Ggra9384.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9384.t1
Unique NameGgra9384.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length453
Homology
BLAST of Ggra9384.t1 vs. uniprot
Match: A0A2V3ITS3 (Splicing factor U2AF subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITS3_9FLOR)

HSP 1 Score: 604 bits (1557), Expect = 2.680e-213
Identity = 323/446 (72.42%), Postives = 363/446 (81.39%), Query Frame = 0
Query:   19 RPTLWDVREFPYGIPVP-PAGGSTAFAPHVGRSVAQAPRVEANRAPIPGPSDIVHAPVEGESGPLAGINIEALKALLNPSG------VQAVTPTATSPIPVVTSGDTSV----QSTRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYNATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRATHTNGTATHASGMLN-SMGMNGAGTVSKELLLPDISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPRDGERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDRRLF 452
            RPTLWDVREFPYGIPVP P   STA +    R  A + R E  RA +PGP+DIV AP  GE GPLAGINI AL+ALL P        +Q+ T    +P    T G  S     Q+TRHARRLYVGNLPA+TT+AQIEDFFNRAL+A+ G E+ GN V+SVYTNLEKRFAFIETRTIREAAAGLALDGVKF DMFLRLRRPNDYN +LAGD RPPD F+PSILGIVSTQVSDGPNKVFVGGIPY LTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVD  VVDAACEGLHGMQVGDKTLTVRRATHTNGTAT+ASGML  S  MNG  ++S  +LLP+ISRVVA+ DA+TEE+LEDDDEY +I  D++DEA +LG LEEVLIARPRDG RL++AVGKVF+KF  +DDAERA + + GR+FG+ +VRAEY +E+RFD R F
Sbjct:   15 RPTLWDVREFPYGIPVPIPGAASTAVS---ARIPAPSSRAEPLRAAVPGPADIVRAPQPGEDGPLAGINIHALRALLTPGSTPPVPHIQSPTQVGITPTQSSTPGHASPEGAQQATRHARRLYVGNLPANTTEAQIEDFFNRALQAAHGTETPGNPVVSVYTNLEKRFAFIETRTIREAAAGLALDGVKFRDMFLRLRRPNDYNPSLAGDARPPDRFDPSILGIVSTQVSDGPNKVFVGGIPYTLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDPHVVDAACEGLHGMQVGDKTLTVRRATHTNGTATYASGMLGGSYSMNGGASLSANVLLPEISRVVALCDAITEEQLEDDDEYEDIAHDVKDEARRLGSLEEVLIARPRDGVRLKKAVGKVFLKFREKDDAERALMIMSGRKFGEHIVRAEYLDESRFDARQF 457          
BLAST of Ggra9384.t1 vs. uniprot
Match: R7QSG6 (Splicing factor U2AF subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSG6_CHOCR)

HSP 1 Score: 521 bits (1343), Expect = 4.380e-180
Identity = 287/464 (61.85%), Postives = 341/464 (73.49%), Query Frame = 0
Query:   19 RPTLWDVREFPYGIPVPPAGGSTAFAPHVGRSVAQAPRVEANRAP---IPGPSDIVHAPVEGESGPLAGINIEALKALLNPSGVQA------VTPTATSPIPVV--------TSGDTSV--------QSTRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYNATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRATHTNG--TATHAS---GMLNSMGMNGAGTVSKELLLPDISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPRDGERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDRRLF 452
            RPTLWDVRE PYGIP+PP G +++    V R  A  P   ++  P   +PGP DIVHAP EGE+GPLAGIN+EAL+ALLNP G+        + P+    I V         T GD S         Q +RHARRLYVGNLP DTTD+QI DFFNRAL+AS+GVESEG+ VISVY NLEKRFAFIETRTIREAAAGLALDGV+F DMFLRLRRPNDYNA LAG+PRPPDGFNP +LGIVSTQVSDGPNKVF+GGIPYNLTEDQIK+LL +YG LAAFNLIKEP+TGMSKGFAFFE+VD   VDAAC GLHGM VGDKTLTVRRA++++G   ATHAS   G+     ++ A  VS   LL   + VV + + VT EE+E+D+EY +I DDM +E GK G LE V+I RP DG  +   VG+VF+K+ ++++AERA  T+ GRRFG+  V A +F+E RF  R F
Sbjct:   42 RPTLWDVREPPYGIPMPPPGAASSVGQPVARPGAVPPLRSSDAGPRGYVPGPHDIVHAPKEGETGPLAGINVEALRALLNPHGIGMNGRVGHMAPSHGGQIAVHAGKDHVPHTGGDASALGGSQLPSQVSRHARRLYVGNLPPDTTDSQIGDFFNRALQASKGVESEGDPVISVYMNLEKRFAFIETRTIREAAAGLALDGVRFRDMFLRLRRPNDYNAALAGNPRPPDGFNPGVLGIVSTQVSDGPNKVFIGGIPYNLTEDQIKSLLQTYGPLAAFNLIKEPSTGMSKGFAFFEFVDPSAVDAACSGLHGMSVGDKTLTVRRASNSSGGHNATHASMGTGVAREAIVSQA-PVSANALLTSSTTVVELRNVVTREEVENDEEYEDIKDDMEEEGGKFGKLESVVIPRPSDGPAMEAGVGRVFLKYSSKEEAERAHATMSGRRFGENTVEAAFFDETRFADRAF 504          
BLAST of Ggra9384.t1 vs. uniprot
Match: A0A7S3A984 (Splicing factor U2AF subunit (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A984_9RHOD)

HSP 1 Score: 344 bits (882), Expect = 4.220e-112
Identity = 198/402 (49.25%), Postives = 259/402 (64.43%), Query Frame = 0
Query:   19 RPTLWDVREFPYGIPVPPAGGSTAFAPHVGRSVAQAPRVEANRAPIPGPSDIVHAPVEGESGPLAGINIEALKALLNPSGV----QAVTPTATSPIPVVTSGDTSVQSTRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYNATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRATHTNGTATHASGMLNSMGMNGAGTVSKELLLPDISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIAR--PRDGERLRRAVGKVFVKF 414
            R T WDV+E PYG+P+PPAG S A + H           + N  P P P+          +         A  A++ P+ V    QA    AT   P       + Q+TRHARRLYVGNLPAD+TDA + +FFN+++  + GVES GN V+SVY NL+KRFAFIE RT+ EAAA L +DGV F  M LR+RRPNDYN        PP  FNPS+LGIVSTQV DGPNKVF+GGIPY+LTEDQIK LL +YG L AFNLIK+ NTG+SKG+AFFEY D  ++D AC+GL+GMQ+ DKTLTVRRA    G++   +     MG+ G G +     +P  +RV+ + + +TEE+L++++EY +I +D+++E  K G LEEVLI R  P D    +  VGKV++K+
Sbjct:   18 RETYWDVKESPYGVPLPPAGMS-AMSGHA--------EGQGNAVPAPNPA----------AAXXXXXXAIAPNAVVPPASVAQQMQAGELAATMAQP-------TYQATRHARRLYVGNLPADSTDADVSEFFNKSMTVAGGVESPGNPVLSVYLNLDKRFAFIELRTMAEAAAALQMDGVLFRGMSLRMRRPNDYNPIAFPPVEPPASFNPSLLGIVSTQVPDGPNKVFIGGIPYHLTEDQIKELLQAYGPLGAFNLIKDANTGLSKGYAFFEYQDPSIIDVACQGLNGMQINDKTLTVRRANQQGGSSQKTA----QMGVGGVGQIQ----MP--TRVLELDNMLTEEDLQNEEEYDDICEDIKEECSKYGNLEEVLIPRKGPEDAPEAK-GVGKVYLKY 382          
BLAST of Ggra9384.t1 vs. uniprot
Match: A0A7S1T4K8 (Splicing factor U2AF subunit n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4K8_9RHOD)

HSP 1 Score: 328 bits (842), Expect = 6.050e-104
Identity = 205/461 (44.47%), Postives = 275/461 (59.65%), Query Frame = 0
Query:   21 TLWDVREFPYGIPVPPAGGSTAFAPHVGRSVAQAPRVEANRAPIPGPSDIVHAPVEGESGPLAGINIEALKALLNPSGVQAVTPTATS-----PIPVVTSGDTSVQSTRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYNATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRATHT---------NGTATHASGMLNSMG----------MNGAGTVSKELLLPDISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPRD--------GERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDR 449
            T+WDV++ PYG P+PP                    + A  A +      V A V   S  +AGI+  AL+ +LNP  V AV+   T+     PIP+V  GD   Q TR ARRLYVGNLP DTT+A+I DFF +++  ++GVESEGN ++SVY N+EKRFAFIE RT+ EA+A L +DG+ F    LR+RRPNDY    A   R P  FNP +LGIVSTQV DGPNKVF+GGIPY+LTEDQIK LL S+G LAAFNLIK+ NTG+SKGF FFEY D  V+D ACE L+ MQ+G   LTVRRA  +          G  +  S ++   G           N   T S    L   + ++ + + V+E+EL DDDE+++I +D+R+EA K G ++E++I RPR          ER+   +G +F+ + + + +  A   + GR+FG  VV A Y +  + DR
Sbjct:   78 TMWDVKDSPYGFPLPPXXXXXXXXXXXXXXXXX--XLSAAYAAVAS----VGAVVADVSQGVAGIDTTALQRMLNPP-VFAVSENGTATAGGIPIPIV--GDNQ-QLTRPARRLYVGNLPPDTTEAEISDFFFKSMLKAKGVESEGNPILSVYLNMEKRFAFIELRTVNEASAALQMDGLLFRTFSLRMRRPNDYRPETAPRARAPPTFNPGLLGIVSTQVPDGPNKVFIGGIPYHLTEDQIKELLQSFGPLAAFNLIKDSNTGLSKGFGFFEYADPSVIDIACEKLNEMQLGRNKLTVRRAATSAAXXXXXXXXGVGSSLSNLMPLGGPVLTSSIASAANAIATTSPATPLRPPTAILQLENMVSEDELRDDDEFADIQEDVREEAAKYGSIQELIIPRPRKPTDTSDATDERVP-GLGSIFIVYHDVNSSMSAFAAMSGRKFGPNVVVANYTSPDQLDR 527          
BLAST of Ggra9384.t1 vs. uniprot
Match: M2Y3K9 (Splicing factor U2AF subunit n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y3K9_GALSU)

HSP 1 Score: 312 bits (799), Expect = 1.370e-97
Identity = 176/356 (49.44%), Postives = 238/356 (66.85%), Query Frame = 0
Query:  110 IPVV-TSGDTSVQSTRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYNATLAGDPRPPD----------------GFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRATHTNGTATHASGMLNSMGMNGAGTVSKELLLPDISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARP-RDGERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARF 447
            IPV  T+   + Q+T+HARRLYVGNLP+D T++++ DFFN AL  ++GV+  G+ V SVY NL+KRFAFIE  +  EAAA + +DGV F  M LR+RRPNDYN  +     PP                 GF+PS LG+VSTQV DGP+KVF+GG+PY+LTEDQIK +LSSYG L AFNL+K+PNTG+SKG+AFF+Y D  +V+AA +GL+GM +GDKTLTVRRA+  +      SG +  +G + + TV         +R++ + + V  EEL DD+EY +I++D+R+E+ K G + EV I RP +  E     +GKVFV F    DAE+A   L GRRFG + V A Y++E R+
Sbjct:  191 IPVAPTTQPNTQQATKHARRLYVGNLPSDVTESEVADFFNSALYLAKGVDVPGDPVQSVYLNLDKRFAFIELNSAAEAAAAIQMDGVLFRGMSLRMRRPNDYNPNIHAPVYPPVCQLLTCFLGYIEKFQIGFDPSALGVVSTQVPDGPDKVFIGGLPYHLTEDQIKEILSSYGPLNAFNLVKDPNTGLSKGYAFFQYKDPSIVEAAIKGLNGMTMGDKTLTVRRASQVS------SGSVE-LGQSFSPTVRYP------TRILELRNMVEPEELVDDEEYEDIIEDVREESSKYGEVTEVKIPRPSKTDEANPPGLGKVFVSFKTVSDAEKAFAALTGRRFGGKSVIANYYDEERY 533          
BLAST of Ggra9384.t1 vs. uniprot
Match: A0A7S3AAX9 (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AAX9_9RHOD)

HSP 1 Score: 300 bits (769), Expect = 1.390e-94
Identity = 165/303 (54.46%), Postives = 201/303 (66.34%), Query Frame = 0
Query:   19 RPTLWDVREFPYGIPVPPAGGSTAFAPHVGRSVAQAPRVEANRAPIPGPSDIVHAPVEGESGPLAGINIEALKALLNPSGV----QAVTPTATSPIPVVTSGDTSVQSTRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYNATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRA 317
            R T WDV+E PYG+P+PPAG S A + H           + N  P P P+          +         A  A++ P+ V    QA    AT   P       + Q+TRHARRLYVGNLPAD+TDA + +FFN+++  + GVES GN V+SVY NL+KRFAFIE RT+ EAAA L +DGV F  M LR+RRPNDYN        PP  FNPS+LGIVSTQV DGPNKVF+GGIPY+LTEDQIK LL +YG L AFNLIK+ NTG+SKG+AFFEY D  ++D AC+GL+GMQ+ DKTLTVRRA
Sbjct:  129 RETYWDVKESPYGVPLPPAGMS-AMSGHA--------EGQGNAVPAPNPA----------AAAXXXXXAIAPNAVVPPASVAQQMQAGELAATMAQP-------TYQATRHARRLYVGNLPADSTDADVSEFFNKSMTVAGGVESPGNPVLSVYLNLDKRFAFIELRTMAEAAAALQMDGVLFRGMSLRMRRPNDYNPIAFPPVEPPASFNPSLLGIVSTQVPDGPNKVFIGGIPYHLTEDQIKELLQAYGPLGAFNLIKDANTGLSKGYAFFEYQDPSIIDVACQGLNGMQINDKTLTVRRA 405          
BLAST of Ggra9384.t1 vs. uniprot
Match: A0A1X6PE36 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PE36_PORUM)

HSP 1 Score: 296 bits (759), Expect = 4.010e-93
Identity = 183/374 (48.93%), Postives = 226/374 (60.43%), Query Frame = 0
Query:  122 STRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYN--ATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRATHTNGTATHASGMLNSM-----------------------------------------GMNGAGTVSKELLLPDISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPRDGERLRRA--VGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDRR 450
            +TRHARRLYVGNLP DT+++QI  FF+ A++ S G ES G AV+SVY NLEKRFAFIE RT+ EA A L++DG+    + LRLRRPNDYN  A  AG   PP  F P+ LGIVSTQV+DGP+KVFVGGIPY+L+ED IK LL SYGAL AFNLIK+P +G+SKG+AFFEY  +D   AAC GL+GM+VG++TL+VR A    G      G                                              G  GA  V+   LL   SRV+ +++ VT EEL DD E+++IV+D+RDE  K G + +VLI RP  G     A  VG+VFV F     A  A   L GR+FG R V A Y +EA F  R
Sbjct:   43 ATRHARRLYVGNLPPDTSESQIGTFFSAAMERSGGAESPGPAVVSVYLNLEKRFAFIELRTLAEAVAALSMDGLLLRGLSLRLRRPNDYNPSAVPAGVTAPPT-FRPAALGIVSTQVADGPHKVFVGGIPYHLSEDHIKELLCSYGALRAFNLIKDPASGLSKGYAFFEYEASDAAAAACAGLNGMKVGERTLSVRMAWDPAGGTPGQGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGVGGGVGAPAVAVAALLRPPSRVLVLHNMVTSEELADDAEHADIVEDVRDECAKAGAVTDVLIPRPGGGGDAAAAPGVGRVFVAFGGVAAAVAAHGMLDGRKFGGRAVVAAYMDEAAFAAR 415          
BLAST of Ggra9384.t1 vs. uniprot
Match: A0A7S0ZE67 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE67_9RHOD)

HSP 1 Score: 292 bits (748), Expect = 2.330e-88
Identity = 206/517 (39.85%), Postives = 279/517 (53.97%), Query Frame = 0
Query:    4 SRRERRXXXXXXXXXRPTLWDVREFPYGIPVPPAGGSTAFAPHVGRSVAQAPRVEANRAPIPGPSDIVHAPVEGESGP-LAGINIEALKAL-------LNPSGV--------QAVTPTATSPIPVVTS-----------GDTSVQSTRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYNATLAG--DPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRAT-----HTNGTATHA--------------SGMLNSMGMNGA-------------------GTVSKELLLPDISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPR---DGERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDRR 450
            SRR+           R + WDV+E PYG P+PP G    F P      AQAP  + N        D   +   G  G  ++G+  E            ++ SG          A      SP P+  +            D + Q TR  RRLYVGNLP DT + +I  FFN  +  S+G ES  + V+SV+ N+EKRFAFIE  T+ EAAA + LDG+ F  M LR+RRP DY+++L+G  + RPP  FN + LGIVSTQV D  NK+F+GGIPY+L EDQIK LL SYG L AFNLIK+ NTG+SKG+AFFE++D  VVD A +G +GM++GDK LTVRRA      H    A+ A              +G  ++  M+GA                   G +++  L    +RV+ + + +  E+L DD+EY +I++D+R+EAG+ G L EVLI RP      E     VG+VF+ F  +  AE+A + L GR+F  R V A Y +E +F RR
Sbjct:  182 SRRKSSRRPKLFEKRRGSFWDVKESPYGFPLPPPG-FVPFRP------AQAPGKD-NSFSRQASGDQASSQATGTEGQAMSGMQREGFGVYGAGFGRGMDMSGYPGQNRNRQNAAGGNQRSPFPIGVAMVPNDEIDFRINDVN-QETRKGRRLYVGNLPTDTNEHEIASFFNSVMVTSKGSESGDSPVLSVFLNMEKRFAFIELTTVAEAAAAICLDGLLFRGMSLRMRRPTDYHSSLSGKQEARPPASFNSAALGIVSTQVRDSSNKMFIGGIPYHLNEDQIKELLQSYGPLKAFNLIKDSNTGLSKGYAFFEFMDPAVVDPAIQGFNGMRIGDKVLTVRRAAVSQREHNAPAASSAPFQSSGAPSASPAVNGGPHAPPMSGAEANQNLPLNSNPAGESEAIGQLAR--LTKKSTRVLELRNMLRREDLIDDEEYQDILEDVREEAGRHGVLTEVLIPRPAPKGSAEPEPAGVGRVFLAFSEQSAAEKAYVVLGGRKFDGRPVIANYVDEEKFARR 687          
BLAST of Ggra9384.t1 vs. uniprot
Match: K3WB93 (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB93_GLOUD)

HSP 1 Score: 283 bits (724), Expect = 1.020e-85
Identity = 172/392 (43.88%), Postives = 242/392 (61.73%), Query Frame = 0
Query:   86 NIEALKALLNPSGV----QAVTPTATSPIPVVTSGDT---SVQSTRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYN-ATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRA-THTNGTAT-HASGMLNS---MGMN------------GAGTVSKELLLPDISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPRDGERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDRRLF 452
            N+ AL   + P+        + P A + +P V +  T   + Q TRHARR+YVG +  D  +A+I +FFN  +  + G   EG AV+SVY N E+ FAF+E R+I    A + LDGV F    L++RRPNDYN +T+  D  P    N + LGIVST VSDGP KVF+GG+PY+L ++Q+K LL ++G L +F+L+KE N+ +SKG+ F EYVD +V D+AC GL+ M++GDKTLTVRRA +  N  A   A+G +NS   MG+N            G G  S  L  P  +RV+ + + VT EELED++EY++IVDD++ E  + G +  +++ RPRDG     AVGKVFV++ +   A+ A   LHGR F  R V  EY +E ++ RR F
Sbjct:  214 NMAALSGAVGPASFGPPPPPIAPPAHAIVPGVVASHTFGGNSQQTRHARRIYVGGI-GDVNEAEISEFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELRSIELTTACMNLDGVSFRGQPLKIRRPNDYNPSTVPKDLGPIPTLNLAALGIVSTTVSDGPGKVFIGGLPYHLNDEQVKELLQAFGPLKSFHLVKELNSNLSKGYGFCEYVDINVTDSACLGLNDMKLGDKTLTVRRAMSQENAKAVASAAGTVNSGLEMGLNPSHAALQAMNLAGFGIPSMPLGTP--TRVIVLLNMVTPEELEDEEEYADIVDDIKGECERFGRVNSIVLPRPRDG--FYSAVGKVFVEYGDVPSAQAAAAELHGRGFSNRTVAVEYMDEHKYARRDF 600          
BLAST of Ggra9384.t1 vs. uniprot
Match: A0A7S1XMC4 (Splicing factor U2AF subunit n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMC4_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.160e-85
Identity = 159/359 (44.29%), Postives = 228/359 (63.51%), Query Frame = 0
Query:  113 VTSGDTSVQSTRHARRLYVGNLPADTTDAQIEDFFNRALKASRGVESEG---NAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDMFLRLRRPNDYNATLA-GDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPYNLTEDQIKNLLSSYGALAAFNLIKEPN-----TGMSKGFAFFEYVDADVVDAACEGLHGMQVGDKTLTVRRATHTN------------GTATHASGMLNSMGMNGAGTVSKELLLPDISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPRDGERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDRR 450
            VT+   ++Q TRHARRLYVGN+  +T D ++ DFF   +  S G   +G   +A++SVY N +++FAF+E RTI   AA +ALDG++F    L++RRPNDYN  L      P    N + LGIVST V DGPNK+F+GG+PY+L+EDQIK LLS++G L AF+L+++ N     T +SKG+AF EY+D  V+  ACEGLHG+Q+GDK LTVR A +              G A  A  M+ + G+  AG ++  +     ++VV +++ VT EEL DD+EY++I+ D+R+E  K G +E++ I RP        AVGK+F+K+ N   A  A  TL GRRF +R V  +Y++ A++D R
Sbjct:  179 VTNHAANMQQTRHARRLYVGNVALNTRDEELRDFFVEVIAKSIGESYKGQAADAIVSVYINADRQFAFVEMRTIEITAACMALDGIEFKGSGLKIRRPNDYNPQLLPAKIGPIPQLNLAALGIVSTSVPDGPNKIFIGGLPYHLSEDQIKELLSAFGQLKAFHLVRDSNPREGQTSLSKGYAFCEYLDPAVMPVACEGLHGLQLGDKQLTVRLAINQQKAVTDVQTGQQVGAAAFAQQMVQA-GLAPAGMMTAPIFSKMPTKVVVLHNMVTAEELADDEEYNDILLDVREECEKHGKIEDIQIPRPNQPLGAPSAVGKIFIKYDNESSAALAATTLQGRRFAERTVETDYYDVAKYDAR 536          
The following BLAST results are available for this feature:
BLAST of Ggra9384.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITS32.680e-21372.42Splicing factor U2AF subunit n=1 Tax=Gracilariopsi... [more]
R7QSG64.380e-18061.85Splicing factor U2AF subunit n=1 Tax=Chondrus cris... [more]
A0A7S3A9844.220e-11249.25Splicing factor U2AF subunit (Fragment) n=2 Tax=Rh... [more]
A0A7S1T4K86.050e-10444.47Splicing factor U2AF subunit n=1 Tax=Compsopogon c... [more]
M2Y3K91.370e-9749.44Splicing factor U2AF subunit n=2 Tax=Galdieria sul... [more]
A0A7S3AAX91.390e-9454.46Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PE364.010e-9348.93Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0ZE672.330e-8839.85Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
K3WB931.020e-8543.88Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1XMC41.160e-8544.29Splicing factor U2AF subunit n=1 Tax=Phaeomonas pa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 354..440
e-value: 0.0017
score: 27.7
coord: 242..315
e-value: 3.8
score: 8.2
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 242..315
e-value: 7.1E-21
score: 85.3
coord: 354..440
e-value: 0.062
score: 17.3
coord: 128..205
e-value: 2.4E-4
score: 30.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 243..312
e-value: 2.1E-15
score: 56.3
coord: 129..202
e-value: 5.3E-5
score: 23.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 241..319
score: 16.721853
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 344..444
score: 10.343133
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 127..209
score: 11.247069
IPR006529U2 snRNP auxilliary factor, large subunit, splicing factorTIGRFAMTIGR01642TIGR01642coord: 109..450
e-value: 4.2E-96
score: 320.4
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 237..292
e-value: 1.6E-48
score: 166.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 350..452
e-value: 5.9E-25
score: 89.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 127..314
e-value: 1.6E-48
score: 166.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR23139RNA-BINDING PROTEINcoord: 5..449
NoneNo IPR availablePANTHERPTHR23139:SF9SPLICING FACTOR U2AF 65 KDA SUBUNITcoord: 5..449
NoneNo IPR availableCDDcd12232RRM3_U2AF65coord: 352..440
e-value: 2.05061E-22
score: 89.1522
NoneNo IPR availableCDDcd12230RRM1_U2AF65coord: 126..207
e-value: 5.32145E-29
score: 106.856
NoneNo IPR availableCDDcd12231RRM2_U2AF65coord: 241..317
e-value: 9.82923E-40
score: 135.436
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 240..444
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 127..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:279901..281259 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9384.t1Ggra9384.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 279901..281259 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9384.t1 ID=Ggra9384.t1|Name=Ggra9384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=453bp
MDHSRRERRASPPRRRRRRPTLWDVREFPYGIPVPPAGGSTAFAPHVGRS
VAQAPRVEANRAPIPGPSDIVHAPVEGESGPLAGINIEALKALLNPSGVQ
AVTPTATSPIPVVTSGDTSVQSTRHARRLYVGNLPADTTDAQIEDFFNRA
LKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDM
FLRLRRPNDYNATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPY
NLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACE
GLHGMQVGDKTLTVRRATHTNGTATHASGMLNSMGMNGAGTVSKELLLPD
ISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPRDG
ERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDRR
LF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR000504RRM_dom
IPR006529U2AF_lg
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf