Ggra9095.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9095.t1
Unique NameGgra9095.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Homology
BLAST of Ggra9095.t1 vs. uniprot
Match: R7Q4E5 (TAFII28 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4E5_CHOCR)

HSP 1 Score: 149 bits (375), Expect = 9.500e-42
Identity = 85/150 (56.67%), Postives = 108/150 (72.00%), Query Frame = 0
Query:   45 ENKKDGEGTGPP-LKDAVKNTSESAPAPEEPEDEDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKASEQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPTTSNRS 193
            E KKD +  G    KDA    SE    P E  +E+APLDL     +E  +V+ LT  Q RRYEQYRRSDLK+ KV+KVL + NP +QKAS+ Y+IA+KGL KLFVGDVVETAL+V+ + G+ GAL P+ +REAYRRLRR+G VP+T++RS
Sbjct:   59 EEKKDSQTRGSTHAKDAK---SEQKMEPGESGEEEAPLDLASFARYEHGEVAKLTAVQQRRYEQYRRSDLKNPKVKKVLVSYNPTLQKASDLYIIAVKGLAKLFVGDVVETALDVKNQMGDKGALQPKHLREAYRRLRRSGVVPSTNDRS 205          
BLAST of Ggra9095.t1 vs. uniprot
Match: A0A7S3ENX1 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENX1_9RHOD)

HSP 1 Score: 106 bits (265), Expect = 2.060e-25
Identity = 56/112 (50.00%), Postives = 80/112 (71.43%), Query Frame = 0
Query:   77 EDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALN--PMMQKASEQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAV 186
            +D   DL ++ E +  QVS L P Q+ RYE YR+SDLK  K++K+LT+ N  P+    S+ ++IA+KGL K+FVG+VVE AL+++KE G+ GAL P+ +REAYRR+ R G V
Sbjct:   70 DDKDFDLQRLMEMQSRQVSQLGPEQMNRYEFYRKSDLKQHKIKKLLTSRNLIPVTIPPSDPFIIAVKGLAKVFVGEVVENALDIQKEWGDAGALHPKHLREAYRRMDRDGNV 181          
BLAST of Ggra9095.t1 vs. uniprot
Match: A0A7S1XG47 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XG47_9RHOD)

HSP 1 Score: 105 bits (261), Expect = 7.910e-25
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 0
Query:   81 LDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKA--SEQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPTTSNRSEGSL 197
             DL K ++ E+  V+  + AQ+RRYE Y+RSDLK  K++K+L A+NP       S+  +IAIKGL KLFVG+VVE ALEV +ER + G L P+ IREAYRR+RR  +  T   R   S+
Sbjct:   75 FDLEKAQKHEYEVVNTFSEAQMRRYESYKRSDLKKEKMKKILMAINPAFGTTAPSDPVMIAIKGLAKLFVGEVVEAALEVMRERDQDGPLLPQHIREAYRRIRRNPSSITAGIRKPDSI 193          
BLAST of Ggra9095.t1 vs. uniprot
Match: A0A1X6NJQ9 (TAFII28 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJQ9_PORUM)

HSP 1 Score: 98.2 bits (243), Expect = 3.740e-23
Identity = 60/108 (55.56%), Postives = 73/108 (67.59%), Query Frame = 0
Query:  102 LRRYEQYRRSDLKSSKVRKVLTALNPMMQKA--SEQYVIAIKGLGKLFVGDVVETALEV------RKERGETGALTP----RQIREAYRRLRRAGAVPTTSNRSEGSL 197
            +RRYE YRRSDLK  +V+KVLT ++P+  K   S+ Y+IA+KGL KLFVGDVVETA  V      RKE G+TG   P    + +REAYRRLRR GA PTT  R+   L
Sbjct:    1 MRRYEAYRRSDLKKERVKKVLTGISPVFDKMAPSDAYIIAVKGLAKLFVGDVVETAATVAAEWGDRKE-GDTGLNAPPLQTKHLREAYRRLRRDGAFPTTDRRAGSFL 107          
BLAST of Ggra9095.t1 vs. uniprot
Match: M2XYV0 (Transcription initiation factor TFIID subunit D9 isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYV0_GALSU)

HSP 1 Score: 95.1 bits (235), Expect = 2.880e-21
Identity = 51/115 (44.35%), Postives = 77/115 (66.96%), Query Frame = 0
Query:   75 EDEDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPM--MQKASEQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVP 187
            ++ED  + L K RE E    SNL      R+E YR+ DL  +KV+K+++ +NP   M +    ++IA+KGLGKL+ G++VE A+++R ERGE GA+ P  +REAYRR+++AG  P
Sbjct:   46 DEEDEQVRLWKQREREI--FSNLNEDDQERFEYYRQGDLDKNKVKKLVSTVNPALSMMQPDNPFIIAVKGLGKLYAGELVEMAVDIRNERGEQGAVRPVHLREAYRRMQKAGKTP 158          
BLAST of Ggra9095.t1 vs. uniprot
Match: transcription initiation factor TFIID subunit 11 isoform X2 n=1 Tax=Drosophila arizonae TaxID=7263 RepID=UPI00083F0C90 (transcription initiation factor TFIID subunit 11 isoform X2 n=1 Tax=Drosophila arizonae TaxID=7263 RepID=UPI00083F0C90)

HSP 1 Score: 82.4 bits (202), Expect = 4.460e-17
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKASEQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVP 187
            +SN T  QL RYE YRRS    + V++++  +       S+  VIA+ G+ K+FVG+VVE AL+V +++GE+GAL P+ IREA RRLRR G +P
Sbjct:    1 MSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGC--SVSQNVVIAMSGIAKVFVGEVVEEALDVMEQQGESGALQPKFIREAVRRLRRKGRMP 92          
BLAST of Ggra9095.t1 vs. uniprot
Match: B7QLL3 (Transcription initiation factor TFII-D subunit, putative n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7QLL3_IXOSC)

HSP 1 Score: 83.2 bits (204), Expect = 5.640e-17
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKASEQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVP 187
            VSN + AQL RYE YRRS    + V++++ ++       S+  VIA+ G+ K+FVG+VVE AL+V + +GE G L PR +REA RRLR+ G +P
Sbjct:   39 VSNFSEAQLNRYEMYRRSAFPKAAVKRLVQSITGC--SVSQNVVIAVSGIAKVFVGEVVEEALDVLERQGEAGPLQPRHLREAVRRLRKGGFIP 130          
BLAST of Ggra9095.t1 vs. uniprot
Match: transcription initiation factor TFIID subunit 11 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9CA38 (transcription initiation factor TFIID subunit 11 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9CA38)

HSP 1 Score: 84.7 bits (208), Expect = 6.500e-17
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKASEQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPTTSNR 192
            VSN T  QL RYE YRRS    + +++++  +       S+  VIA+ G+ K+FVG+VVE AL+V +E+ ETG L P+ +REA RRLR  G +P T ++
Sbjct:  102 VSNFTEEQLDRYEMYRRSAFPKAAIKRLMQTITA--NSVSQNVVIAVSGIAKVFVGEVVEQALDVMEEQNETGPLQPKHLREAVRRLRAQGMIPNTKHK 198          
BLAST of Ggra9095.t1 vs. uniprot
Match: A0A7G3B197 (Putative transcription initiation factor tfiid subunit 11 n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3B197_LUTLO)

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-16
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKASEQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPT 188
            VSN T  QL RYE +RRS    + V++++  +       S+  VIA+ G+ K+F G+VVE AL+V +  GETGAL P+ IREA RRLRR GA+P+
Sbjct:   98 VSNFTEEQLDRYEMFRRSAFPKAAVKRLMQTITGC--SVSQNVVIAMSGIAKVFAGEVVEEALDVMEAAGETGALQPKYIREAVRRLRRRGAIPS 190          
BLAST of Ggra9095.t1 vs. uniprot
Match: B4KID1 (TAFII28 domain-containing protein n=10 Tax=Drosophila TaxID=7215 RepID=B4KID1_DROMO)

HSP 1 Score: 83.6 bits (205), Expect = 1.360e-16
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKASEQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVP 187
            VSN T  QL RYE YRRS    + V++++  +       S+  VIA+ G+ K+FVG+VVE AL+V +++GE+GAL P+ IREA RRLRR G +P
Sbjct:   88 VSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGC--SVSQNVVIAMSGIAKVFVGEVVEEALDVMEQQGESGALQPKFIREAVRRLRRKGRMP 179          
The following BLAST results are available for this feature:
BLAST of Ggra9095.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q4E59.500e-4256.67TAFII28 domain-containing protein n=1 Tax=Chondrus... [more]
A0A7S3ENX12.060e-2550.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1XG477.910e-2549.58Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NJQ93.740e-2355.56TAFII28 domain-containing protein n=1 Tax=Porphyra... [more]
M2XYV02.880e-2144.35Transcription initiation factor TFIID subunit D9 i... [more]
transcription initiation factor TFIID subunit 11 isoform X2 n=1 Tax=Drosophila arizonae TaxID=7263 RepID=UPI00083F0C904.460e-1747.87transcription initiation factor TFIID subunit 11 i... [more]
B7QLL35.640e-1746.81Transcription initiation factor TFII-D subunit, pu... [more]
transcription initiation factor TFIID subunit 11 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9CA386.500e-1744.44transcription initiation factor TFIID subunit 11 n... [more]
A0A7G3B1971.200e-1648.42Putative transcription initiation factor tfiid sub... [more]
B4KID11.360e-1648.94TAFII28 domain-containing protein n=10 Tax=Drosoph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 97..187
e-value: 5.5E-26
score: 92.5
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 98..187
IPR006809TAFII28-like protein domainPFAMPF04719TAFII28coord: 94..179
e-value: 4.5E-26
score: 90.7
IPR006809TAFII28-like protein domainCDDcd08048TAF11coord: 97..181
e-value: 6.81831E-29
score: 101.104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..81
NoneNo IPR availablePANTHERPTHR13218:SF8TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11coord: 12..191
IPR045127Transcription initiation factor TFIID subunit 11-likePANTHERPTHR13218TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATEDcoord: 12..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:177252..177848 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9095.t1Ggra9095.t1Gracilaria gracilis GNS1m malemRNAtig00000176_pilon 177252..177848 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9095.t1 ID=Ggra9095.t1|Name=Ggra9095.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MQDSDQERQAEPMEDTSMPMVDESPPAESVNQTDDVEMTTGKEDENKKDG
EGTGPPLKDAVKNTSESAPAPEEPEDEDAPLDLMKMREFEFSQVSNLTPA
QLRRYEQYRRSDLKSSKVRKVLTALNPMMQKASEQYVIAIKGLGKLFVGD
VVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPTTSNRSEGSLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR006809TAFII28_dom
IPR045127TAF11-like