Ggra947.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra947.t1
Unique NameGgra947.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Homology
BLAST of Ggra947.t1 vs. uniprot
Match: A0A2V3IY64 (Sm protein F n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY64_9FLOR)

HSP 1 Score: 151 bits (382), Expect = 7.440e-46
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0
Query:    1 MASKSSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIRPGLAASQ 83
            M SK +H+NP PFL SL GKPVIVKLKWG+EYRG+LKSVD YMN+QLENSEEWVDGAMDG LGEILIRCNNVLYIRPGLAAS+
Sbjct:    1 MTSKQTHVNPTPFLHSLIGKPVIVKLKWGMEYRGFLKSVDKYMNIQLENSEEWVDGAMDGHLGEILIRCNNVLYIRPGLAASE 83          
BLAST of Ggra947.t1 vs. uniprot
Match: R7QKP6 (Sm protein F n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKP6_CHOCR)

HSP 1 Score: 147 bits (372), Expect = 2.340e-44
Identity = 71/82 (86.59%), Postives = 77/82 (93.90%), Query Frame = 0
Query:    1 MASKSSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIRPGLAAS 82
            M+SKSS I+PKPFL SLTGKPVIVKLKWGLEYRG+L SVDNYMNLQLENSEEW+DGAM  +LGEILIRCNNVLYIRPGLAA+
Sbjct:    1 MSSKSSVIHPKPFLASLTGKPVIVKLKWGLEYRGHLTSVDNYMNLQLENSEEWIDGAMADKLGEILIRCNNVLYIRPGLAAT 82          
BLAST of Ggra947.t1 vs. uniprot
Match: A0A5P1EWT9 (Sm protein F n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A5P1EWT9_ASPOF)

HSP 1 Score: 122 bits (306), Expect = 2.760e-34
Identity = 57/88 (64.77%), Postives = 73/88 (82.95%), Query Frame = 0
Query:    1 MASKSSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIRPGLAASQAVDDA 88
            +A ++  +NPKPFL +LTGKPVIVKLKWG+EY+GYL SVD+YMNLQL N+EE++DG   G LGEILIRCNNVLY+R G+   + ++DA
Sbjct:    7 VAGEAIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLR-GVPEDEEIEDA 93          
BLAST of Ggra947.t1 vs. uniprot
Match: A0A811PTF8 (Sm protein F n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811PTF8_9POAL)

HSP 1 Score: 123 bits (308), Expect = 3.750e-34
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 0
Query:    2 ASKSSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIRPGLAASQAVDDA 88
            A K+  +NPKPFL +LTGKPVIVKLKWG+EY+GYL SVD+YMNLQL N+EE++DG   G LGEILIRCNNVLY+R G+     ++DA
Sbjct:   42 AGKTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLR-GVPEDAEIEDA 127          
BLAST of Ggra947.t1 vs. uniprot
Match: small nuclear ribonucleoprotein F-like n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193AA6C8 (small nuclear ribonucleoprotein F-like n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193AA6C8)

HSP 1 Score: 121 bits (304), Expect = 4.530e-34
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 0
Query:    8 INPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIR 76
            +NPKPF+ SLTGKPVIVKLKWG+EY+GYL SVD YMN+QL N+EE+VDGA+ G LGEILIRCNNVLYIR
Sbjct:    6 MNPKPFINSLTGKPVIVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALSGHLGEILIRCNNVLYIR 74          
BLAST of Ggra947.t1 vs. uniprot
Match: small nuclear ribonucleoprotein F n=2 Tax=Archelosauria TaxID=1329799 RepID=UPI000521808D (small nuclear ribonucleoprotein F n=2 Tax=Archelosauria TaxID=1329799 RepID=UPI000521808D)

HSP 1 Score: 122 bits (305), Expect = 6.100e-34
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 0
Query:    3 SKSSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIR 76
            +KS  +NPKPFL  LTGKPV+VKLKWG+EY+GYL SVD YMN+QL N+EE++DGA+ G LGE+LIRCNNVLYIR
Sbjct:   23 TKSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIR 96          
BLAST of Ggra947.t1 vs. uniprot
Match: A0A804J679 (Sm protein F n=9 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 121 bits (303), Expect = 6.250e-34
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 0
Query:    8 INPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIRPGLAASQAVDDA 88
            +NPKPFL +LTGKPVIVKLKWG+EY+GYL SVD+YMNLQL N+EE+VDG   G LGEILIRCNNVLY+R G+   + ++DA
Sbjct:    6 VNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLR-GVPEDEEIEDA 85          
BLAST of Ggra947.t1 vs. uniprot
Match: A7RX20 (Sm protein F n=2 Tax=Actiniaria TaxID=6103 RepID=A7RX20_NEMVE)

HSP 1 Score: 121 bits (303), Expect = 6.630e-34
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 0
Query:    8 INPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIR 76
            +NPKPFL SLTGKPVI+KLKWG+EY+GYL SVD YMNLQL N+EE++DGA+ G LGE+LIRCNNVLY+R
Sbjct:    7 LNPKPFLNSLTGKPVIIKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGALTGNLGEVLIRCNNVLYVR 75          
BLAST of Ggra947.t1 vs. uniprot
Match: G1KPF7 (Sm protein F n=16 Tax=Euteleostomi TaxID=117571 RepID=G1KPF7_ANOCA)

HSP 1 Score: 120 bits (302), Expect = 8.630e-34
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 0
Query:    5 SSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIR 76
            S  +NPKPFL  LTGKPV+VKLKWG+EY+GYL SVD YMN+QL N+EE++DGAM G LGE+LIRCNNVLYIR
Sbjct:    1 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAMSGHLGEVLIRCNNVLYIR 72          
BLAST of Ggra947.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein F n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI000F4D4B38 (LOW QUALITY PROTEIN: small nuclear ribonucleoprotein F n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI000F4D4B38)

HSP 1 Score: 121 bits (304), Expect = 1.000e-33
Identity = 55/75 (73.33%), Postives = 66/75 (88.00%), Query Frame = 0
Query:    2 ASKSSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENSEEWVDGAMDGELGEILIRCNNVLYIR 76
            +S+S  +NPKPFL  LTGKPV+VKLKWG+EY+GYL SVD YMN+QL N+EE+VDGA+ G LGE+LIRCNNVLYIR
Sbjct:   27 SSQSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEVLIRCNNVLYIR 101          
The following BLAST results are available for this feature:
BLAST of Ggra947.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IY647.440e-4684.34Sm protein F n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
R7QKP62.340e-4486.59Sm protein F n=1 Tax=Chondrus crispus TaxID=2769 R... [more]
A0A5P1EWT92.760e-3464.77Sm protein F n=2 Tax=Mesangiospermae TaxID=1437183... [more]
A0A811PTF83.750e-3466.67Sm protein F n=1 Tax=Miscanthus lutarioriparius Ta... [more]
small nuclear ribonucleoprotein F-like n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193AA6C84.530e-3479.71small nuclear ribonucleoprotein F-like n=2 Tax=Sty... [more]
small nuclear ribonucleoprotein F n=2 Tax=Archelosauria TaxID=1329799 RepID=UPI000521808D6.100e-3472.97small nuclear ribonucleoprotein F n=2 Tax=Archelos... [more]
A0A804J6796.250e-3470.37Sm protein F n=9 Tax=Mesangiospermae TaxID=1437183... [more]
A7RX206.630e-3476.81Sm protein F n=2 Tax=Actiniaria TaxID=6103 RepID=A... [more]
G1KPF78.630e-3475.00Sm protein F n=16 Tax=Euteleostomi TaxID=117571 Re... [more]
LOW QUALITY PROTEIN: small nuclear ribonucleoprotein F n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI000F4D4B381.000e-3373.33LOW QUALITY PROTEIN: small nuclear ribonucleoprote... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 12..77
e-value: 3.6E-24
score: 96.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 13..77
e-value: 3.7E-21
score: 74.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..77
e-value: 2.3E-30
score: 106.1
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Fcoord: 5..78
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 5..78
IPR034100Small nuclear ribonucleoprotein FCDDcd01722Sm_Fcoord: 9..76
e-value: 1.24018E-46
score: 141.966
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 10..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:907169..907670 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra947.t1Ggra947.t1Gracilaria gracilis GNS1m malemRNAtig00000049_pilon 907169..907670 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra947.t1 ID=Ggra947.t1|Name=Ggra947.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MASKSSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENS
EEWVDGAMDGELGEILIRCNNVLYIRPGLAASQAVDDAATAATAAAAAKR
SAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR034100Sm_F
IPR010920LSM_dom_sf