Ggra9181.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9181.t1
Unique NameGgra9181.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Homology
BLAST of Ggra9181.t1 vs. uniprot
Match: A0A2V3IPC7 (Translation initiation factor IF-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPC7_9FLOR)

HSP 1 Score: 153 bits (386), Expect = 3.640e-43
Identity = 89/184 (48.37%), Postives = 120/184 (65.22%), Query Frame = 0
Query:    1 MSPQQALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFKRGQGGLKHSATQSLINAALALAPFGNVQGLPPSASIHDLFKS--DGEEQPQQRKPLELVLQPLPKTQREKLSTD 182
            MS + AL  AR  GKDLMQ+T+ KS+    +PLPVVRI+DY                         +KQSVLKQIRFSP+TD +DM IK++HA +FL++GYRVK+Y+QF+RG G LK  A Q+LI AA  L+ +G VQG+P   ++  LF+   D E+  Q R+PL + +QPLPK QREKL+++
Sbjct:   55 MSGRDALYRARTAGKDLMQLTVSKSDTD--APLPVVRIVDYEQXXXXXXXXXXXXXXXXXXXXXXQKKQSVLKQIRFSPVTDPHDMHIKMQHAQRFLLEGYRVKIYVQFRRGHGKLKRDAKQALIKAAHQLSAYGVVQGIPSGGTVDSLFEQPPDAEQHEQPRRPLHIFIQPLPKQQREKLTSE 236          
BLAST of Ggra9181.t1 vs. uniprot
Match: R7Q6Y2 (Translation initiation factor IF3, mitochondrial n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6Y2_CHOCR)

HSP 1 Score: 140 bits (354), Expect = 2.160e-38
Identity = 82/185 (44.32%), Postives = 119/185 (64.32%), Query Frame = 0
Query:    1 MSPQQALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFKRGQGGLKHSATQSLINAALALAPFGNVQGLPPSASIHDLFKSDGEEQPQ-----QRKPLELVLQPLPKTQREKLS 180
            M  ++AL EAR  G+DLM++      + HA P PVVRI+DY A +  R KK Y  +K  K+ +   RK+  LKQ+R SP TD +DM+IK++ A +FL DGYRV+VYMQF+RGQG L+  A  +L+ AA  L   G V G+P    + D+FK + E++       ++KPLE+++QPL + +RE L+
Sbjct:   54 MPSRKALSEARGLGRDLMEV------NGHAKP-PVVRIVDYTALQSARAKKSYDARKRGKENRKMERKEGALKQVRLSPSTDTHDMQIKMRRAREFLCDGYRVRVYMQFRRGQGRLQEDAKAALVAAAERLEEVGTVMGVPQGKEVADMFKVEKEDEEAMGVTVKKKPLEILIQPLSRKKRELLN 231          
BLAST of Ggra9181.t1 vs. uniprot
Match: A0A7V2F529 (Translation initiation factor IF-3 n=2 Tax=Bacteria TaxID=2 RepID=A0A7V2F529_RHOMR)

HSP 1 Score: 72.4 bits (176), Expect = 1.200e-12
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 0
Query:    6 ALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFKRGQGGLKHSA----TQSLINA 127
            AL  AR +G DL++I        HA P PV +I+DYG F       RY+QQK  K+ + + + Q + K+IRF P TD +D   K KHA QFL DG +VK ++QF RG+  +   A     Q LINA
Sbjct:   35 ALEMARQRGLDLVEIA------PHADP-PVCKIVDYGKF-------RYEQQKKEKEARRKQQAQQI-KEIRFRPHTDTHDFEFKAKHARQFLEDGNKVKAWVQF-RGRDIIYQEAGLEVLQRLINA 144          
BLAST of Ggra9181.t1 vs. uniprot
Match: A0A848Y1I5 (Translation initiation factor IF-3 n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848Y1I5_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 2.860e-12
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0
Query:    5 QALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFK 110
            QAL  A  +G DL++I+       +A P PV +I+D+G +       RY+QQK  K+++ +  KQ  LK++RF P TD +D   KLKHA +FL +G +VK ++QF+
Sbjct:   43 QALAAAEQRGLDLVEIS------PNADP-PVTKIMDFGKY-------RYEQQKKVKEQRKKQAKQGELKEVRFRPRTDTHDYGFKLKHAREFLEEGNKVKAWVQFR 134          
BLAST of Ggra9181.t1 vs. uniprot
Match: A0A3C1YQM6 (Translation initiation factor IF-3 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3C1YQM6_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 5.810e-12
Identity = 51/137 (37.23%), Postives = 74/137 (54.01%), Query Frame = 0
Query:    1 MSPQQALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFKRGQGGLKHSATQSLINAALALAPFGNV 137
            MSP++AL  A  +GKDL+++        +A+P PV +I+D+G F+ + QKK   Q+K        H+  S LK++RF P TD +D   K KHA QFL DG +VK  + FK  +   K    + L      LA +  V
Sbjct:   30 MSPREALAIAVQRGKDLIEVV------PNATP-PVCKIMDFGKFKYEIQKKEKLQKK--------HQHVSQLKELRFHPSTDTHDFEFKAKHAIQFLEDGDKVKATVIFKGREVAYKERGFELLNQLTEKLAAYSKV 151          
BLAST of Ggra9181.t1 vs. uniprot
Match: A0A259U3I2 (Translation initiation factor IF-3 n=2 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259U3I2_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.040e-11
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 0
Query:    5 QALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFK 110
            QA+  A+ +G DL++I+       +A P PV +I+D+G +       RY+QQK  K+++ +  KQ  LK+IRF P TD +D   K KHA +FL +G++VK ++QF+
Sbjct:   46 QAIEIAQNRGMDLVEIS------PNADP-PVAKIMDFGKY-------RYEQQKKLKEQRKKQAKQGELKEIRFRPRTDDHDYDFKTKHAREFLEEGHKVKAWVQFR 137          
BLAST of Ggra9181.t1 vs. uniprot
Match: A0A7V8BP92 (Translation initiation factor IF-3 n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V8BP92_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 1.050e-11
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 0
Query:    5 QALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFK 110
            +ALR+AR +  DL++I        +A P PV +I+DYG +       RY+ QK  K  + +H  Q  +K++RF P TD +D + K+KHA  FL DGY+VK+ + +K
Sbjct:   27 EALRKAREENLDLLEIV------PNAEP-PVCKIIDYGKY-------RYEIQKREKDARKKHTHQGEVKELRFRPATDDHDYQFKMKHAFNFLKDGYKVKLVIVYK 118          
BLAST of Ggra9181.t1 vs. uniprot
Match: A0A800J8M1 (Translation initiation factor IF-3 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800J8M1_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 1.150e-11
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 0
Query:    1 MSPQQALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFK 110
            M   QAL  A  +G DL+ I+       +A P PV +I+D+G +       RY+QQK  K+++ +  KQ  LK++RF P TD +D   K KHA +FL +G++VK ++QF+
Sbjct:   42 MPTSQALDAASQRGLDLVVIS------PNADP-PVAKIMDFGKY-------RYEQQKKAKEQRKKQAKQGELKEVRFRPRTDDHDYEFKTKHAREFLEEGHKVKAWVQFR 137          
BLAST of Ggra9181.t1 vs. uniprot
Match: translation initiation factor IF-3 n=1 Tax=Rubrivirga sp. SAORIC476 TaxID=1961794 RepID=UPI001E336EEE (translation initiation factor IF-3 n=1 Tax=Rubrivirga sp. SAORIC476 TaxID=1961794 RepID=UPI001E336EEE)

HSP 1 Score: 69.3 bits (168), Expect = 1.550e-11
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 0
Query:    1 MSPQQALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFK 110
            M  ++A+  AR  G DL++I+      A + P PV +I+D+G F       RY+QQK  K+++ +   Q  LK++RF P TD +D   KLKHA +FL  G +VK ++QF+
Sbjct:   23 MRTEEAIDLARSMGLDLVEIS------ASSDP-PVTKIMDFGKF-------RYEQQKKAKEQRKKQAHQGELKEVRFRPRTDDHDYDFKLKHAREFLEKGNKVKAWVQFR 118          
BLAST of Ggra9181.t1 vs. uniprot
Match: A0A7V0VF76 (Translation initiation factor IF-3 n=2 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V0VF76_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 2.080e-11
Identity = 46/112 (41.07%), Postives = 66/112 (58.93%), Query Frame = 0
Query:    1 MSPQQALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQKKRYQQQKATKQRQMEHRKQSVL--KQIRFSPLTDRNDMRIKLKHAAQFLIDGYRVKVYMQFK 110
            MSP++ALR A  +G DL++I        +A P PV +I+DYG +  + QKK   Q+K          KQ+V+  K+IRF P TD +D   K +H  QFL+DGY+VK  + +K
Sbjct:   34 MSPREALRIAESKGLDLVEIV------PNAKP-PVCKIIDYGKYRYEVQKKEKNQRK----------KQAVIEVKEIRFHPNTDDHDFEFKARHCRQFLLDGYKVKATVIYK 128          
The following BLAST results are available for this feature:
BLAST of Ggra9181.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPC73.640e-4348.37Translation initiation factor IF-3 n=1 Tax=Gracila... [more]
R7Q6Y22.160e-3844.32Translation initiation factor IF3, mitochondrial n... [more]
A0A7V2F5291.200e-1242.86Translation initiation factor IF-3 n=2 Tax=Bacteri... [more]
A0A848Y1I52.860e-1240.57Translation initiation factor IF-3 n=1 Tax=Rhodoth... [more]
A0A3C1YQM65.810e-1237.23Translation initiation factor IF-3 n=1 Tax=Bactero... [more]
A0A259U3I21.040e-1139.62Translation initiation factor IF-3 n=2 Tax=Rubrico... [more]
A0A7V8BP921.050e-1139.62Translation initiation factor IF-3 n=1 Tax=bacteri... [more]
A0A800J8M11.150e-1139.09Translation initiation factor IF-3 n=1 Tax=Bactero... [more]
translation initiation factor IF-3 n=1 Tax=Rubrivirga sp. SAORIC476 TaxID=1961794 RepID=UPI001E336EEE1.550e-1139.09translation initiation factor IF-3 n=1 Tax=Rubrivi... [more]
A0A7V0VF762.080e-1141.07Translation initiation factor IF-3 n=2 Tax=Ignavib... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..187
NoneNo IPR availablePANTHERPTHR10938:SF0TRANSLATION INITIATION FACTOR IF-3, MITOCHONDRIALcoord: 1..124
IPR019815Translation initiation factor 3, C-terminalPFAMPF00707IF3_Ccoord: 72..136
e-value: 4.1E-11
score: 42.7
IPR036787Translation initiation factor 3 (IF-3), N-terminal domain superfamilyGENE3D3.10.20.80coord: 1..62
e-value: 5.1E-7
score: 31.7
IPR036788Translation initiation factor 3 (IF-3), C-terminal domain superfamilyGENE3D3.30.110.10coord: 66..145
e-value: 5.6E-12
score: 47.4
IPR036788Translation initiation factor 3 (IF-3), C-terminal domain superfamilySUPERFAMILY55200Translation initiation factor IF3, C-terminal domaincoord: 71..141
IPR001288Translation initiation factor 3PANTHERPTHR10938TRANSLATION INITIATION FACTOR IF-3coord: 1..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:315163..315726 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9181.t1Ggra9181.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 315163..315726 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9181.t1 ID=Ggra9181.t1|Name=Ggra9181.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MSPQQALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQK
KRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDG
YRVKVYMQFKRGQGGLKHSATQSLINAALALAPFGNVQGLPPSASIHDLF
KSDGEEQPQQRKPLELVLQPLPKTQREKLSTDALSVP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019815Translation_initiation_fac_3_C
IPR036787T_IF-3_N_sf
IPR036788T_IF-3_C_sf
IPR001288Translation_initiation_fac_3