Ggra9120.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9120.t1
Unique NameGgra9120.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1369
Homology
BLAST of Ggra9120.t1 vs. uniprot
Match: A0A2V3IGS5 (Spindle pole body component n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGS5_9FLOR)

HSP 1 Score: 568 bits (1463), Expect = 2.120e-185
Identity = 293/523 (56.02%), Postives = 369/523 (70.55%), Query Frame = 0
Query:   14 DATLPPPLLSVIQSLSDICTRASLLHDIPQALIISDSIRCHIINPLRALVHTNSSRSFDSLDSPTEALWTVDLAYSLIEKCLSHKDGFLPISRIWDVLHDTILSLSADSQPYTMLNYVWNDVITILRGQLFLLLVHARISDPRNEFFISPSSVVTKNLPSFISIEAAENIYSAYKATKCTISLSDQDVSCTIYPTDEFKQMLSDPISSELQIESAAMRWRRRACQSISQVFPFSIVSDRVGSLRKYLLHGDSSFWRFFFGLLSSASLPPLTSPESRAKSEKILNRILQTTITEYGVACPLFDLQVRENGEVIPTFTLSFVEGQVLASRAHVYCDLFSVTFSIRRAACDLQASYMELQAHRKRLAAEGQFRKSKWFVRLFELRRRMACFIDGYEWYTQAQVLQPSIDGLLLYVAGDRVKGSRSKPRPLFDVVVQEHEETMDRLLTQCFVGERLIMARLQAIVSACLSLGELIRGLPE----GTGRVSWEESRASKTVKLIDSIEKDFNRNYELLVRMLSGLEKR 532
            D T  PPL + ++SLSD C RASLLH++ QA ++S SIR H+++PLR       S SF    +P++A  TV+LA +LIE C+S+ D FLP+ R+ DVL D IL L   S  + +LN VWND+++ILR  LFLLLVHARISDP  EFFI  SSV T NLPSFIS+ AAENI  AYK TKCT+ LS Q+    IYPTDEF +M SDP+SS LQ ESAA+RWRR A   +S+VFPF+ + DR+  LRKYLLHG+ SFWRF+F LL S   P   S E R  +EKILNR LQTTITEYG+  PLF+LQV ENG+++PTFTLS+VE QVLAS+AHVYCDLFSVTFSIRRAAC+LQ++++EL + RK++ A  Q  K +  V++ ELRRRM CFID YE Y Q  VLQP  D +L Y+A    K S SK    F+ +V  HE+TMD L  QCFVGE+ +MAR+Q IVS+CL LGE++R L +      G+ +     +      I+ IE  F RN+ELLVR+LS +E+R
Sbjct:   10 DTTQLPPLATTLRSLSDTCVRASLLHNVRQASLLSGSIRKHVVHPLRKYAFATFSHSFVMGKAPSDASRTVNLARNLIESCMSN-DVFLPLGRVLDVLLDAILDLPEGSYSFIVLNRVWNDMVSILREHLFLLLVHARISDPNKEFFIDSSSVETTNLPSFISLRAAENILCAYKTTKCTLLLSGQETQLPIYPTDEFNRMFSDPVSSSLQAESAALRWRREASDRLSKVFPFNEIRDRITRLRKYLLHGEPSFWRFYFDLLRSTPFPSHASAEYRTHAEKILNRTLQTTITEYGINVPLFELQVGENGDLVPTFTLSYVESQVLASKAHVYCDLFSVTFSIRRAACELQSTFLELLSIRKQIVASRQLLKVEGLVKIVELRRRMGCFIDAYERYLQYHVLQPGFDKILHYIASTPDKRSGSKRESFFEAIVGHHEQTMDNLFAQCFVGEKRVMARVQGIVSSCLHLGEMVRKLSDVFTCSLGKETGSIWNSEDMALQIEQIEVGFERNFELLVRVLSNIERR 531          
BLAST of Ggra9120.t1 vs. uniprot
Match: R7Q7H6 (Spindle pole body component n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7H6_CHOCR)

HSP 1 Score: 289 bits (740), Expect = 1.140e-80
Identity = 183/560 (32.68%), Postives = 300/560 (53.57%), Query Frame = 0
Query:   11 LRCDATLPPPLLSVIQSLSDICTRASLLHDIPQALIISDSIRCHIINPLRALVHTNSSRSF--DSLDSPTEALWTVDLAYSLIEKCLSHKDGFLPISRIWDVLHDTILSLSADSQPYTMLNYVWNDVITILRGQLFLLLVHARISDPRNEFFISPSS---VVTKNLPSFISIEAAENIYSAYKATKCTISLSDQDVSCTIYPTD--EFKQMLSDPISSELQIESAAMRWRRRACQSISQVFPFSIVSDRVGSLRKYLLHGDSSFWRFFF-------GLLSSASLPPLTSPESRAKSEKILNRILQTTITEY-------GVACPLFD----LQVRENGEVIPTFTLSFVEGQVLASRAHVYCDLFSVTFSIRRAACDLQASY--MELQAHRKRLAAEGQFRKSKW--FVRLFELRRRMACFIDGYEWYTQAQVLQPSIDGLLLYVAGDRVKGSRSKP--RPLFDVVVQEHEETMDRLLTQCFVGERLIMARLQAIVSACLSLGELIRGLPEGTGRVSWEESRASKTVKLIDSIEKDFNRNYELLVRMLSGLEKRG---CVV 536
            L  D + P  L   +Q++SD+   + L  +   A  +++S+R H+I P R  ++ +  + +   +LDSP +        + L+ K L      L   +  D +  T+  L      + +L+ +WND++ +LR  +      A + DP ++FFIS  S   VV   LP FIS   A  +       KC I ++ +       P +     ++L++PIS+EL+IE+A+ RWR  A + +SQ+ PF  + +R+  LR+YLL GDS+FWR FF        LL+S  L     P  R   E+ ++ IL  T  ++           P +D    L V   G+++P FTL F E +VLAS+A VYCD+F++ F++RR  C+L+ +Y  ++L  H+ + ++  + R+ +    VR  ELRRRMA F+ G+EWY Q +VLQP I+ LL  +     + ++  P  +P FDV+   HE  MD + +QCFVG+  I ARL  I ++C SL + ++GL       + +++  + T++   + E+ F+RN  LLVR+LS + + G   CV+
Sbjct:   77 LSSDPSAPVSLFQALQTISDLLNASVLKTEAIFAFALNESVRRHLITPCRKRLYQSCQQPYYQPALDSPYDERAAAACVHQLLCKILLSAPP-LSFPQALDEIQRTVTPLPPTDLAFQVLSKIWNDLVVLLRSHIHQWFTAAIVEDPLHQFFISEESEPAVVPARLPQFISPAVANRLLFVGNVRKCRIVIAKERREPLDNPGNIGALGEILTNPISAELEIEAASFRWREEAAERLSQMLPFRRIRNRIILLRQYLLLGDSAFWRSFFDELRAKPSLLTSRDL----EPRERQHVERSISEILSYTFDDFVNENAALAEKSPHWDSILKLHVTAAGDIVPQFTLGFAESRVLASKASVYCDVFAIAFNVRRVGCELRDTYANIKLLEHQLKKSSSLKIRRERTACLVRTRELRRRMAIFLGGFEWYLQVEVLQPKINRLLTLLDNHLRENTQPSPPRKPFFDVIYSTHEALMDDIFSQCFVGQSQINARLNGIFASCFSLSDFVQGLTVD----ALQQNSFTDTLR---AFEQSFSRNVGLLVRLLSHMRQNGNDECVI 624          
BLAST of Ggra9120.t1 vs. uniprot
Match: R7Q8R8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8R8_CHOCR)

HSP 1 Score: 180 bits (456), Expect = 9.380e-42
Identity = 113/230 (49.13%), Postives = 141/230 (61.30%), Query Frame = 0
Query:  555 EYQTIASKLLAREDEREEMALQVAEKEKRDLEAEFNDSPVERQAGSSKGHESRPNASKDLTKLLDTLTPIQRYALRVLERLNRA-HSFNHTHC-----SEALPSVSLSQGRESVFGSNPXXXXXXXSGEDKKRSESE-GTVEDDTETLLYEIDVTDEGQASYLKALTDADADINLYLPLRDGGPEELKFSTVVHGTAAAGLECAEDAAFFPHAYNRMSRTMYATRRQKEK 777
            +YQ + SKLLA EDERE +A   AE+E++ L AEF++S      G     E R  +S D   +  +L P+QRYALR++E        F+         +E   S  L + ++    SN        + E +  S  E G  ED+ +   YE+D++  G  SYLK LTD DADI +YLPLRDGGPEELK STVV GTAAAGLECAEDAAFFPHAYNRMSRT+YAT RQKEK
Sbjct: 1469 QYQEVTSKLLAAEDERERLAAATAEQEEQRLRAEFDESVPTTDDGDRVKRE-RAASSDDRDVVESSLNPVQRYALRLVESWQSGIGDFDEPETVVDWEAEFTVSKMLERRKQGHLASNMQSDGITKAAELQDVSTPESGDQEDEDDPAFYEVDISANGHRSYLKGLTDTDADIKMYLPLRDGGPEELKISTVVSGTAAAGLECAEDAAFFPHAYNRMSRTIYATLRQKEK 1697          
BLAST of Ggra9120.t1 vs. uniprot
Match: M2Y2M9 (SWR1 complex protein, SNF2 family DNA-dependent ATPase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y2M9_GALSU)

HSP 1 Score: 86.7 bits (213), Expect = 3.230e-13
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 0
Query:  689 EDDTETLLYEIDVTDEGQASYLKALTDADADINLYLPLRDGGPEELKFSTVVHGTAAAGLECAEDAAFFPHAYNRMSRTMYATRRQKEKGLE 780
            ED    L Y   + ++ ++SY +A+ ++   + +YLPL DGG EE+  STVV  TAA G+E AEDAAFFP+AY+R+SRT  ATR QK   LE
Sbjct: 1286 EDSPTELFYTRMMDEDSRSSYSRAIENSGTCLKIYLPLHDGGKEEMTMSTVVDKTAAIGIESAEDAAFFPYAYSRLSRTSDATRLQKANTLE 1377          
The following BLAST results are available for this feature:
BLAST of Ggra9120.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IGS52.120e-18556.02Spindle pole body component n=1 Tax=Gracilariopsis... [more]
R7Q7H61.140e-8032.68Spindle pole body component n=1 Tax=Chondrus crisp... [more]
R7Q8R89.380e-4249.13Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2Y2M93.230e-1350.00SWR1 complex protein, SNF2 family DNA-dependent AT... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 772..792
NoneNo IPR availableCOILSCoilCoilcoord: 568..588
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 860..875
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 956..975
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 598..612
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1135..1187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 916..936
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 812..835
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1007..1030
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1007..1187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1041..1111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 790..876
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 578..614
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 661..690
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 661..675
IPR040457Gamma tubulin complex component, C-terminalPFAMPF04130GCP_C_terminalcoord: 344..532
e-value: 4.4E-15
score: 55.9
IPR042241Gamma-tubulin complex component, C-terminal domain superfamilyGENE3D1.20.120.1900coord: 250..544
e-value: 5.0E-22
score: 80.4
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 59..524

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:34113..44158 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9120.t1Ggra9120.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 34113..44158 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9120.t1 ID=Ggra9120.t1|Name=Ggra9120.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1369bp
MSTVIEEKPRLRCDATLPPPLLSVIQSLSDICTRASLLHDIPQALIISDS
IRCHIINPLRALVHTNSSRSFDSLDSPTEALWTVDLAYSLIEKCLSHKDG
FLPISRIWDVLHDTILSLSADSQPYTMLNYVWNDVITILRGQLFLLLVHA
RISDPRNEFFISPSSVVTKNLPSFISIEAAENIYSAYKATKCTISLSDQD
VSCTIYPTDEFKQMLSDPISSELQIESAAMRWRRRACQSISQVFPFSIVS
DRVGSLRKYLLHGDSSFWRFFFGLLSSASLPPLTSPESRAKSEKILNRIL
QTTITEYGVACPLFDLQVRENGEVIPTFTLSFVEGQVLASRAHVYCDLFS
VTFSIRRAACDLQASYMELQAHRKRLAAEGQFRKSKWFVRLFELRRRMAC
FIDGYEWYTQAQVLQPSIDGLLLYVAGDRVKGSRSKPRPLFDVVVQEHEE
TMDRLLTQCFVGERLIMARLQAIVSACLSLGELIRGLPEGTGRVSWEESR
ASKTVKLIDSIEKDFNRNYELLVRMLSGLEKRGCVVLKVDDKLVVVTSVD
KDFTEYQTIASKLLAREDEREEMALQVAEKEKRDLEAEFNDSPVERQAGS
SKGHESRPNASKDLTKLLDTLTPIQRYALRVLERLNRAHSFNHTHCSEAL
PSVSLSQGRESVFGSNPSVFGSNPSGEDKKRSESEGTVEDDTETLLYEID
VTDEGQASYLKALTDADADINLYLPLRDGGPEELKFSTVVHGTAAAGLEC
AEDAAFFPHAYNRMSRTMYATRRQKEKGLENLRKRKAEIEVKRKHEISSS
VSNPTPSPKVHSSDACRDEARRSVQLERVKTSKGKCDTSRYPSPNVHSKK
ARVDHSLKSRGSVVVTSSGTGSEPHHSTMGGLFKNKPKKNARRFTIPGMK
SSIAFYGGNISNEHQGDVKNGPLLPKSTTLESDTRQKYQRAFQSAFTASR
AKPVVPGGTGYSSSEMHPSHQKLLSEAASKMKGIVRPEILPPITEILHLF
DVPDHHKPGFKSHETRQGQSKRKPFMFAPRDDPRRGNGFTGAVNGSHQEQ
PSSVLKGPEQQPKGTDQTSVQKTAIKGPKVQSTGTSQRPSVQNRTTGPSR
NSATPKSKTVDLKNRGQIGAHRLQQAGNLPPVYNAPSRKVSSSSAGKKTI
YHQPQQGTSAQNLPSTGQKDKLGQTGTSGQSVSMKHGAATSKIQTAAKTA
AKYSNVATSPSVGKLASGGGQVSNGPLGKSSAAVVHSMGSTSIPQNGDSR
LYPIESHAVLSSSIGKIITYGSDRRDRPKMMHTYMPSSMALTRDAGANAK
ASLGGAVTSRTGAGRGYSVKTSNPAATGRSMLAEHGKRAVQANGNPGVGR
GVLRGGIAKTVSRGAVNW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040457GCP_C
IPR042241GCP_C_sf
IPR007259GCP