Ggra9213.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9213.t1
Unique NameGgra9213.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Homology
BLAST of Ggra9213.t1 vs. uniprot
Match: A0A2V3IP63 (RNA-binding protein Musashi-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP63_9FLOR)

HSP 1 Score: 561 bits (1446), Expect = 7.240e-199
Identity = 290/355 (81.69%), Postives = 319/355 (89.86%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVDIDHEIMQKHVEVKRAEPKQALEARRGREAAGAALPFSSSQPSSSSFNVSPQKQHTHLPQTSQTLQSHLASATSIPYASFPSALPNAAPLSMARSPPTQAPFQSFSPWSGVFSSGAGSSWNAVQSSSAFVSTKMKEAVSMRNSHSAATGATSISPPSSSIASQSSPRATPAGMGFFTPAQPYSPDLAQCAYDAFYSPSAPLTSFASDLASVIPSARTERRFHPYSTRERIERSYR 355
            MRDRLTGHPRGFGFVTY+DQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSR+NAWRATKKVFIGGLPATCRE+DLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVDIDHEIMQKHVEVKRAEPKQAL+ARRGREAA A LPFSS+Q S+SS +VSPQKQ +HL QTSQ LQSHLASA SIPY S+PSALPN + +++ARSPP Q+PF S SPWSGVFSSGAGSSW +VQ+SS + S K+K+  S+R+ H +     S+SP SS++ SQ++ R +PAGMGFFTPAQ YSPDLAQCAYDAFY+ SAPL SFASDL SVIPS RTERRFHPYSTRERIERSYR
Sbjct:   51 MRDRLTGHPRGFGFVTYEDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRSNAWRATKKVFIGGLPATCREADLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVDIDHEIMQKHVEVKRAEPKQALDARRGREAAAAPLPFSSTQSSTSSLHVSPQKQQSHLSQTSQNLQSHLASAVSIPYGSYPSALPNTSSIALARSPPAQSPFHSISPWSGVFSSGAGSSWTSVQASSGYGSGKVKDPTSIRSVHPSGVAPNSLSPQSSAVPSQTTSRTSPAGMGFFTPAQSYSPDLAQCAYDAFYAASAPLNSFASDLTSVIPSTRTERRFHPYSTRERIERSYR 405          
BLAST of Ggra9213.t1 vs. uniprot
Match: R7Q6L6 (HnRNP-like protein, RNA recognition motif (RRM)-containing protein (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6L6_CHOCR)

HSP 1 Score: 352 bits (902), Expect = 1.320e-116
Identity = 214/376 (56.91%), Postives = 249/376 (66.22%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVDID-HEIMQKHVEVKRAEPKQALEARRGREAAGAALPFSSSQPSSSSFN---------VSPQKQHT-----HLPQTSQTLQSHLASATSIPYASFPSALPNAAPLSMARSPPTQAPFQSFSPWSGVFSSG----AGSSWNA-VQSSSAFVSTKMKEAVSMRNSHSAATGATSISPPSSSIASQSSPRATPAGMGFFTPAQPYSPDLAQCAYDAFYSPSAPLTSFASDL-ASVIPSARTERRFHPYSTRERIERSYR 355
            MRDRLTGHPRGFGFVTYDDQLVAERVA EFHELDGRQVEAKIAVPRSECVP  R NAWRATKKVF+GGLPATCRE++L AHF RFGD+AECQVMYDHQTGNSRGFGFVTFTSE TVD VVD+D HEI+ KHVEVKRAEPKQALEARRGREA                            +  K HT     H P  +    +  AS  +IP          + P +   +P  Q+PF  F PWS +FSS     +GSSW+A V +  A ++     ++ + + +S AT  TS+    SS+ S S+     +GMGFFTPAQPY+PDLAQC Y+A+Y  S     F     A  +PSAR ERRFHPY TRER++RSYR
Sbjct:   23 MRDRLTGHPRGFGFVTYDDQLVAERVATEFHELDGRQVEAKIAVPRSECVPALRTNAWRATKKVFVGGLPATCREAELLAHFKRFGDVAECQVMYDHQTGNSRGFGFVTFTSEATVDTVVDLDQHEILAKHVEVKRAEPKQALEARRGREAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVAKHHTQSVTAHAPYAAVAATNSAASVPAIP----------SPPSASHSTPAAQSPFPGFGPWSSLFSSAPGASSGSSWSALVAAERASLNAAPGPSLPVSSPNSNATS-TSVPAGGSSLRSPSN-----SGMGFFTPAQPYTPDLAQCVYNAYYGSSTTPEGFEIGAHAQGLPSARAERRFHPYPTRERVDRSYR 382          
BLAST of Ggra9213.t1 vs. uniprot
Match: A0A7S1TL02 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TL02_9RHOD)

HSP 1 Score: 199 bits (507), Expect = 3.540e-57
Identity = 95/153 (62.09%), Postives = 123/153 (80.39%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVDIDH-EIMQKHVEVKRAEPKQALEARRGREAAG 152
            MRDR TGHPRGFGFVT+ D  VA RVA E HELDGR VEAK+A+PR+EC  P R N  +A+KKVF+GGLP+ C +++LH +F  FG + EC VMYDHQTGNSRGFGFVTF+  +++D+V++I+H +I+ K+VEVKRAEPKQ LE+R+ + + G
Sbjct:  114 MRDRSTGHPRGFGFVTFMDGTVAYRVAHEKHELDGRPVEAKLALPRNECPTPQRTNGSKASKKVFVGGLPSNCGDTELHRYFQHFGTVMECLVMYDHQTGNSRGFGFVTFSDLVSIDRVMEIEHHKILGKYVEVKRAEPKQVLESRKSKPSNG 266          
BLAST of Ggra9213.t1 vs. uniprot
Match: A0A7S0ZCZ9 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZCZ9_9RHOD)

HSP 1 Score: 184 bits (467), Expect = 2.480e-50
Identity = 85/152 (55.92%), Postives = 117/152 (76.97%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRN-NAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVDIDHEIMQKHVEVKRAEPKQALEARRGREAA 151
            MRDR +GHPRGFGFVT++D   A+RVA E HELDGR VEAK AVPR+EC P +R   + R ++K+F+GGLPA+C +  L  HF+ +G++ E QVMYDH TGNSRGF FVT++ + ++D+V++++H +M K VEVK AEPK  L+A++ R+ A
Sbjct:   48 MRDRNSGHPRGFGFVTFEDDFAADRVAREKHELDGRLVEAKKAVPRAECTPSTRAVTSSRGSRKIFVGGLPASCDDESLKTHFMSYGEVLEAQVMYDHNTGNSRGFAFVTYSDDSSIDRVMEVEHFVMGKLVEVKHAEPKHLLDAKKTRDPA 199          
BLAST of Ggra9213.t1 vs. uniprot
Match: A0A5J4Z311 (Putative RNA-binding protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z311_PORPP)

HSP 1 Score: 177 bits (448), Expect = 3.110e-46
Identity = 83/162 (51.23%), Postives = 117/162 (72.22%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVDIDHEIMQKHVEVKRAEPKQALEARRGREAAGAALPFSSSQP 162
            MRDR++GHPRGFGFVT++D+ V++ VAAE HELDGR VEAK AVPRS+C    +  + + ++K+F+GGLP+ C + +   +F RFG+I E  VM+DH TGNSRGFGFVT+  +  VD V+ ++HEI+ K VE+K AEPK  ++AR+ ++ +    P S   P
Sbjct:  258 MRDRVSGHPRGFGFVTFEDEAVSDHVAAEQHELDGRAVEAKRAVPRSDCSGAVKVPSSKGSRKLFVGGLPSACGDHEFRTYFSRFGEILELSVMFDHTTGNSRGFGFVTYYDDRAVDLVMQMEHEILGKRVEIKHAEPKHLMDARKTKDGSSGTGPGSGLTP 419          
BLAST of Ggra9213.t1 vs. uniprot
Match: M2XIP2 (Heterogeneous nuclear ribonucleoprotein A1/A3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XIP2_GALSU)

HSP 1 Score: 164 bits (415), Expect = 7.720e-44
Identity = 84/153 (54.90%), Postives = 109/153 (71.24%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVD-IDHEIMQKHVEVKRAEPKQALEARRGREAAG 152
            MRD+ TGHPRGFGFVT++ +  A+R A + HELDGRQVEAK AVP++E +  +R+   + T+K+F+GGLP +C E D   +F R G + E  +MYDHQTG SRGFGFVTF+SE  V+KV +   HEI  K VEVK+AEPK   E RR ++  G
Sbjct:   82 MRDKHTGHPRGFGFVTFEKEESADRAATKRHELDGRQVEAKKAVPKAEYI--TRSQVTKPTRKIFVGGLPLSCTEEDFMEYFERLGHVVEAHIMYDHQTGISRGFGFVTFSSEDMVEKVFEQSQHEIKGKIVEVKKAEPKHFSEGRRMKDLGG 232          
BLAST of Ggra9213.t1 vs. uniprot
Match: R7QHG3 (Putative Heterogeneous nuclear ribonucleoprotein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHG3_CHOCR)

HSP 1 Score: 160 bits (404), Expect = 5.550e-41
Identity = 89/152 (58.55%), Postives = 104/152 (68.42%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRNNAWRATK-KVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVV-----DIDHEIMQKHVEVKRAEPKQALEARR 146
            MRDR TGHPRGFGFVT+ D   A   A+  H+LDGRQVEAK AVPR+E        A   TK KVF+GGLP++C   +  A+F +FG++ + QVM DH TGNSRGFGFVTF SE TV+ VV     + DHEIM K VEVKRAEPK A   RR
Sbjct:  186 MRDRHTGHPRGFGFVTFADDDAAGAAASRRHDLDGRQVEAKRAVPRNE-------GAHHTTKCKVFVGGLPSSCGPDEFRAYFSQFGEVVDAQVMIDHNTGNSRGFGFVTFGSEATVNSVVGPGKSNTDHEIMGKCVEVKRAEPKGAPNDRR 330          
BLAST of Ggra9213.t1 vs. uniprot
Match: M2XNR8 (Heterogeneous nuclear ribonucleoprotein A1/A3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XNR8_GALSU)

HSP 1 Score: 152 bits (384), Expect = 1.550e-39
Identity = 80/151 (52.98%), Postives = 106/151 (70.20%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVDID-HEIMQKHVEVKRAEPK-QALEARRGRE 149
            MRD+ TGHPRGFGFVT+ D  VA+ VA+  H LDGRQVEAK AVP++E    ++N   + TKK+F+GG+ ++C + D   +F +FG + +  +MYDHQTG SRGFGF+TF S   VDKV     H I  K VEVK AEPK Q++E+R+ +E
Sbjct:   63 MRDKYTGHPRGFGFVTFQDDSVADLVASLSHILDGRQVEAKKAVPKAEV--STKNETTKTTKKLFVGGISSSCSDEDFLVYFQKFGAVLDAHIMYDHQTGKSRGFGFITFCSVEAVDKVFQTPRHVIKGKVVEVKVAEPKHQSVESRKVKE 211          
BLAST of Ggra9213.t1 vs. uniprot
Match: A0A2V3J3F1 (Putative RNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3F1_9FLOR)

HSP 1 Score: 152 bits (384), Expect = 2.760e-38
Identity = 90/177 (50.85%), Postives = 108/177 (61.02%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSE----CVPPSRNNAWRA---------------------TK-KVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVV-----DIDHEIMQKHVEVKRAEPKQALEARR 146
            MRDR TGHPRGFGFVT+ D+  A   A+  H+LDGRQVEAK AVPRSE       P  N ++ A                     TK KVF+GGLP+ C   +  A+F +FG++ + QVM DH TGNSRGFGFVTF +E TV+ VV     + DHEIM K VEVKRAEPK   + RR
Sbjct:  144 MRDRHTGHPRGFGFVTFADEDAATAAASRRHDLDGRQVEAKRAVPRSEGSSASTAPGHNPSFPAAPRGQRYNDAPGAPPHRAHHTTKCKVFVGGLPSGCGGEEFRAYFSQFGEVIDAQVMIDHNTGNSRGFGFVTFANEATVNAVVGPGKSNTDHEIMGKCVEVKRAEPKGVSQDRR 320          
BLAST of Ggra9213.t1 vs. uniprot
Match: S8D6B9 (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D6B9_9LAMI)

HSP 1 Score: 145 bits (366), Expect = 2.590e-37
Identity = 75/142 (52.82%), Postives = 95/142 (66.90%), Query Frame = 0
Query:    1 MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECVPPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTGNSRGFGFVTFTSELTVDKVVDID--HEIMQKHVEVKRAEPKQ 140
            M D++TG PRGFGFVT+ DQ VAE+V  + H +DGR VE K  VPR E     ++     TKK+F+GGLP +  E DL  +F  +G I E Q+M DH+TG SRGFGFVTF SE  V+KV+     HE+  K VE+KRAEPK+
Sbjct:   32 MMDKVTGRPRGFGFVTFSDQEVAEKVLQQDHVIDGRSVEVKRTVPREEY----QSRGVSKTKKIFVGGLPVSMNEDDLREYFSSYGTIVEHQIMLDHKTGRSRGFGFVTFDSEDAVEKVLSDGRMHELSGKQVEIKRAEPKR 169          
The following BLAST results are available for this feature:
BLAST of Ggra9213.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IP637.240e-19981.69RNA-binding protein Musashi-like n=1 Tax=Gracilari... [more]
R7Q6L61.320e-11656.91HnRNP-like protein, RNA recognition motif (RRM)-co... [more]
A0A7S1TL023.540e-5762.09Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0ZCZ92.480e-5055.92Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z3113.110e-4651.23Putative RNA-binding protein n=1 Tax=Porphyridium ... [more]
M2XIP27.720e-4454.90Heterogeneous nuclear ribonucleoprotein A1/A3 n=1 ... [more]
R7QHG35.550e-4158.55Putative Heterogeneous nuclear ribonucleoprotein n... [more]
M2XNR81.550e-3952.98Heterogeneous nuclear ribonucleoprotein A1/A3 n=1 ... [more]
A0A2V3J3F12.760e-3850.85Putative RNA-binding protein n=1 Tax=Gracilariopsi... [more]
S8D6B92.590e-3752.82Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 63..134
e-value: 8.2E-20
score: 81.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 64..124
e-value: 1.5E-15
score: 56.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 62..138
score: 16.124914
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 53..146
e-value: 1.2E-23
score: 85.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..49
e-value: 1.7E-9
score: 39.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..187
NoneNo IPR availablePANTHERPTHR48032RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6coord: 1..275
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..51
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 57..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:397928..398995 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9213.t1Ggra9213.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 397928..398995 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9213.t1 ID=Ggra9213.t1|Name=Ggra9213.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECV
PPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTG
NSRGFGFVTFTSELTVDKVVDIDHEIMQKHVEVKRAEPKQALEARRGREA
AGAALPFSSSQPSSSSFNVSPQKQHTHLPQTSQTLQSHLASATSIPYASF
PSALPNAAPLSMARSPPTQAPFQSFSPWSGVFSSGAGSSWNAVQSSSAFV
STKMKEAVSMRNSHSAATGATSISPPSSSIASQSSPRATPAGMGFFTPAQ
PYSPDLAQCAYDAFYSPSAPLTSFASDLASVIPSARTERRFHPYSTRERI
ERSYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf