Ggra9487.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9487.t1
Unique NameGgra9487.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length719
Homology
[Close]
BLAST of Ggra9487.t1 vs. uniprot
Match: A0A2V3JAS0 (Anaphase-promoting complex subunit 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JAS0_9FLOR)

HSP 1 Score: 343 bits (880), Expect = 2.160e-105
Identity = 274/634 (43.22%), Postives = 337/634 (53.15%), Query Frame = 0 
Query:   21 MEPAAAARFLSANNLLLALAASTPAIARTHAPFYPRLHQLIASAPPPHASLQRALSQLLVEPDAAAAAPYVRDGALPPASSPLPLARLLWLLLRRALSSPHALAQLVSLLELHTHAHAQLRVAYYQRHSRVALFLRKAVVAFHSLSFESLMRLHDALRLQSEPPPPPHQLSTHARRLAASHPLPPPLFSQLQQHASRXXXXAAATAVEARSPLTMLTQLESARRADLSTALAATHRHFDTHAAQLPPHHAALALGILHARFSAGAHATAALRDALRAAQAAADVGAQRAALQWLARVEPPCHAASLLRHARDAPALARLALLCDAPPRPRALASSLRASVDALLLAAAAWQLRAALPTALGVARSAVRRA-QLQHAPPAELARAAVALAELTAADGHAPRAERLLLRCMARVQAAAXXXXASTVAPELLSLRRALTAVRFERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWLXXXXXXXXXXXXXXXXXXXXXXXGRAWRVADALRVRADALLAGGDGAGALAHALHAASLAHALRLCAPRVRALLSAVRALLRLNARAAXXXXXXXXXXXXXXEGLGAAVRAQALLLYAHCVAKRAAERRQRPPEQAMALAQRAL 653
            MEP AAARFL+A  LLLALAAS+PA+A+   PF+P +H  + S PP H    R L  + V P+ +  A YV +   PP S  +PL+ LL  +++ A++SPHA   LV L E HT       +  YQ  S VALFLRK  VAFHSLSFESL  L   L     P P    L  HA+ LA S PLP P+F  L     +             S LTMLT LESARR+D   AL+ATHRHFD HA  + PHHAALALGILHARFS  AHA+ ALRDALRAAQAA D   Q+ A+QWLA VEP   A  LL HA D  AL R  LL  +PP P  LA++   SVDA LLAAAAW  RA+LPTAL VAR+A++RA +LQ+       RA +A+AE+TA D   P    +L R + R++        ST APEL  L R+LT +RFE                                              +                          R  RV   LR+RA+A L+  +  GAL+ AL AASLA A+ L A  VR+ L+ V  LLRL + A               EGLG+ VRA+A  L+A C+ K  AE    P +Q + L Q+AL
Sbjct:    1 MEPPAAARFLTAQKLLLALAASSPAVAKPLPPFFPVIHNFVTS-PPSHEHFFRQLDAITVHPNVSLLATYVPNPT-PPDS--IPLSHLLNAIVKHAVTSPHAFFSLVYLFEHHTDPDL---LGAYQLDSVVALFLRKVAVAFHSLSFESLTHLQSTLTSVYRPSP---NLRLHAKLLAQSQPLPDPVFKLLSDTHYKP------------SALTMLTHLESARRSDFPLALSATHRHFDMHAPNISPHHAALALGILHARFSHKAHASTALRDALRAAQAADDTHCQKVAMQWLASVEPLEQAHLLLHHATDHLALTRHQLLTSSPPSPSELATAGN-SVDARLLAAAAWLTRASLPTALCVARAALKRAHRLQND---SYVRAVIAVAEMTALDADLPSGLSMLRRHILRLK---HRHTNSTTAPELFMLERSLTMLRFEHTVRAMQLPEACILRDKIKAFAQCAKTNALAFSAQDAELDTMEADVKCFLLAEDSRAAADQALKLAKRAAVYSRPERVVTGLRLRAEAFLSAEEAGGALSDALAAASLAEAMHLDAAHVRSSLTVVETLLRLESPAKQVNATLTPILPRALEGLGSLVRARACQLHAECLMKACAETESVPDKQVVKLVQQAL 605
The following BLAST results are available for this feature:
BLAST of Ggra9487.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3JAS02.160e-10543.22Anaphase-promoting complex subunit 5 n=1 Tax=Graci... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026000Anaphase-promoting complex subunit 5 domainPFAMPF12862ANAPC5coord: 235..317
e-value: 2.2E-8
score: 34.0
NoneNo IPR availablePANTHERPTHR12830:SF9ANAPHASE-PROMOTING COMPLEX SUBUNIT 5coord: 116..696
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 43..47
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..718
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 35..42
IPR037679Anaphase-promoting complex subunit 5PANTHERPTHR12830ANAPHASE-PROMOTING COMPLEX SUBUNIT 5coord: 116..696

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:163852..166008 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9487.t1Ggra9487.t1Gracilaria gracilis GNS1m malemRNAtig00000873_pilon 163852..166008 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9487.t1 ID=Ggra9487.t1|Name=Ggra9487.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=719bp
MNFIGRRRRSQRSSGGAIAIMEPAAAARFLSANNLLLALAASTPAIARTH
APFYPRLHQLIASAPPPHASLQRALSQLLVEPDAAAAAPYVRDGALPPAS
SPLPLARLLWLLLRRALSSPHALAQLVSLLELHTHAHAQLRVAYYQRHSR
VALFLRKAVVAFHSLSFESLMRLHDALRLQSEPPPPPHQLSTHARRLAAS
HPLPPPLFSQLQQHASRAAAAAAATAVEARSPLTMLTQLESARRADLSTA
LAATHRHFDTHAAQLPPHHAALALGILHARFSAGAHATAALRDALRAAQA
AADVGAQRAALQWLARVEPPCHAASLLRHARDAPALARLALLCDAPPRPR
ALASSLRASVDALLLAAAAWQLRAALPTALGVARSAVRRAQLQHAPPAEL
ARAAVALAELTAADGHAPRAERLLLRCMARVQAAAAAAAASTVAPELLSL
RRALTAVRFERAVAAAQLVRADTLRRRLHAFAAAAQAHALALSAPDVALD
ALRADARWLLARGHARAAAAAALALARRAAALGRAWRVADALRVRADALL
AGGDGAGALAHALHAASLAHALRLCAPRVRALLSAVRALLRLNARAAHAL
RLLRPLLPLALEGLGAAVRAQALLLYAHCVAKRAAERRQRPPEQAMALAQ
RALHAFRQLRHANGVRDCLYTLARLYHCTQQFALRNRMACLFRQHVRTIG
TPDAVQQTTNSLVDHDLV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026000Apc5_dom
IPR037679Apc5