504.t1 vs. uniprot
Match: V4NJM4 (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4NJM4_EUTSA)

HSP 1 Score: 59.7 bits (143), Expect = 1.900e-6
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0
Query:    1 MSTLSICAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRV 47
            MS+  +C +C SA A L+C ADAAFLC  CD  IHSANKLA RH+RV
Sbjct:    1 MSSSRLCDSCKSAAATLFCRADAAFLCGECDGKIHSANKLASRHERV 47          
The following BLAST results are available for this feature:
BLAST of Ggra9504.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5T09.800e-3334.60Zinc finger protein CONSTANS-LIKE 1 n=1 Tax=Gracil... [more]
A0A2V3IC699.390e-1633.18Zinc finger protein CONSTANS-LIKE 2 n=1 Tax=Gracil... [more]
R7QSJ23.130e-1328.85Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IE768.840e-989.47Zinc finger protein CONSTANS-LIKE 3 n=1 Tax=Gracil... [more]
I1I2B41.150e-872.92Uncharacterized protein n=1 Tax=Brachypodium dista... [more]
R7QFM03.080e-786.49Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A835BFX45.440e-743.37B box-type domain-containing protein n=1 Tax=Digit... [more]
R0FXZ67.290e-761.22Uncharacterized protein n=1 Tax=Capsella rubella T... [more]
A0A804KMS71.710e-667.44(wild Malaysian banana) hypothetical protein n=1 T... [more]
V4NJM41.900e-663.83Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 2..49
e-value: 5.3E-13
score: 59.2
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 5..49
e-value: 6.7E-7
score: 29.4
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 2..49
score: 11.23438
IPR010402CCT domainPFAMPF06203CCTcoord: 293..333
e-value: 7.4E-17
score: 61.2
IPR010402CCT domainPROSITEPS51017CCTcoord: 293..335
score: 15.020951
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..131
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..341
NoneNo IPR availableCDDcd19821Bbox1_BBX-likecoord: 6..49
e-value: 1.55523E-14
score: 65.0115
IPR045281Zinc finger protein CONSTANS-likePANTHERPTHR31319ZINC FINGER PROTEIN CONSTANS-LIKE 4coord: 5..335

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:333046..334071 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9504.t1Ggra9504.t1Gracilaria gracilis GNS1m malemRNAtig00000873_pilon 333046..334071 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9504.t1 ID=Ggra9504.t1|Name=Ggra9504.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MSTLSICAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPLS
AAAAPPLHAAALSSSCDTLLDVSDSCTPPRLHQHTHPLLRLFSPCTTTTA
TTTATTTASTAPCDAPPSPPSPPHPYSYAPPESPPLHVPAWGLDALVPLF
PAAAAHSPPPPPPLLPPPLPPLLPSPPPPPLSDIADAFVKKEAETLLQSS
GYALDALVPQMHRTHLPPPQPPQPQLRRRSRPLPPRSTISTQSYAAVSVG
VGGGDGDDAAVVPLSLTALSAESSGGAAVGAGAGATSARARDRLAALQRF
RNKRANRSFRKRVRYACRKQLADSRPRVKGRFVGRHAIVKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000315Znf_B-box
IPR010402CCT_domain
IPR045281CONSTANS-like