Ggra908.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra908.t1
Unique NameGgra908.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length491
Homology
BLAST of Ggra908.t1 vs. uniprot
Match: A0A2V3IPL9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPL9_9FLOR)

HSP 1 Score: 280 bits (717), Expect = 1.280e-85
Identity = 179/482 (37.14%), Postives = 271/482 (56.22%), Query Frame = 0
Query:    1 MCTIPVDSRFINAIVFILIDVICVMVIISDYFHRVQAIHTAHLLRKGRLLQLRESRLSAFLPPILSDGHLLTRFLQIFYFVLVAVVFGLTLSVNGVTSTRLSVIHPRYLTELQPASHLYTAPRLDPSIFSACIVDNG--QSIQYFSTSFDTVLDQTIFDGRALLSENQQPVSIEPSSVSCQSFGNLNPLIQISPCGSEKFECFNVFWSPSVSYSVRPSFETDV--PQQKTIRVRL-GNRPNGLLLLLLNVRLNNTDLSANDSDTRLICLERPLQGSRASPLFASLNCLLGRWNSDATAFTFRVGFGTISRPNWNEYLESDSVPNLISFTAFSSELELAWAASEGAEDALSDGLGLLKEDVVTAREFVDGVFARATVVRQATE---QETLLRASEVSVTKITPIGSWSYTIILLLSSLILVSQCVFRNRFGLNLRDGAQEQVRLDVSDYSGLLTLIASQSRDEN-NVRPEALPFGTVDGEIRP 473
            MCTIP++S+++NA+VF+++D++C M+II     +VQA +T   L++G  + LRESR + FLP IL DG   TR L + Y +LV VVF LTL++NG T      I  +Y+T L  A   Y + RL PS+FS C+  +    S+ Y+ T+F+T+ +QTIFD  A  ++  +PV I+  S  CQSF N+  L+ I  CG +  EC NV  S      +  S + D+  P Q   R+   G+  + L+L   NV+     L+    + RLICL+RPL+GSR S       C+LG W+  A  FTFRVG  ++S   W + L    +P++ +F   ++E  L W+ + G EDA+ + L  + ED V+AR F+DG+ ARA + ++ +    +  L    E +VTKI  +G+W Y + L  +    V+   FR  F L  R G Q    LD++ YSG+L L++  S +E+       + F   DG + P
Sbjct:    1 MCTIPIESKYVNAVVFLIVDLLCFMIIIGSSLQKVQARYTRRRLQRGYRVHLRESRFAHFLPGILKDGLRRTRLLILSYLLLVLVVFLLTLTINGETEVMQKTISRQYITALAAAPFDYNSARLHPSVFSHCVETSTTTSSVTYYPTAFNTIENQTIFDRMAFRNKQGEPVPIDSESKQCQSFQNVPSLLTIPRCGKDMHECSNVEESDMFLLQIL-SKKNDIEDPWQSVKRLTTRGSGEDSLVLFHANVKPIRPVLATTPYN-RLICLQRPLRGSRFSGAAVWFTCVLGTWSQFADRFTFRVGVASVSFLRWEDSLRQKFIPDVTAFQIMTTEAVLPWSYTTGGEDAIVNALVPVSEDTVSARSFLDGLVARALIAQEVSATPYKGQLFEPIEQAVTKIQAVGAWGYAVFLFAT----VATLAFRGWF-LVTRPGGQ----LDITSYSGMLQLLSYVSGNEDWGDHQRGVSFSLQDGNVAP 471          
BLAST of Ggra908.t1 vs. uniprot
Match: A0A2V3IKH5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKH5_9FLOR)

HSP 1 Score: 203 bits (516), Expect = 1.440e-55
Identity = 139/455 (30.55%), Postives = 236/455 (51.87%), Query Frame = 0
Query:    1 MCTIPVDSRFINAIVFILIDVICVMVIISDYFHRVQAIHTAHLLRKGRLLQLRESRLSAFLPPILSDGHLLTRFLQIFYFVLVAVVFGLTLSVNGVTSTRLSVIHPRYLTELQ-PASHLYTAPRLDPSIFSACI------VDNGQSIQYFSTSFDTVLDQTIFDGRALLSENQQPVSIEPSSVSCQSFGNLNPLIQISPCGSEKFECFNVFWSPSVSYSVRPSFETDVPQQKTIRVRLGNRPNGLLLLLLNVRLNNTDLSANDSDTRLICLERPLQGSRASPLFASLNCLLGRWNSDATAFTFRVG-FGTISRPNWNEYLESDSVPNLISFTAFSSELELAWAASEGAEDALSDGLGLLKEDVVTAREFVDGVFARATVVRQATEQETLLRASEVSVTKITPIGSWSYTIILLLSSLILVSQCVFRNRFGLNLRDGAQEQVRLDVSDYSGLLTLI 447
            M ++ +DSRF+NA ++I++DV C +++IS+    +Q+I T   LR+G+ + L+ + +S      L D   L   L +   +L+ V F LTL V+G T   +     RY+T L           RL+P+ FS C+      ++N  S +Y+ T+FD + D  I D      E+   VS++  ++ CQ  GN+ PL+ +  CG  K +C N++ +  +  SV         Q ++ R        GLL+  L V +N     A+  + R+IC+ERP QGS  SPL +  NC+LG WN + T F FR+G   T+ +      +++  + N ++F A S+E+ L W      E      +  L +D++ AR F+D + +R T+V +  +    L+   + +T+IT +    Y  +++LS ++L  +  FRN F   L     E + +D++ Y+GLL L+
Sbjct:    1 MISLELDSRFVNAAIYIVVDVTCSVILISEL-QAIQSISTKLRLRQGKSINLQHTNMSVLAGGALKDDTPLFSILVMLNLLLLGVFFFLTLGVSGTTKDVVRPASRRYVTRLAVTGDEDPVRTRLNPTFFSGCVQSDGDGMENATSFRYYPTAFDVIGDARIKDLYTFTDESSAVVSVDVHNMLCQKHGNMKPLLLVKRCGKTKGQCSNMYVTEFIGLSV---------QNESSRFETIGSGYGLLVGYLTVTINVESRWASGYN-RMICIERPRQGSVESPLLSFFNCVLGVWNKNMTEFRFRIGKASTLYKSLLQGEIQNPEISNSLTFRASSTEVVLGWNFEPNQEWVFRQAIIALGKDLIDARSFLDILVSR-TLVAEDADGLQFLQEERIQITEITTVSFVGYVTVIVLSVILLFLKTCFRNSFAALL---GVENICVDITTYNGLLELL 440          
BLAST of Ggra908.t1 vs. uniprot
Match: A0A2V3INE1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INE1_9FLOR)

HSP 1 Score: 140 bits (353), Expect = 1.200e-32
Identity = 132/479 (27.56%), Postives = 234/479 (48.85%), Query Frame = 0
Query:    1 MCTIPVDSRFINAIVFILIDVICVMVIISDYFHRVQAIHTAHLLRKGRLLQLRESRLSAFLPPILSDGHLLTRFLQIFYFVLVAVVFGLTLSVNGVTSTRLSVIHPRYLTELQPA-SHLYTAPRLDPSIFSACIVDNGQSIQYFSTSFDTVLDQT-IFDGRA--LLSENQQPVSIEPSSVSCQSFGNLNPLIQISPCGSEKFECFNVFWS-PSVSYSVRPSFETDVPQQKTIRVRLGNRPNGLLLLLLNVRLNNTDLSANDSDTRLICLERPLQGSRASPLFASLNCLLGRWNSDATAFTFRVGFGTISRPNWNEYLESDSVPNLISFTAFSSELELAWAASEGAEDALSDGLGLLKEDVVTAREFVDGVFARATVVRQATEQETLLRASEVSVTKITPIGSWSYTIILLLSSLILVSQCVFRNRFGLNLRDGAQEQVRLDVSDYSGLLTLIASQ-SRDENNVR-PEALPFGTVDGEIR 472
            M T+ VDSRFINA ++I++DVI   V++S     +Q  +  H + +G  + ++E  L AF   ++SDG  L+      + +L+A++F LTL VNG +          Y++ L P+ + L    R+ P I ++C       + YF  +FD+  ++  + DG A   +      ++++  SV CQ +    PL+++  CG  +  C N++ + P V    R        Q+  + V  G+      LL  +VR  ++ +S    + RLICL        +  L    NC+LG WN + +AF FR+G  +++    N  +++ +    + FTA+S E+E+ W A+E  E  LS+GL  +  ++V AR F+D   +R++    A     +    EV VT I+      Y ++ +L    L+  C+      +  R  +  +   +V+ Y GLL ++    S+++ ++  P  L F    GE +
Sbjct:    1 MVTLEVDSRFINAGIYIIVDVIIFAVLLSGIIS-LQTWYVKHRMFQGHDVSVQEFPLIAFSGGVVSDGTPLSFVFVGAHLLLMAILFSLTLGVNGRSDKAYRPTKREYISRLTPSDTPLVAEQRIYPQILASCNSFEKSQLMYFEVAFDSEENRMELTDGTAENQIGNESVGMAVDSESVLCQDYEEAKPLLRVLKCGVNRNACCNLYITQPQVLVLERGDGGEQDWQRNGVAVWFGSTA----LLRNSVRSVSSQVSTARYN-RLICLSSQTGSLPSGELGMRTNCMLGVWNENKSAFRFRLGTISLTNKTRNSIMDT-AEDRKVEFTAYSVEIEIEWDANE--EKVLSNGLHSIGGNMVPARLFLDTFVSRSSQ-SVALGNTAVYEKYEVLVTDISTACLVGYGVLTILG---LIVGCL---TLWMKCRKKSDTEAIPEVNTYQGLLLMLGKLLSQNQTDLGGPSRLAFRFDRGEAK 463          
BLAST of Ggra908.t1 vs. uniprot
Match: A0A2V3IPN3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPN3_9FLOR)

HSP 1 Score: 133 bits (334), Expect = 6.110e-30
Identity = 116/440 (26.36%), Postives = 201/440 (45.68%), Query Frame = 0
Query:    3 TIPVDSRFINAIVFILIDVICVMVIISDYFHRVQAIHTAHLLRKGRLLQLRESRLSAFLPPILSDGHLLTRFLQIFYFVLVAVVFGLTLSVNGVTSTRLSVIHPRYLTELQPASHLYTAPRLDPSIFSACIVDN-GQSIQYFSTSFDTVLDQTIFDGRALLSENQQPVSIEPSSVSCQSFGNLNPLIQISPCGSEKFECFNVFWSPS---VSYSVRPSFETDVPQQKTIR---VRLGNRPNGLLLLLLNVRLNNTDLSANDSD---TRLICLE---RPLQGSRASPLFASLNCLLGRWNSDATAFTFRVGFGTISR-------PNWNEYLESDSVPNLISFTAFSSELELAWAASEGAEDALSDGLGLLKEDVVTAREFVDGVFARATVVRQATEQETLLRASEVSVTKITPIGSWSYTIILLLSSLILVSQCVFRNRFG 422
            T+ + S  INA V++L DV+ V   +S      QA   +  L     + +R+SR S   P I S        L   + + + ++F L L +NG T      I   +L++L  +   +   RL   +F++C   N   S+ YF  +F+ V ++++ D         + V ++ +S  CQSFGNL P++ +  CG+   +C NV  +P    ++ ++ P+    +   K      + L   P   +   L  R+++     N +     RLIC E    PL   +    F  LNC+ G+W+S+ T FTFRVG     +       P W++ L+S +    ++F+A ++   + W A +  E A ++ L  ++ D++ A+ F+D +  RA+          LL     +VT I      SY I+L    +  ++  V RN  G
Sbjct:   55 TLNIPSGLINAGVYVLFDVLVVATFVS-LLASFQAWRVSRTLFSDNTVTVRDSRFSFLAPGIRSLNSHAHLPLIACHVIFLCIIFALNLGINGRTRQTTRPISRSFLSKLSASEFEFGIDRLSFRLFASCTTPNFNSSMTYFPVAFNAVPNRSVSDPTGFRDSQGKLVPLDVNSFQCQSFGNLPPILHVPRCGATPQQCTNVVTAPIHTLIANTMTPNSTNKITASKPWHRPTIFLSGNPPPTVRFHLPARVHSPSYHPNSTMLTFNRLICRETPYNPLPDPQRRNSFW-LNCIFGKWDSNDTLFTFRVGHAVAPKLSTLPNSPTWDQ-LQSQNSYLFVNFSATTAVSTVQWPAHKYGESAFAEALFAIRNDLMPAKAFLDELVTRASAPSATGSNIALLEPVPENVTDIHLGAFVSYVIVLFAVFIPYLALHVHRNVLG 491          
The following BLAST results are available for this feature:
BLAST of Ggra908.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IPL91.280e-8537.14Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IKH51.440e-5530.55Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3INE11.200e-3227.56Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IPN36.110e-3026.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 418..490
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 98..397
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..76
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 398..417
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 13..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 77..97
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 77..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:301471..302943 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra908.t1Ggra908.t1Gracilaria gracilis GNS1m malemRNAtig00000049_pilon 301471..302943 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra908.t1 ID=Ggra908.t1|Name=Ggra908.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
MCTIPVDSRFINAIVFILIDVICVMVIISDYFHRVQAIHTAHLLRKGRLL
QLRESRLSAFLPPILSDGHLLTRFLQIFYFVLVAVVFGLTLSVNGVTSTR
LSVIHPRYLTELQPASHLYTAPRLDPSIFSACIVDNGQSIQYFSTSFDTV
LDQTIFDGRALLSENQQPVSIEPSSVSCQSFGNLNPLIQISPCGSEKFEC
FNVFWSPSVSYSVRPSFETDVPQQKTIRVRLGNRPNGLLLLLLNVRLNNT
DLSANDSDTRLICLERPLQGSRASPLFASLNCLLGRWNSDATAFTFRVGF
GTISRPNWNEYLESDSVPNLISFTAFSSELELAWAASEGAEDALSDGLGL
LKEDVVTAREFVDGVFARATVVRQATEQETLLRASEVSVTKITPIGSWSY
TIILLLSSLILVSQCVFRNRFGLNLRDGAQEQVRLDVSDYSGLLTLIASQ
SRDENNVRPEALPFGTVDGEIRPLETREGLRRVPTVHIHV*
back to top