Ggra9227.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9227.t1
Unique NameGgra9227.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Homology
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BLAST of Ggra9227.t1 vs. uniprot
Match: A0A2V3IP64 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP64_9FLOR)

HSP 1 Score: 276 bits (706), Expect = 1.350e-89
Identity = 136/236 (57.63%), Postives = 177/236 (75.00%), Query Frame = 0 
Query:   83 MLSRTFLYIVKRRSGAVGPSMAPILIKFWAVYGAFQFFSQVLCLYLAPFHGQVLISCTRAPILMLLCYGRRLQTSCHVYQASIVPFYEANEPEIEGRFQRAKATQSDLDEAFRQLAVYLLQRMAVSGLSSLIPIPRFDTPPAVSGSDNPSQSGKRKEESTPLPQNTAVFPSSRNFFGNESDHRVRTVFAANRENLGGAIQPARAPEMPTAAYHNLRAFRKQLRDRFQKTASGKVAP 318
            ML RTF+YI++R+SG+VGP MAP+L++FWA++GA  F +QVL LYLAPF G +LISC RAP+L+LLCYGRRL  +  +YQ  +VP YE+NEPEIEG+ +RA+  Q+D++E FRQLA YLLQ++AV GL  L+ IPR++T    S    PS S + ++E +PLPQNTAVF SSR+FFG E+DHR R+V A +  NL GAIQPA+  E P AAY + RA R+Q R+R  K    KVAP
Sbjct:    1 MLFRTFMYIIRRKSGSVGPLMAPVLLRFWAMFGAAHFSTQVLTLYLAPFRGHILISCVRAPVLLLLCYGRRLPITSIMYQKYLVPIYESNEPEIEGQLRRARTLQADVNEGFRQLATYLLQQIAVGGLDGLVSIPRYETLQPRSEPQAPSASKRDEQEGSPLPQNTAVFASSRHFFGGETDHRARSVLAVDGHNLDGAIQPAKLSETPKAAYDDARALRRQFRNRTPKNKESKVAP 236
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BLAST of Ggra9227.t1 vs. uniprot
Match: R7QK11 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK11_CHOCR)

HSP 1 Score: 70.9 bits (172), Expect = 2.710e-11
Identity = 50/151 (33.11%), Postives = 73/151 (48.34%), Query Frame = 0 
Query:  177 EGRFQRAKATQSDLDEAFRQLAVYLLQRMAVSGLSSLIPIPRFDTPPAVSGSDNPSQSGKRKEEST--------PLPQNTAVFPSSRNFFGNESDHRVRTVFAANRENLG-GAIQPARAPEMPTAAYHNLRAFRKQLRDRFQKTASGKVAP 318
            E  F +A+     +DEAFR+LA YLL+R+AV GLS  +            G       G+++  ++        P   +T  F S R FF    + R  ++ +A       G IQ A APE P AAY +L+AFR++L  R ++   GK  P
Sbjct:    3 EAIFVQARERGVVIDEAFRELATYLLKRIAVGGLSGAVSDISEAVAAGAEGEQGARAQGRQRAGASAPRDGSRLPSEASTNTFSSGRQFFAGAPEERAESIASAGLPGGAMGVIQMA-APEPPKAAYEDLKAFRRKLSSRVKQREKGKEPP 152
The following BLAST results are available for this feature:
BLAST of Ggra9227.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IP641.350e-8957.63Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QK112.710e-1133.11Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..254
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..63
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 64..69
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 111..129
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 130..319
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..91
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 92..110
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availableTMHMMTMhelixcoord: 107..129
NoneNo IPR availableTMHMMTMhelixcoord: 70..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:425478..426509 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9227.t1Ggra9227.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 425478..426509 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9227.t1 ID=Ggra9227.t1|Name=Ggra9227.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MEMTNLSPVQAFLLRMSTPLTLGGAAYSEANLSPLLRDEDISVGALSISW
STFDFLTSVVKAIPWRRLPVLCNFMSFLLICTMLSRTFLYIVKRRSGAVG
PSMAPILIKFWAVYGAFQFFSQVLCLYLAPFHGQVLISCTRAPILMLLCY
GRRLQTSCHVYQASIVPFYEANEPEIEGRFQRAKATQSDLDEAFRQLAVY
LLQRMAVSGLSSLIPIPRFDTPPAVSGSDNPSQSGKRKEESTPLPQNTAV
FPSSRNFFGNESDHRVRTVFAANRENLGGAIQPARAPEMPTAAYHNLRAF
RKQLRDRFQKTASGKVAPG*
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