Ggra9097.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9097.t1
Unique NameGgra9097.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:181540..182271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog981085.XP_010093104.1
PFAMseIF3_subunit
Max annot lvl35493|Streptophyta
KEGG koko:K03245
KEGG Pathwayko03013,map03013
Evalue3.2e-15
EggNOG OGsKOG4813@1|root,KOG4813@2759|Eukaryota,37T5P@33090|Viridiplantae,3GFQB@35493|Streptophyta,4JJKE@91835|fabids
Descriptioncomponent of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
COG categoryJ
BRITEko00000,ko00001,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9097Ggra9097Gracilaria gracilis GNS1m malegenetig00000176_pilon 181540..182271 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9097.t1.start1Ggra9097.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 181540..181542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9097.t1.CDS1Ggra9097.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 181540..182271 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9097.t1.exon1Ggra9097.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 181540..182271 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9097.t1.stop1Ggra9097.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 182269..182271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9097.t1Ggra9097.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 181540..182271 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9097.t1 ID=Ggra9097.t1|Name=Ggra9097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=244bp
MSNWDDEDEWDADPAPAVPTIPTPSTFSNDAPLGNWDDEDQSEEEEPQLK
KPSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKELDDMDAIQRKVRQ
QQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARM
LGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSN
EKRDEFKKSKGFKKKTNKKSNVRVDKMTDMRYDVYDDVGDEFM*
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spliced messenger RNA

>Ggra9097.t1 ID=Ggra9097.t1|Name=Ggra9097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000176_pilon:181540..182271+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAACTGGGATGACGAAGACGAGTGGGACGCAGACCCAGCTCCCGC
AGTCCCCACAATACCGACCCCATCTACGTTTAGTAATGATGCACCGCTTG
GTAATTGGGATGATGAGGACCAATCCGAAGAAGAAGAGCCGCAATTGAAG
AAGCCTTCCGCCCCCATGAAACCCTCTAAACTTCGCGCAAAGGCACTCAA
AGAGAAGGAAGAACAGGAACGACAACGCGAGATTGAGAAGATTATGGCGC
GTCAAAAAGAGCTGGATGACATGGATGCGATACAAAGAAAGGTCCGTCAG
CAGCAAATCGTAGAAGAAGCAGACCTTGAAAACACCAAAGACCTCTTCAT
GGTTGGAGATGGTTCAGAAGGAATGAAGCCACCTGCAGAACCCACACTGG
AAAACTTCAAGCCTGTTTCAGATGCCGATTACTCCAAGTTTGCGCGAATG
CTGGGCGAGCGATGCGCAGAGCTGAATGACAATCCCAGAAGAACGGGACG
CTACATGGATTTTGTCAAGGAGGTATTGCGAGTGGTAGTGGCAGGTCTCG
GATCAGATGATACAAAAGATCTTTCCACTTTTATTGGTGTACTAAGCAAC
GAAAAGAGAGACGAATTCAAGAAATCGAAAGGCTTCAAGAAGAAGACCAA
CAAGAAATCGAACGTGCGAGTAGACAAGATGACCGACATGCGCTATGACG
TCTACGACGATGTCGGTGACGAGTTTATGTAA
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protein sequence of Ggra9097.t1

>Ggra9097.t1 ID=Ggra9097.t1|Name=Ggra9097.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=244bp
MSNWDDEDEWDADPAPAVPTIPTPSTFSNDAPLGNWDDEDQSEEEEPQLK
KPSAPMKPSKLRAKALKEKEEQERQREIEKIMARQKELDDMDAIQRKVRQ
QQIVEEADLENTKDLFMVGDGSEGMKPPAEPTLENFKPVSDADYSKFARM
LGERCAELNDNPRRTGRYMDFVKEVLRVVVAGLGSDDTKDLSTFIGVLSN
EKRDEFKKSKGFKKKTNKKSNVRVDKMTDMRYDVYDDVGDEFM*
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mRNA from alignment at tig00000176_pilon:181540..182271+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9097.t1 ID=Ggra9097.t1|Name=Ggra9097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000176_pilon:181540..182271+ (Gracilaria gracilis GNS1m male)
ATGTCTAACTGGGATGACGAAGACGAGTGGGACGCAGACCCAGCTCCCGC
AGTCCCCACAATACCGACCCCATCTACGTTTAGTAATGATGCACCGCTTG
GTAATTGGGATGATGAGGACCAATCCGAAGAAGAAGAGCCGCAATTGAAG
AAGCCTTCCGCCCCCATGAAACCCTCTAAACTTCGCGCAAAGGCACTCAA
AGAGAAGGAAGAACAGGAACGACAACGCGAGATTGAGAAGATTATGGCGC
GTCAAAAAGAGCTGGATGACATGGATGCGATACAAAGAAAGGTCCGTCAG
CAGCAAATCGTAGAAGAAGCAGACCTTGAAAACACCAAAGACCTCTTCAT
GGTTGGAGATGGTTCAGAAGGAATGAAGCCACCTGCAGAACCCACACTGG
AAAACTTCAAGCCTGTTTCAGATGCCGATTACTCCAAGTTTGCGCGAATG
CTGGGCGAGCGATGCGCAGAGCTGAATGACAATCCCAGAAGAACGGGACG
CTACATGGATTTTGTCAAGGAGGTATTGCGAGTGGTAGTGGCAGGTCTCG
GATCAGATGATACAAAAGATCTTTCCACTTTTATTGGTGTACTAAGCAAC
GAAAAGAGAGACGAATTCAAGAAATCGAAAGGCTTCAAGAAGAAGACCAA
CAAGAAATCGAACGTGCGAGTAGACAAGATGACCGACATGCGCTATGACG
TCTACGACGATGTCGGTGACGAGTTTATGTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:181540..182271+

>Ggra9097.t1 ID=Ggra9097.t1|Name=Ggra9097.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=732bp|location=Sequence derived from alignment at tig00000176_pilon:181540..182271+ (Gracilaria gracilis GNS1m male)
ATGTCTAACTGGGATGACGAAGACGAGTGGGACGCAGACCCAGCTCCCGC
AGTCCCCACAATACCGACCCCATCTACGTTTAGTAATGATGCACCGCTTG
GTAATTGGGATGATGAGGACCAATCCGAAGAAGAAGAGCCGCAATTGAAG
AAGCCTTCCGCCCCCATGAAACCCTCTAAACTTCGCGCAAAGGCACTCAA
AGAGAAGGAAGAACAGGAACGACAACGCGAGATTGAGAAGATTATGGCGC
GTCAAAAAGAGCTGGATGACATGGATGCGATACAAAGAAAGGTCCGTCAG
CAGCAAATCGTAGAAGAAGCAGACCTTGAAAACACCAAAGACCTCTTCAT
GGTTGGAGATGGTTCAGAAGGAATGAAGCCACCTGCAGAACCCACACTGG
AAAACTTCAAGCCTGTTTCAGATGCCGATTACTCCAAGTTTGCGCGAATG
CTGGGCGAGCGATGCGCAGAGCTGAATGACAATCCCAGAAGAACGGGACG
CTACATGGATTTTGTCAAGGAGGTATTGCGAGTGGTAGTGGCAGGTCTCG
GATCAGATGATACAAAAGATCTTTCCACTTTTATTGGTGTACTAAGCAAC
GAAAAGAGAGACGAATTCAAGAAATCGAAAGGCTTCAAGAAGAAGACCAA
CAAGAAATCGAACGTGCGAGTAGACAAGATGACCGACATGCGCTATGACG
TCTACGACGATGTCGGTGACGAGTTTATGTAA
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