Ggra9354.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9354.t1
Unique NameGgra9354.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Homology
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BLAST of Ggra9354.t1 vs. uniprot
Match: A0A2V3IWB3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWB3_9FLOR)

HSP 1 Score: 86.3 bits (212), Expect = 9.680e-18
Identity = 50/89 (56.18%), Postives = 58/89 (65.17%), Query Frame = 0 
Query:  208 VNRARYPQVDNSVPLESVFVDVKPRPPCKVEPTRYRSGEKTLAEWVEANRHVVAGSMFMFYVSLAAWNLRPGKKSKAKESAEGAADAAA 296
            + RAR PQ   ++  E         PP  V  ++YRSGEKTLAEWV+ANRH+VAGSMF FYV LAAWNLRPGKK  A  +    ADA A
Sbjct:   16 IARARTPQQARALATEG--------PP--VSWSQYRSGEKTLAEWVDANRHIVAGSMFAFYVGLAAWNLRPGKKKAAPAATPTDADATA 94
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BLAST of Ggra9354.t1 vs. uniprot
Match: R7QHP3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHP3_CHOCR)

HSP 1 Score: 69.3 bits (168), Expect = 2.010e-11
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0 
Query:  242 YRSGEKTLAEWVEANRHVVAGSMFMFYVSLAAWNLRP-GKKSK-----AKESAE 289
            YR+G+KT AEWV+ANRH+VAGS+F FYV LA W LRP GKK+      AKE+AE
Sbjct:   41 YRAGDKTFAEWVDANRHIVAGSLFGFYVGLAVWKLRPTGKKADEPEAPAKEAAE 94
The following BLAST results are available for this feature:
BLAST of Ggra9354.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IWB39.680e-1856.18Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QHP32.010e-1164.81Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..113
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 114..139
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 140..296
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..32
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 115..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:65273..66675 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9354.t1Ggra9354.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 65273..66675 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9354.t1 ID=Ggra9354.t1|Name=Ggra9354.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MSPATHFVPLLLLSAFSLMITTSATPIHPSHATDVSPLQRIFPPERHICE
GGTAQHSLLREHASIICTRTSFKQPLQCTAGLWSPLLLIRDVNLDCAASQ
RDCTLHYYMDYTPLALFALTCAVIALVMLLLALPMYLAVQKFVQCMHNVE
RQRLLRKARLVKHVSALYLDDMKREGYGSFGGRLHTLGNYSDSLASILDY
DPTSESDVNRARYPQVDNSVPLESVFVDVKPRPPCKVEPTRYRSGEKTLA
EWVEANRHVVAGSMFMFYVSLAAWNLRPGKKSKAKESAEGAADAAA*
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