Ggra9097.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9097.t1
Unique NameGgra9097.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length244
Homology
BLAST of Ggra9097.t1 vs. uniprot
Match: A0A2V3IFP7 (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFP7_9FLOR)

HSP 1 Score: 288 bits (737), Expect = 1.720e-95
Identity = 145/218 (66.51%), Postives = 184/218 (84.40%), Query Frame = 0
Query:    1 MSNWDDEDEWDADPAPAVPTIPTPSTFSNDAPLGNWDDXXQSEEEEPQLKKPSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKELDDMDAIQRKVRQQQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEKRDEFKKSKGFKKKTNK 218
            M++WDD+D+WDA P PA      P+  ++   LGNWDD  QS++E+ +LKK  APMKPSKLRAKALKEKE+Q+RQRE+++++ARQKELD+MDA+QRK+RQQQIVEEADLEN K+LFMV   S+ M PP++PTL++FKP SDAD+SKFARM+G+RCA LNDNP+R+ R+M F+KE+LRV V  LG DDTK LSTF+GVLSNEKRDEFK++KG KKK+NK
Sbjct:    1 MASWDDDDDWDAHPPPA------PTFHASSNALGNWDDEDQSDDEQIELKKAPAPMKPSKLRAKALKEKEDQQRQREVQRVLARQKELDEMDAVQRKIRQQQIVEEADLENAKELFMVAAPSDAMAPPSQPTLDDFKPQSDADFSKFARMMGDRCAALNDNPKRSARFMHFIKEMLRVAVKDLGPDDTKQLSTFVGVLSNEKRDEFKRAKGIKKKSNK 212          
BLAST of Ggra9097.t1 vs. uniprot
Match: R7Q2T7 (Translation initiation factor eIF3, subunit J n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2T7_CHOCR)

HSP 1 Score: 230 bits (587), Expect = 1.290e-72
Identity = 130/250 (52.00%), Postives = 181/250 (72.40%), Query Frame = 0
Query:    1 MSNWDDEDEWDADPAPA-VPTIPTPSTFSNDAPLGNWDDXXQSEEEEP-QLKKPSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKELDDMDAIQRKVRQQQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELND-----NPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEKRDEFKKSKGFKKKTNKKSNVRVDKMTDMRYDVYDDVGDEFM 243
            MSNWDDED W+AD  P+  P++P P+       +G    XX  EEEE   LKKPSAPMKPSK RA AL       ++    + +AR+KE++++ A++RK+RQQ++VE+ADLEN KDLFM G  + GM+PPAEPT++ FKPV++ DY+K+A M+ E C +L++       ++ G Y+ FVK+++R +   L  +DTKDLSTF+G+LSNEKRD+FKKSKG+KKKT+KK++VRVD+  DMR DV+DD  D+FM
Sbjct:    1 MSNWDDED-WEADSGPSPAPSLPVPAAGG----MGXXXXXXLPEEEEDISLKKPSAPMKPSKARALALXXXXXXXQRLATARAIAREKEMEELSAVERKMRQQKLVEQADLENVKDLFMEGSSNGGMRPPAEPTIDTFKPVTEEDYNKYAAMISEHCVKLSNINSPTKKKQMGLYVSFVKQLMRGLAQELSQEDTKDLSTFMGLLSNEKRDQFKKSKGYKKKTSKKTHVRVDREDDMRGDVFDDFADDFM 245          
BLAST of Ggra9097.t1 vs. uniprot
Match: A0A5J4Z7B4 (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7B4_PORPP)

HSP 1 Score: 101 bits (252), Expect = 6.770e-22
Identity = 70/179 (39.11%), Postives = 106/179 (59.22%), Query Frame = 0
Query:   53 SAPMKPSKLRAKALKEKEEQERQREIEKIMARQKELDDMDAIQRKVRQQQIVEEADLENTKDLFM--VGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEKRDEFKKSKGFKKKTNKKSNVRVDKMTD 229
            S P    +L  + +K +E +E ++  +K  A +KEL+ +   +R+ R Q++VE+ADLEN KDLFM    D  E   P  EPTL+N    +  D  KF ++L E+ + L  +PRR  RYM+ +K +LR     L +DD KDL++   VL+NEK      ++G KKKT KK+++ VD+  D
Sbjct:  119 SKPKSRKQLLEEKIKLREAEEARKARDKADALEKELEGLSVAERRARMQEMVEKADLENAKDLFMDAAPDDDEDADPD-EPTLDNIALKTSKDDEKFVKLLVEKISPLY-HPRRPERYMNVLKSILREGTGELDADDVKDLASTCNVLANEKLKAKSAAQGKKKKTAKKTHIMVDRDDD 295          
BLAST of Ggra9097.t1 vs. uniprot
Match: A0A7S0G7Z8 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7Z8_9RHOD)

HSP 1 Score: 93.2 bits (230), Expect = 1.990e-19
Identity = 80/250 (32.00%), Postives = 129/250 (51.60%), Query Frame = 0
Query:    3 NWDDEDEWDADPAPAVPTIPTPSTFSNDAPLGNWDDXXQSEEEEPQLKKPSAPMKPSKLRAKALKEKEEQER-----QREIEKIMARQKELDDMDAI---QRKVRQQQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEKRDEFKKSKGFKKKTNKKSNVRVDKMTDMRYDVY-DDVGDEFM 243
            NW+DE+E                 F +     NWDD     E        + P +PS++ A+  KEK+ Q +     +RE +   A++K+  DM+A+   ++K+ +Q++VEEAD +N KD+FM GD S+      + TL+   P    +  K+  +L  +   + D+  R+ R + F K+VLR + A L  DDTK+LS+ + V+SNEK    K  +  K K  KK+ V++++   +  D Y DD  D FM
Sbjct:    2 NWEDEEE----------------EFEHKDVKANWDD-----EXXXXXXXXAPPAEPSQMSARKKKEKDLQAKIKEREEREAQYRAAQRKQEIDMEALTDAEKKLARQKLVEEADFQNAKDMFMHGDSSDVKAETGKETLDGMSPKGSKELKKYCELLVPKLNMVMDSNVRSHR-LQFFKDVLRGITADLSVDDTKELSSHLNVISNEKIQVNKGPQAKKGKAKKKTTVKMERSQVL--DAYVDDELDGFM 227          
BLAST of Ggra9097.t1 vs. uniprot
Match: A9TBZ8 (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TBZ8_PHYPA)

HSP 1 Score: 79.0 bits (193), Expect = 3.350e-14
Identity = 73/238 (30.67%), Postives = 121/238 (50.84%), Query Frame = 0
Query:    7 EDEWDA-DPAPAVPTIPTPSTFSNDAPLGNWDDXXQSEEEEPQLKKPSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKELDDMDAIQRKVRQQQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEKRDEFKKSKGFKKKTN-KKSNVRVDKMTD-----MRYDVYDD 237
            +D+WDA D  P  P +   +T         WDD  +  EEEP  +KP     P   + KA K+KE+ ++    E +++        D +  K+RQQ++VEEAD +NT +LF       G K     +LE+F P S+ D+ ++A +L ++         ++  YM  ++ ++R  VA + + D K++++ + V++NEK    + +   KKKT  KK  + VDK  D     + YD  DD
Sbjct:    2 DDDWDAEDFTPLPPVLAKEATQVK----SQWDD--EDAEEEPVEEKPKVVAVP---KPKAEKKKEKPKKATSDEGVLS--------DPLAEKLRQQRLVEEADYQNTSELF-------GGKTRGGRSLEDFIPKSEDDFLEYAELLAQKIRPFE----KSFHYMTLLRAIMRHSVANMKASDAKEIASSMTVIANEKLKAERDATAGKKKTGAKKKQLIVDKPDDDGMGGVSYDAVDD 211          
BLAST of Ggra9097.t1 vs. uniprot
Match: A9S6K9 (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S6K9_PHYPA)

HSP 1 Score: 72.8 bits (177), Expect = 5.850e-12
Identity = 71/228 (31.14%), Postives = 106/228 (46.49%), Query Frame = 0
Query:    7 EDEWDAD---PAPAVPTIPTPSTFSNDAPLGNWDDXXQSEEEEPQLK-KPSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKELDDMDAIQRKVRQQQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEKRDEFKKSKGFKKKTN-KKSNVRVDKMTD 229
            +DEWDAD   P P V     P T S       WDD    +E + + K +P    KP K   K + +                  E D  D I  K+RQQ++VEEAD +NT +LF       G K     +LE F P S+ D+  +A ++ ++         ++  YM  ++ +LR  VA + + D K+ ++ + V++NEK    K +   KKKT  KK  + VDK  D
Sbjct:    2 DDEWDADDFVPLPPVSAKDEPKTTSQ------WDDEDVEDELKEEAKPEPVIAPKPKKKFKKNIDD------------------EGDLSDPIAEKLRQQRLVEEADYQNTSELF-------GDKSRTGHSLEYFIPKSEEDFLDYAELIAQKIRPFE----KSFHYMTLLRALLRHSVAAVKASDAKEFASSMTVIANEKLKAEKDATAGKKKTGAKKKQLMVDKPDD 194          
BLAST of Ggra9097.t1 vs. uniprot
Match: A0A388LWA2 (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LWA2_CHABU)

HSP 1 Score: 67.0 bits (162), Expect = 9.030e-10
Identity = 45/142 (31.69%), Postives = 77/142 (54.23%), Query Frame = 0
Query:   91 MDAIQRKVRQQQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEKRDEFKKSKGFKKKTNKKSNVRVDKMTDMRY 232
            +D I  K+RQQ++VEEADL  +KDLF    G E      E +L++F P S+ ++ ++A ++  +    +    ++  Y+  +K ++R+    L + DTK+L   + V++NEK    K S   KK   KK  + ++K  D  Y
Sbjct:   80 LDPIAEKLRQQRLVEEADLMVSKDLFKQS-GEE------EKSLDDFVPKSEDEFKEYAALVAAKLTPFD----KSFHYLTMLKAIIRLASVSLKAADTKELGAALSVITNEKVKAEKDSAAKKKAGPKKKQLHIEKADDDDY 210          
BLAST of Ggra9097.t1 vs. uniprot
Match: A0A2Z7CNF3 (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CNF3_9LAMI)

HSP 1 Score: 63.9 bits (154), Expect = 2.550e-8
Identity = 37/126 (29.37%), Postives = 74/126 (58.73%), Query Frame = 0
Query:   91 MDAIQRKVRQQQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEKRDEFKKSKGFKKKT 216
            +D + +K+RQQ++VEEAD ++T +LF         K   E TL++F P +++D++++A ++  +         ++  Y+  +K V+R+ +  L   D K++++ +  ++NEK    K++ G KKKT
Sbjct:  170 LDPVDKKLRQQRLVEEADYKSTAELFA--------KKGEEKTLDSFIPKTESDFAEYAELIAYKLRPYE----KSYHYIGLLKAVMRLSLTSLRGADAKEVASSVTAVANEKIRMEKEASGGKKKT 283          
BLAST of Ggra9097.t1 vs. uniprot
Match: A9SEC7 (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SEC7_PHYPA)

HSP 1 Score: 58.9 bits (141), Expect = 8.760e-8
Identity = 30/100 (30.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:  103 IVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEK 202
            +VEEAD +NT +LF       G K    P+ E+F P S+ D+ ++A +L ++         ++  YM  ++ ++R+ VA + + D K++++ + V++NEK
Sbjct:    2 LVEEADFQNTSELF-------GGKLKGGPSFEDFIPTSEDDFLEYAELLAQKIRPFE----KSFHYMTLLRAIMRLSVANMKASDAKEVASSMTVIANEK 90          
BLAST of Ggra9097.t1 vs. uniprot
Match: A0A7I4DE97 (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DE97_PHYPA)

HSP 1 Score: 60.1 bits (144), Expect = 1.690e-7
Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = 0
Query:   92 DAIQRKVRQQQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARMLGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSNEKRDEFKKSKGFKKKT 216
            D +  K+RQQ+ VEEAD +NT +LF       G+K     +L +F P S+ D  ++A M+  +         R+  YM  ++ +LR  VA +   D K++++ +  + NEK    +K+   KKKT
Sbjct:   52 DPLVEKLRQQRSVEEADYQNTSELF-------GIKSRGGVSLNDFIPKSEDDILEYAEMISRKIRPFE----RSFHYMTLLRALLRHSVASMKGSDAKEVASSMTAIVNEKLKAERKAAAGKKKT 165          
The following BLAST results are available for this feature:
BLAST of Ggra9097.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2V3IFP71.720e-9566.51Eukaryotic translation initiation factor 3 subunit... [more]
R7Q2T71.290e-7252.00Translation initiation factor eIF3, subunit J n=1 ... [more]
A0A5J4Z7B46.770e-2239.11Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S0G7Z81.990e-1932.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A9TBZ83.350e-1430.67Eukaryotic translation initiation factor 3 subunit... [more]
A9S6K95.850e-1231.14Eukaryotic translation initiation factor 3 subunit... [more]
A0A388LWA29.030e-1031.69Eukaryotic translation initiation factor 3 subunit... [more]
A0A2Z7CNF32.550e-829.37Eukaryotic translation initiation factor 3 subunit... [more]
A9SEC78.760e-830.00Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A0A7I4DE971.690e-732.00Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..76
IPR023194Eukaryotic translation initiation factor 3-like domain superfamilyGENE3D1.10.246.60Eukaryotic translation initiation factor 3 like domainscoord: 131..211
e-value: 2.1E-17
score: 65.3
IPR013906Eukaryotic translation initiation factor 3 subunit JPFAMPF08597eIF3_subunitcoord: 1..243
e-value: 5.6E-36
score: 124.7
IPR013906Eukaryotic translation initiation factor 3 subunit JPANTHERPTHR21681EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Jcoord: 2..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:181540..182271 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9097.t1Ggra9097.t1Gracilaria gracilis GNS1m malemRNAtig00000176_pilon 181540..182271 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9097.t1 ID=Ggra9097.t1|Name=Ggra9097.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=244bp
MSNWDDEDEWDADPAPAVPTIPTPSTFSNDAPLGNWDDEDQSEEEEPQLK
KPSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKELDDMDAIQRKVRQ
QQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARM
LGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSN
EKRDEFKKSKGFKKKTNKKSNVRVDKMTDMRYDVYDDVGDEFM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023194eIF3-like_dom_sf
IPR013906eIF3j