Ggra9238.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9238.t1
Unique NameGgra9238.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Homology
BLAST of Ggra9238.t1 vs. uniprot
Match: A0A2V3IFE4 (Cleavage stimulating factor 64 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFE4_9FLOR)

HSP 1 Score: 375 bits (962), Expect = 1.490e-127
Identity = 209/336 (62.20%), Postives = 230/336 (68.45%), Query Frame = 0
Query:    1 MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLPQNISTLPNKPGVQNLPPKPGPQMPNHPNMQHGGLPPALASANPSMERMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGM--------------------------------------------------------------------------------GMGEQEAFLQSVMSMTQEEMSRLPSEYRNYMLELKQFLAMHGAGGLNPGMNQXXXXXXXXXGPH 256
            MGRPPGTTVFVGNISYDTTEEQL+EVFSQVGNVVNFRLMHD+ETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPN+ QNI+   +K G QN+  K   Q+P HP++QH  LPPALASANPSMERMSLPE+HQTM+HLKKAIVQNPNEMRDLLLANPRLAQAIMQGQ+MLGM                                                                                GMGEQEA LQ VM+M+QEE+++LP+E+RNY+LELKQFLAMHGAGG+NPGMNQ         G H
Sbjct:    1 MGRPPGTTVFVGNISYDTTEEQLHEVFSQVGNVVNFRLMHDSETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNIAQNITPPASKQGGQNVGQKNVHQVP-HPHLQHAALPPALASANPSMERMSLPEVHQTMLHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQLMLGMVPPPMMPAPQAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVXXXXXXXXXXXXXXXXXXXXXMPHALMQMPGLPFAQGMGEQEALLQGVMNMSQEEINQLPAEHRNYVLELKQFLAMHGAGGINPGMNQPMPPGMPPGGNH 335          
BLAST of Ggra9238.t1 vs. uniprot
Match: R7QCA3 (RNA recognition motif-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCA3_CHOCR)

HSP 1 Score: 238 bits (606), Expect = 8.400e-75
Identity = 128/192 (66.67%), Postives = 145/192 (75.52%), Query Frame = 0
Query:    1 MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLPQNISTLPNKPGVQNLPPKPGPQMPNHPNMQHGGLPPALASANPSMERMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGM 192
            MGRPPGTTVFVGNISYDTTE+QL EVFS+VGNVV+FRLM+D++TGRAKG+GFCEYEDKETAMSARRNLNGT LNGRPLRVD TDSDKQ AA NG      +S  P+       PP      P         +P  LASANPSM  M+  EIH  M+HLKKA++QN  ++RDLLLANPRLA AI+ GQIMLGM
Sbjct:    1 MGRPPGTTVFVGNISYDTTEDQLKEVFSEVGNVVSFRLMYDHDTGRAKGFGFCEYEDKETAMSARRNLNGTQLNGRPLRVDLTDSDKQAAAANG------LSLAPDPHAKSPAPPXXXXXNP--------AIPAPLASANPSMAAMTPAEIHAAMLHLKKAVLQNRADLRDLLLANPRLAHAILHGQIMLGM 178          
BLAST of Ggra9238.t1 vs. uniprot
Match: cleavage stimulating factor 64-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0131 (cleavage stimulating factor 64-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0131)

HSP 1 Score: 180 bits (456), Expect = 1.270e-49
Identity = 103/197 (52.28%), Postives = 128/197 (64.97%), Query Frame = 0
Query:    6 GTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLPQNISTLPNKPGVQNLPPKPGPQMPNHP----------NMQHGGLPPALASANPSMERMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGM 192
            G TVFVGNI+YD TE+QL ++FSQVG VVNFR+++D ETGR KGYGFCEYED ETAMSARRNLNG  LNGR LRVDFT+SDK          P N +T     G                          N +H  LP AL+  NPS+  ++LP+IH+ M+ LK+A  + PN++RDLL  +P+LA A++QGQIMLGM
Sbjct:   10 GATVFVGNINYDATEDQLKDIFSQVGVVVNFRVVYDQETGRPKGYGFCEYEDAETAMSARRNLNGYELNGRQLRVDFTESDK----------PGNAATAAGGAGXXXXXXXXXXXXXXXXXXXXXXGVTKNSEHL-LPDALSGPNPSLAMLALPQIHEVMLQLKRAATEFPNDLRDLLANSPQLAHAVLQGQIMLGM 195          
BLAST of Ggra9238.t1 vs. uniprot
Match: M2XKX0 (mRNA splicing factor, putative isoform 2 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XKX0_GALSU)

HSP 1 Score: 153 bits (387), Expect = 1.900e-41
Identity = 90/186 (48.39%), Postives = 122/186 (65.59%), Query Frame = 0
Query:   11 VGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLP---QNISTLPN-KPGVQNLPPKPGPQMPNHPNMQHGGLPPALASANPSMERMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGM 192
            VGNI+Y+T+EEQL E+ SQ+G +++FR+++D ETG+ KGY FCEY D E A+SA RNLNGT LNGR LRVD  DSDK+   ++  N+     N ST  N K G  N     G       N+Q  GL  +   A  S+E++S  +IH+ M+ +K    QNP ++R LLLANP+L  A++QGQIMLG+
Sbjct:   26 VGNIAYNTSEEQLQEILSQIGPILSFRVVYDRETGKPKGYAFCEYPDAEMALSAIRNLNGTELNGRTLRVDLADSDKRELGQSAANMETGNNNPSTASNMKAGALNTSGGTG-------NIQ--GL--SNLGAKGSLEQLSCQQIHEIMLQMKALAQQNPEQVRQLLLANPQLTYALLQGQIMLGL 200          
BLAST of Ggra9238.t1 vs. uniprot
Match: C3ZMC6 (RRM domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZMC6_BRAFL)

HSP 1 Score: 145 bits (365), Expect = 3.720e-39
Identity = 89/221 (40.27%), Postives = 132/221 (59.73%), Query Frame = 0
Query:    8 TVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLPQNISTLPNKPGVQNLPPKPGPQMPNHPNMQHGGLPPALASANPSMERMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGMGMGEQEAFLQSVMSMTQEEMSRLPSEYRNYMLELKQ 228
            +VFVGNI Y+ TEEQL ++FS+VG V++FRL++D ETG+ KGYGFCEY+D+ETA+SA RNLNG  LNGR LRVD   S+K         L Q     P++            + P  P +Q    P A++ A  S+    + E+   M  +K  I  NP E R++LL NP+LA A++Q Q+++ +      A +  V+ ++ E+++ LP E R  ++ LK+
Sbjct:   19 SVFVGNIPYEATEEQLKDIFSEVGPVISFRLVYDRETGKPKGYGFCEYKDQETALSAMRNLNGHELNGRQLRVDNAASEKSKE-----ELKQLTVAGPSQ------------ESPYGPPVQPEDAPEAISQAVASLPPEQMFEL---MKQMKLCIQNNPQEARNMLLQNPQLAYALLQAQVVMRIA-----ALIMQVLQLSPEQIAMLPPEQRQSIMILKE 214          
BLAST of Ggra9238.t1 vs. uniprot
Match: A0A7S3EJ57 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJ57_9RHOD)

HSP 1 Score: 144 bits (364), Expect = 3.060e-38
Identity = 86/193 (44.56%), Postives = 118/193 (61.14%), Query Frame = 0
Query:    2 GRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDK-QIAARNGPNLPQNISTLPNKPGVQNLPPKPGPQMPNHPNMQHGGLPPALASA-NPSMERMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGM 192
            G+P   TVFVGNI +DTTEE L E+FSQVG V +FRL++D +TG+ KG+GFCEYED ETAMSA RNLNG  +NGRPLRV  ++ DK ++  + G  +PQ  ++  N  G                    GG     AS  N   ERM+  ++   M+++K+ I ++   +R LL  +P +  A++QGQIMLGM
Sbjct:    5 GQP--ATVFVGNIPFDTTEEHLKEIFSQVGVVSSFRLVYDQQTGKPKGFGFCEYEDAETAMSALRNLNGVEVNGRPLRVSLSEHDKSRVQEQTGQTVPQGKNSQGNTGG--------------------GGRGDGAASRQNVITERMTPQQVFDVMLNMKELIQKDEGTVRTLLNNDPNMTYALLQGQIMLGM 175          
BLAST of Ggra9238.t1 vs. uniprot
Match: A0A5J4Z720 (Cleavage stimulating factor 64 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z720_PORPP)

HSP 1 Score: 140 bits (354), Expect = 1.180e-36
Identity = 86/189 (45.50%), Postives = 113/189 (59.79%), Query Frame = 0
Query:    7 TTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDK--QIAARNGPNLPQNISTLPNKPGVQNLPPKPGPQMPNHPNMQHGGL-PPALASANPSMERMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGM 192
            +TVFVGNI Y TTEEQL EVF QVGNVV+FR+++D ETG+ KG+GFCEYED ETAMSA RNLN   +NGRPLRVD+T+ +K  Q  A  G         +                  + P +  GG   PA A+   +M  MSL  I   ++ L+  + QNP+ +R LL  N  L+ A++ G +MLG+
Sbjct:   10 STVFVGNIPYGTTEEQLREVFGQVGNVVSFRILYDKETGKPKGFGFCEYEDTETAMSAIRNLNQVEVNGRPLRVDYTEGEKRDQGGASGGXXXXXXXXXV----------------AADAPKIVLGGHGTPAFANGI-AMRDMSLSAIFDVLLQLRDMLHQNPDGLRTLLQGNQALSHAVVMGMMMLGL 181          
BLAST of Ggra9238.t1 vs. uniprot
Match: cleavage stimulation factor subunit 2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0A5D9 (cleavage stimulation factor subunit 2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0A5D9)

HSP 1 Score: 143 bits (361), Expect = 5.080e-36
Identity = 85/183 (46.45%), Postives = 114/183 (62.30%), Query Frame = 0
Query:    8 TVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLPQNISTLPNKPGVQNLPPKPGPQMPNHPNMQHGGLPPALASANPSMERMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIML 190
            +VFVGNI Y+ TEEQL ++FS+VG VV+FRL++D ETG+ KGYGFCEY+D+ETA+SA RNLNG  LNGRPLRVD   S+K            N   L N       PP    + P  P ++    P A++ A  S+    + E+   M  +K  I  NPNE R++LL NP+LA A++Q Q+M+
Sbjct:   12 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRPLRVDNAASEK------------NKEELKNLQASLGGPPT---ESPYGPEVEPEKAPEAISKAVASLPPEQMFEL---MKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVMM 176          
BLAST of Ggra9238.t1 vs. uniprot
Match: A0A314Y7F6 (Cleavage stimulating factor 64 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314Y7F6_PRUYE)

HSP 1 Score: 137 bits (345), Expect = 3.380e-35
Identity = 95/213 (44.60%), Postives = 120/213 (56.34%), Query Frame = 0
Query:    9 VFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDK-----QIAARNGPNLPQNISTLPNKPG----VQNLPPKP--------------GPQMPNHPNMQ--HGGLPPALASANPSME----RMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGM 192
            VFVGNI +D TEEQL E+  +VG VV+FRL+ D ETG+ KGYGFCEY+D+ETA+SARRNL G  +NGR LRVDF ++DK     +   R GP L  N+       G    V+ L  +P              G        +Q    GL   LASAN  +     +MS  +++Q M  LK   VQN    R LLLA P+L +A+ Q QIMLGM
Sbjct:    9 VFVGNIPFDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLTANVDPQKQVVGPSVHVEALQHQPIGLHIAITAATVMAGALGGAQAGLQSSQSGLQNQLASANDPLTLHLAKMSRGQLNQIMSELKVMAVQNKELARQLLLARPQLPKALFQAQIMLGM 221          
BLAST of Ggra9238.t1 vs. uniprot
Match: A0A6A3BGZ9 (Cleavage stimulating factor 64 n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BGZ9_HIBSY)

HSP 1 Score: 140 bits (352), Expect = 7.030e-35
Identity = 98/223 (43.95%), Postives = 125/223 (56.05%), Query Frame = 0
Query:    1 MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDK-----QIAARNGPNLPQNISTLPNKPG--VQ----NLPP--------------------KPGPQMPNHPNMQHGGLPPALASANPSMERMSLPEIHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGM 192
            M  P    VFVGNI YD TEEQL E+  +VG VV+FRL+ D ETG+ KGYGFCEY D+ETA+SARRNL G  +NGR LRVDF ++DK     +  AR GP L  NI +  NK G  VQ    +L P                    + G Q  ++ N   G   PA       + +MS  ++++ M  LKK   Q+    R+LLL+ P+L +AI Q QIMLGM
Sbjct:    1 MAAPQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGQPKGYGFCEYMDEETALSARRNLQGYEINGRQLRVDFAENDKGSDKNREQARGGPGLATNIDSQ-NKGGQAVQGEMFHLQPVGLHSAINAASLMAEALGGVQAGLQ--HNQNALPGQPAPATDPLTLHLAKMSRSQLNEIMSELKKMATQSKERARELLLSKPQLLKAIFQAQIMLGM 220          
The following BLAST results are available for this feature:
BLAST of Ggra9238.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFE41.490e-12762.20Cleavage stimulating factor 64 n=1 Tax=Gracilariop... [more]
R7QCA38.400e-7566.67RNA recognition motif-containing protein n=1 Tax=C... [more]
cleavage stimulating factor 64-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E01311.270e-4952.28cleavage stimulating factor 64-like n=1 Tax=Mercen... [more]
M2XKX01.900e-4148.39mRNA splicing factor, putative isoform 2 n=2 Tax=G... [more]
C3ZMC63.720e-3940.27RRM domain-containing protein n=1 Tax=Branchiostom... [more]
A0A7S3EJ573.060e-3844.56Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z7201.180e-3645.50Cleavage stimulating factor 64 n=1 Tax=Porphyridiu... [more]
cleavage stimulation factor subunit 2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0A5D95.080e-3646.45cleavage stimulation factor subunit 2-like n=1 Tax... [more]
A0A314Y7F63.380e-3544.60Cleavage stimulating factor 64 n=1 Tax=Prunus yedo... [more]
A0A6A3BGZ97.030e-3543.95Cleavage stimulating factor 64 n=3 Tax=Hibiscus sy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..81
e-value: 3.2E-29
score: 113.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..79
e-value: 4.0E-24
score: 84.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..85
score: 21.002758
IPR025742Cleavage stimulation factor subunit 2, hinge domainPFAMPF14327CSTF2_hingecoord: 144..192
e-value: 4.3E-7
score: 30.3
IPR038192Transcription termination and cleavage factor, C-terminal domain superfamilyGENE3D1.10.20.70coord: 195..235
e-value: 1.0E-5
score: 26.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..103
e-value: 2.6E-31
score: 110.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..127
NoneNo IPR availablePANTHERPTHR45735:SF2CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2coord: 6..192
NoneNo IPR availablePANTHERPTHR45735CLEAVAGE STIMULATION FACTOR SUBUNIT 2coord: 6..192
NoneNo IPR availableCDDcd12398RRM_CSTF2_RNA15_likecoord: 9..83
e-value: 7.22315E-44
score: 141.222
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:464299..465444 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9238.t1Ggra9238.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 464299..465444 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9238.t1 ID=Ggra9238.t1|Name=Ggra9238.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGY
GFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLPQN
ISTLPNKPGVQNLPPKPGPQMPNHPNMQHGGLPPALASANPSMERMSLPE
IHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGMGMGEQEAF
LQSVMSMTQEEMSRLPSEYRNYMLELKQFLAMHGAGGLNPGMNQPMPPGM
PPGGPHPPQLQKQFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR025742CSTF2_hinge
IPR038192CSTF_C_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf