Ggra916.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra916.t1
Unique Name	Ggra916.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	199

Homology

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BLAST of Ggra916.t1 vs. uniprot
Match: A0A1X6PID9 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PID9_PORUM)

HSP 1 Score: 77.4 bits (189), Expect = 6.720e-14
Identity = 58/184 (31.52%), Postives = 89/184 (48.37%), Query Frame = 0

Query:   19 ACSCLPTTLKGDFFAPQTQRVIKG---KVLFVTPGGSGPGASRFFFIKPEIVYKGCNTPSFIVA-TSPVQSATCGVNLQRGTSYILPLSDEQTPSINLCQFIRKFDSLSDEDKEFLSTRTVCCGGSCKCADISTPMVNCFRQPCSPPEQPPC-EEAAQCVDNYCGECFAEWFTDEGR-YACLPS 196
            A  C+P TL   ++      V+     +++  TP     G     F     VYKGC  P  +   +SP   ++C +  + G   +L LS ++  S++ C +     +L+  D  FL+ R+ C  G+C    ++   VNCF  PC   +  PC  +AA+CVDNYCG C+AEWF  +G    C P 
Sbjct:   38 AYKCIPPTLLTSYYRESVDAVVIATPQRLVSETPERRTYGLLGGPFPTNTTVYKGC--PRKLERFSSPGSLSSCSMTFELGVPVLLFLSADR--SVSPCDYTVPASALTPGDVAFLTRRSGC--GAC----VADNEVNCFVAPCQVSK--PCGPDAAKCVDNYCGGCYAEWFKADGTPLVCSPG 209

[Close]

BLAST of Ggra916.t1 vs. uniprot
Match: A0A3S3P3N9 (NTR domain-containing protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P3N9_9ACAR)

HSP 1 Score: 53.9 bits (128), Expect = 6.030e-6
Identity = 37/133 (27.82%), Postives = 65/133 (48.87%), Query Frame = 0

Query:    1 MKLLYGALLLACSLLVANACSCLPTTLKGDFFAPQTQRVIKGKVLFVTPGGSG--PGASRFFFIKPEIVYKGCN--TPSFIVATSPVQSATCGVNLQRGTSYILP--LSDEQTPSINLCQFIRKFDSLSDEDK 127
            MK+L   L+L  +   A +C+C+P T          Q++ +  ++     G     G ++++ I  + VYK     T    + T+P  SA CG+NL++GT Y++    S   T S  +C+++   DSL +  K
Sbjct:    1 MKILIIILVLQITFTCAFSCTCVPRT--------PLQKLCESSIILSGRIGKSRVDGLTKYYDINIDEVYKTPTNFTSKSAIVTTPKSSAACGINLRKGTRYLISGQKSALNTISTTICEYVSNLDSLDEARK 125

The following BLAST results are available for this feature:

BLAST of Ggra916.t1 vs. uniprot

BLAST of Ggra916.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A1X6PID9	6.720e-14	31.52	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]
A0A3S3P3N9	6.030e-6	27.82	NTR domain-containing protein n=1 Tax=Dinothrombiu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001820	Protease inhibitor I35 (TIMP)	PFAM	PF00965	TIMP	coord: 19..166 e-value: 1.6E-6 score: 28.0
IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	GENE3D	2.40.50.120		coord: 20..137 e-value: 1.1E-11 score: 46.6
IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	SUPERFAMILY	50242	TIMP-like	coord: 20..158
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..198
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..15

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:376653..377249 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra916.t1	Ggra916.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000049_pilon 376653..377249 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra916.t1 ID=Ggra916.t1|Name=Ggra916.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MKLLYGALLLACSLLVANACSCLPTTLKGDFFAPQTQRVIKGKVLFVTPG
GSGPGASRFFFIKPEIVYKGCNTPSFIVATSPVQSATCGVNLQRGTSYIL
PLSDEQTPSINLCQFIRKFDSLSDEDKEFLSTRTVCCGGSCKCADISTPM
VNCFRQPCSPPEQPPCEEAAQCVDNYCGECFAEWFTDEGRYACLPSPF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001820	TIMP
IPR008993	TIMP-like_OB-fold