Ggra9212.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9212.t1
Unique NameGgra9212.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Homology
BLAST of Ggra9212.t1 vs. uniprot
Match: A0A2V3IP98 (Protein LHY n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP98_9FLOR)

HSP 1 Score: 210 bits (535), Expect = 4.080e-63
Identity = 113/167 (67.66%), Postives = 131/167 (78.44%), Query Frame = 0
Query:  129 FATNKERIKHELEMALQKPAQTTPSRTNSERSFVSTQANSSRSVHSPIANKRVSKTKRSXXXXXKRTRAPARPWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSYLTRISGPTMPLNQ 295
            F T+KERIK ELE AL      +   ++ E SFVS++++S  S  S      V ++ R      KR RAPARPWTEEEHQRFK SLELYGRNWE+CAKYIGTRRAQLVRSHAQKYLIKLWKLG PLP KVAESG+GYTLSGKPLLA+SASA+SYLTRI+GPT+P++Q
Sbjct:  141 FQTDKERIKRELEAALGTSLALSEHHSHPETSFVSSKSDSPASPRSNSMGV-VRESNRQKRTKNKRARAPARPWTEEEHQRFKASLELYGRNWEKCAKYIGTRRAQLVRSHAQKYLIKLWKLGKPLPKKVAESGKGYTLSGKPLLAESASARSYLTRITGPTVPVDQ 306          
BLAST of Ggra9212.t1 vs. uniprot
Match: A0A7S3A4L0 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A4L0_9RHOD)

HSP 1 Score: 112 bits (279), Expect = 7.820e-26
Identity = 52/88 (59.09%), Postives = 72/88 (81.82%), Query Frame = 0
Query:  196 RAPARPWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSYL 283
            +AP + W+E+E  RF E+L+LYGR+W++CA+++GTR A   RSHAQKY I+L+K GLP+P KVAE+G G+TLSGKPL  +SA+A+ YL
Sbjct:  133 KAPVK-WSEDEETRFLEALQLYGRDWKKCAQHVGTRDANNFRSHAQKYFIRLYKHGLPVPRKVAETGEGHTLSGKPLDPNSAAARCYL 219          
BLAST of Ggra9212.t1 vs. uniprot
Match: A0A7S3CGA4 (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CGA4_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 2.420e-25
Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 0
Query:  178 NKRVSKTKRSXXXXXKRTRAPARPWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSY 282
            N+  ++T R       + R   R W EEE + F+E+L LYGR+W++CA ++GTR  +   SHAQKY IK+   G PLP KVAESG GYTLSGKPL  +SA+A++Y
Sbjct:   18 NQEYTETGRKKRKDAGKARTAPRAWNEEEERLFREALRLYGRSWKECAAHVGTRDQRSFTSHAQKYFIKMCLQGKPLPRKVAESGEGYTLSGKPLDPNSAAARAY 122          
BLAST of Ggra9212.t1 vs. uniprot
Match: M2Y7K9 (Cytochrome-b5 reductase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y7K9_GALSU)

HSP 1 Score: 115 bits (287), Expect = 3.910e-25
Identity = 54/87 (62.07%), Postives = 73/87 (83.91%), Query Frame = 0
Query:  197 APARPWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSYL 283
            AP++ WTEEE +RF E+L L+GR+W++CA+Y+GTR A   RSHAQKY I+L+K GLP+P KVAESG+G+TLSGKPL  +SA+A+ Y+
Sbjct:  103 APSK-WTEEEEKRFLEALNLFGRDWQKCAEYMGTRDANNFRSHAQKYFIRLYKQGLPVPPKVAESGQGHTLSGKPLDPNSAAARCYI 188          
BLAST of Ggra9212.t1 vs. uniprot
Match: A0A5B8MP63 (Myb-like, SWIRM and MPN domain-containing protein 1 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MP63_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 9.310e-25
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 0
Query:  178 NKRVSKTKRSXXXXXKRTRAPARPWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSY 282
            N+  S T R       + R P R WT EE + F+E+L+LYGRNW++CA ++GTR  +   SHAQKY IK+   G PLP KVAESG GYTLSGKPL  +SA+A++Y
Sbjct:   67 NQEYSATGRKKRKDAGKLRTPPRAWTPEEERLFREALKLYGRNWKECASHVGTRDQRSFTSHAQKYFIKMCLQGKPLPRKVAESGEGYTLSGKPLDPNSAAARAY 171          
BLAST of Ggra9212.t1 vs. uniprot
Match: A0A7S0RL37 (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RL37_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 3.370e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 0
Query:  195 TRAPARPWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSY 282
            TRA +RPWT+EE + F E+L LYGR W++ A ++GTR A+   SHAQKY I+L   G PLP KV ESG GYTLSGKPL   SA+A+ Y
Sbjct:   97 TRAASRPWTDEEEKLFVEALRLYGRKWKEAAAHVGTRDARAFTSHAQKYFIRLCLQGRPLPEKVRESGEGYTLSGKPLDPLSAAARQY 184          
BLAST of Ggra9212.t1 vs. uniprot
Match: A0A061SC62 (Cytochrome-b5 reductase (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SC62_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 9.590e-24
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0
Query:  196 RAPARPWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSY 282
            R  AR WT EE  +F E+L LYGRNW++CA+++GTR A+   SHAQKY IKL   G  LP KVAESG GYTLSGKPL   SA+A++Y
Sbjct:  109 RTKARAWTAEEEVKFLEALSLYGRNWKKCAEHVGTRDARSFTSHAQKYFIKLCLQGKRLPPKVAESGEGYTLSGKPLDPQSAAARAY 195          
BLAST of Ggra9212.t1 vs. uniprot
Match: A0A7J7ILM5 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ILM5_9RHOD)

HSP 1 Score: 107 bits (268), Expect = 2.290e-23
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 0
Query:  202 WTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSYL 283
            W+ +E QRF E+LELYGR+W++ A ++GTR A   RSHAQKY IKL+K G P+P KVAE+G G+TLSGKPL  +SA+A++YL
Sbjct:  141 WSPDEEQRFVEALELYGRDWKRAAAHVGTRNASNFRSHAQKYFIKLYKEGRPVPPKVAETGAGHTLSGKPLDPNSAAARAYL 222          
BLAST of Ggra9212.t1 vs. uniprot
Match: A0A7S2AP18 (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2AP18_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 5.280e-23
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 0
Query:  196 RAPARPWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSY 282
            R   R WTEEE ++F E+L++YGR+W +CA+++ TR ++   SHAQK+ IKL   G PLP KVAESG GYTLSGKPL  +SA+A +Y
Sbjct:   70 RQKPRAWTEEEEKKFLEALDMYGRDWHKCAEHMQTRESKAFTSHAQKHFIKLCLQGKPLPAKVAESGEGYTLSGKPLDPNSAAALAY 156          
BLAST of Ggra9212.t1 vs. uniprot
Match: M1V9P6 (Myb-like, SWIRM and MPN domain-containing protein 1 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V9P6_CYAM1)

HSP 1 Score: 108 bits (269), Expect = 1.160e-22
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 0
Query:  202 WTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPNKVAESGRGYTLSGKPLLADSASAKSYL 283
            W+ EE QRF E+LELYGR+W + A ++GTR A   RSHAQKY IKL+K G P+P KVAE+G G+TLSGKPL  +SA+A++YL
Sbjct:  154 WSPEEEQRFLEALELYGRDWRRAAAHVGTRSASNFRSHAQKYFIKLYKEGRPVPPKVAETGAGHTLSGKPLDPNSAAARAYL 235          
The following BLAST results are available for this feature:
BLAST of Ggra9212.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IP984.080e-6367.66Protein LHY n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A7S3A4L07.820e-2659.09Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3CGA42.420e-2550.48Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
M2Y7K93.910e-2562.07Cytochrome-b5 reductase n=1 Tax=Galdieria sulphura... [more]
A0A5B8MP639.310e-2553.33Myb-like, SWIRM and MPN domain-containing protein ... [more]
A0A7S0RL373.370e-2459.09Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A061SC629.590e-2460.92Cytochrome-b5 reductase (Fragment) n=1 Tax=Tetrase... [more]
A0A7J7ILM52.290e-2360.98Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S2AP185.280e-2356.32Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
M1V9P61.160e-2262.20Myb-like, SWIRM and MPN domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 198..246
e-value: 1.7E-9
score: 47.5
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 194..244
score: 6.655313
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 201..244
e-value: 6.48344E-9
score: 49.111
NoneNo IPR availableGENE3D1.10.10.60coord: 202..247
e-value: 6.6E-13
score: 50.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..195
NoneNo IPR availablePANTHERPTHR12802:SF20MYB-LIKE PROTEIN Gcoord: 155..249
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 155..249
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 201..244
e-value: 2.0E-10
score: 40.7
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 200..248
score: 13.784984
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 200..246
e-value: 1.6E-9
score: 35.9
IPR017884SANT domainPROSITEPS51293SANTcoord: 202..231
score: 9.550932
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 196..247

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:396156..397049 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9212.t1Ggra9212.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 396156..397049 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9212.t1 ID=Ggra9212.t1|Name=Ggra9212.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MDSFEAHSEWMRHAVLPPDLQQLDQCQPPSLTMSEPFAHQPIPLFDLPAS
PTAPDVHTASCSGATHLELAESVAERTDDHSASLLMPVADCDADAYTNTS
PALTLFHLPEQAVFAQQQHAFSKLHHSYFATNKERIKHELEMALQKPAQT
TPSRTNSERSFVSTQANSSRSVHSPIANKRVSKTKRSKTNKSKRTRAPAR
PWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKL
GLPLPNKVAESGRGYTLSGKPLLADSASAKSYLTRISGPTMPLNQNN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR006447Myb_dom_plants
IPR017884SANT_dom
IPR009057Homeobox-like_sf