Ggra9378.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9378.t1
Unique NameGgra9378.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Homology
The following BLAST results are available for this feature:
BLAST of Ggra9378.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 62..85
e-value: 0.33
score: 20.0
coord: 123..146
e-value: 0.031
score: 23.4
coord: 34..57
e-value: 3.4
score: 16.6
coord: 94..117
e-value: 3.5
score: 16.6
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 63..85
e-value: 5.5E-4
score: 20.2
coord: 123..146
e-value: 1.8E-5
score: 25.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 36..57
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 125..146
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 64..85
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 123..147
score: 10.387709
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 34..62
score: 9.535603
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 94..117
score: 8.538013
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 62..90
score: 9.681084
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 4..90
e-value: 1.4E-11
score: 46.2
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 91..153
e-value: 2.9E-11
score: 45.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR24377IP01015P-RELATEDcoord: 20..145
NoneNo IPR availablePANTHERPTHR24377:SF809IP01015P-RELATEDcoord: 20..145
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 93..143
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 35..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:199963..200797 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9378.t1Ggra9378.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 199963..200797 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9378.t1 ID=Ggra9378.t1|Name=Ggra9378.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MDSQKSSRKRRSPDGEVNSEGHSERKSLKIGNQVICRKCGLRFNYEYELG
KHNRNAHSNLPSECPVCFLTFKRASYFRRHFRTIHEGKPRLIPLSCDTCK
QQFSEARILSQHIMELHDKVGDFQCDHCGQKYKQKSHLEVHIVVDHTPMA
GSSTTPSKKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf