Ggra9089.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9089.t1
Unique NameGgra9089.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length78
Homology
BLAST of Ggra9089.t1 vs. uniprot
Match: A0A2V3IRY2 (50S ribosomal protein L30 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY2_9FLOR)

HSP 1 Score: 131 bits (329), Expect = 1.990e-38
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 0
Query:    1 MKASDVLRNTKLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIERIHAQDVQNKG 76
            MKA+DVLRNTKLSVKLIRSTIGRP  QRTIVRHLGFR+LNQT IH+DGPRVWGML+KV+HLVKIERIHA+++ +  
Sbjct:    1 MKATDVLRNTKLSVKLIRSTIGRPEYQRTIVRHLGFRRLNQTKIHEDGPRVWGMLEKVLHLVKIERIHAEELSDSS 76          
BLAST of Ggra9089.t1 vs. uniprot
Match: R7QT95 (Ribosomal_L30 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT95_CHOCR)

HSP 1 Score: 108 bits (271), Expect = 1.400e-29
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 0
Query:    1 MKASDVLRNTKLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIERIHAQD 71
            M+A   L NTKL+VKLIRSTIGRPP QR I++ LG RKLNQ  IHDDGPRVWGML+KVIHLVK+ERI A D
Sbjct:    1 MQAWVKLNNTKLAVKLIRSTIGRPPNQRKIIQVLGLRKLNQVRIHDDGPRVWGMLEKVIHLVKLERIRAVD 71          
BLAST of Ggra9089.t1 vs. uniprot
Match: M1V5J0 (Mitochondrial ribosomal protein L30 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V5J0_CYAM1)

HSP 1 Score: 73.6 bits (179), Expect = 1.650e-15
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0
Query:    7 LRNTKLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIERIHAQDVQNK 75
            L +TKL V L RS  G P +QR I+  LG R++NQT +H+DGP  WG ++K+IHLV++ER+ A +   +
Sbjct:    4 LPDTKLLVTLRRSLRGVPERQRRILEALGLRRINQTVLHEDGPVTWGAVRKLIHLVELERVAAAEAAQR 72          
BLAST of Ggra9089.t1 vs. uniprot
Match: A0A661J885 (50S ribosomal protein L30 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661J885_9DELT)

HSP 1 Score: 72.0 bits (175), Expect = 4.430e-15
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIERIHAQD 71
            KL V L+RS IGRP KQ+ +++ LG  KLN+  I  D P +WGM+KKV HLV+++++  ++
Sbjct:    4 KLIVTLVRSKIGRPKKQKAVIKGLGLNKLNKKVILKDSPEIWGMIKKVSHLVEVKKVRGEN 64          
BLAST of Ggra9089.t1 vs. uniprot
Match: A0A090XGD1 (50S ribosomal protein L30 n=17 Tax=Paenibacillaceae TaxID=186822 RepID=A0A090XGD1_PAEMA)

HSP 1 Score: 71.6 bits (174), Expect = 5.150e-15
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIERIHA 69
            KL + L+RS IGRP  QRT V+ LG RK+NQT +H+D P + GM+ +V HLV ++ I A
Sbjct:    3 KLQITLVRSLIGRPENQRTTVKTLGLRKINQTVVHNDNPAIRGMVNQVSHLVSVKEIEA 61          
BLAST of Ggra9089.t1 vs. uniprot
Match: A0A497DYB2 (50S ribosomal protein L30 n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A497DYB2_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 1.480e-14
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIE 65
            +L +KL+RS IGRP K R +VR LG RKLN   I  D P +WGM++KV HLV++E
Sbjct:   16 QLRIKLVRSLIGRPRKHREVVRGLGLRKLNSVVIRKDCPEIWGMIRKVPHLVEVE 70          
BLAST of Ggra9089.t1 vs. uniprot
Match: 50S ribosomal protein L30 n=1 Tax=Desulfovirgula thermocuniculi TaxID=348842 RepID=UPI000412925A (50S ribosomal protein L30 n=1 Tax=Desulfovirgula thermocuniculi TaxID=348842 RepID=UPI000412925A)

HSP 1 Score: 69.7 bits (169), Expect = 2.970e-14
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIERIHA 69
            KL + L+RS IGRP  QR +VR LG RKL  +  H+D P + GM+ KV HLVK+ER+  
Sbjct:    3 KLKITLVRSLIGRPQDQRAVVRSLGLRKLYSSVTHEDTPSIRGMINKVSHLVKVERLEV 61          
BLAST of Ggra9089.t1 vs. uniprot
Match: A0A7C3T3A8 (50S ribosomal protein L30 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C3T3A8_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 4.660e-14
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIERI 67
            +L V L+RS IGRP KQR  VR LG ++LN + +H D P + GM++KVIHLV++E +
Sbjct:    7 RLKVTLVRSLIGRPEKQRRTVRALGLKRLNHSVVHRDTPEIEGMIRKVIHLVRVETL 63          
BLAST of Ggra9089.t1 vs. uniprot
Match: A0A1B1N3H9 (50S ribosomal protein L30 n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A1B1N3H9_9BACL)

HSP 1 Score: 68.2 bits (165), Expect = 1.180e-13
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIE 65
            KL + L+RS IGRP  QRT V+ LG RK+NQT  H+D   + GM+ +V HLVK+E
Sbjct:    3 KLQITLVRSLIGRPENQRTTVKTLGLRKINQTVTHEDNAAIRGMINQVTHLVKVE 57          
BLAST of Ggra9089.t1 vs. uniprot
Match: A0A7C2C5X6 (50S ribosomal protein L30 n=2 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A7C2C5X6_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 1.590e-13
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   12 LSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPRVWGMLKKVIHLVKIE 65
            L +KL++S +G P KQR  VR LG R+LN   I  D P +WGM+KK+ HLVK+E
Sbjct:   14 LRIKLVKSPVGYPEKQRATVRGLGLRRLNSEVIKPDRPEIWGMIKKIPHLVKVE 67          
The following BLAST results are available for this feature:
BLAST of Ggra9089.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRY21.990e-3880.2650S ribosomal protein L30 n=1 Tax=Gracilariopsis c... [more]
R7QT951.400e-2974.65Ribosomal_L30 domain-containing protein n=1 Tax=Ch... [more]
M1V5J01.650e-1547.83Mitochondrial ribosomal protein L30 n=1 Tax=Cyanid... [more]
A0A661J8854.430e-1547.5450S ribosomal protein L30 n=1 Tax=Deltaproteobacte... [more]
A0A090XGD15.150e-1552.5450S ribosomal protein L30 n=17 Tax=Paenibacillacea... [more]
A0A497DYB21.480e-1456.3650S ribosomal protein L30 n=1 Tax=Candidatus Amini... [more]
50S ribosomal protein L30 n=1 Tax=Desulfovirgula thermocuniculi TaxID=348842 RepID=UPI000412925A2.970e-1452.5450S ribosomal protein L30 n=1 Tax=Desulfovirgula t... [more]
A0A7C3T3A84.660e-1452.6350S ribosomal protein L30 n=1 Tax=Actinomycetia ba... [more]
A0A1B1N3H91.180e-1354.5550S ribosomal protein L30 n=2 Tax=Paenibacillus Ta... [more]
A0A7C2C5X61.590e-1353.7050S ribosomal protein L30 n=2 Tax=Candidatus Amini... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036919Ribosomal protein L30, ferredoxin-like fold domain superfamilyGENE3D3.30.1390.20coord: 10..72
e-value: 1.5E-22
score: 80.7
IPR036919Ribosomal protein L30, ferredoxin-like fold domain superfamilySUPERFAMILY55129Ribosomal protein L30p/L7ecoord: 11..67
IPR016082Ribosomal protein L30, ferredoxin-like fold domainPFAMPF00327Ribosomal_L30coord: 13..62
e-value: 4.8E-18
score: 64.9
IPR005996Ribosomal protein L30, bacterial-typeTIGRFAMTIGR01308TIGR01308coord: 13..65
e-value: 3.2E-19
score: 66.3
IPR005996Ribosomal protein L30, bacterial-typePANTHERPTHR15892MITOCHONDRIAL RIBOSOMAL PROTEIN L30coord: 10..68
IPR005996Ribosomal protein L30, bacterial-typeHAMAPMF_01371_BRibosomal_L30_Bcoord: 7..66
score: 17.065271
IPR005996Ribosomal protein L30, bacterial-typeCDDcd01658Ribosomal_L30coord: 12..65
e-value: 9.54622E-19
score: 70.1426
NoneNo IPR availablePANTHERPTHR15892:SF239S RIBOSOMAL PROTEIN L30, MITOCHONDRIALcoord: 10..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:163801..164116 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9089.t1Ggra9089.t1Gracilaria gracilis GNS1m malemRNAtig00000176_pilon 163801..164116 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9089.t1 ID=Ggra9089.t1|Name=Ggra9089.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=78bp
MKASDVLRNTKLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPR
VWGMLKKVIHLVKIERIHAQDVQNKGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036919L30_ferredoxin-like_sf
IPR016082Ribosomal_L30_ferredoxin-like
IPR005996Ribosomal_L30_bac-type