Ggra9052.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9052.t1
Unique NameGgra9052.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length145
Homology
BLAST of Ggra9052.t1 vs. uniprot
Match: A0A2V3ISZ8 (60S ribosomal protein L24 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISZ8_9FLOR)

HSP 1 Score: 259 bits (661), Expect = 5.520e-87
Identity = 134/144 (93.06%), Postives = 139/144 (96.53%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGMRSKRAAAPSAKGVNKMPVAQRR 144
            MVVKT+LCNYSGFRIYPGHGRRYIR+DGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRK+SSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGM++KR   PSAKG  KMPVAQRR
Sbjct:    1 MVVKTDLCNYSGFRIYPGHGRRYIRIDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKMSSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGMKTKRGPVPSAKGAQKMPVAQRR 144          
BLAST of Ggra9052.t1 vs. uniprot
Match: R7Q3B7 (Ribosomal protein L24 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3B7_CHOCR)

HSP 1 Score: 231 bits (589), Expect = 5.400e-76
Identity = 121/145 (83.45%), Postives = 131/145 (90.34%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGMRSK-RAAAPSAKGVNKMPVAQRR 144
            MVVKT+LC YSGFRIYPGHGRRYIR DGRQYVF+N+KSEASFHMKRK AKHSWTQLYRRLNKKG+QEETQRRR RRK+S+APKAVEGA LEVIKAKRNQRPEVRKAAR+AALKDIKERKK  + K R+  PS +G  KMPVAQRR
Sbjct:    1 MVVKTDLCFYSGFRIYPGHGRRYIRTDGRQYVFINSKSEASFHMKRKAAKHSWTQLYRRLNKKGIQEETQRRRNRRKVSAAPKAVEGAPLEVIKAKRNQRPEVRKAARDAALKDIKERKKAAKPKTRSQIPSGRGAKKMPVAQRR 145          
BLAST of Ggra9052.t1 vs. uniprot
Match: A0A7S0ZEW3 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEW3_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 5.610e-48
Identity = 82/118 (69.49%), Postives = 99/118 (83.90%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKER 118
            MVVKTELC++SGF+IYPGHG R+IR+DG+ Y F+N KS AS  M+RK A  +WTQLYRRL+KKG  EE+ +RRTR + S+ PKAV GASLEVI+AKR Q+PEVRKAAREAALK+IK R
Sbjct:    1 MVVKTELCSFSGFKIYPGHGSRFIRLDGKHYTFLNGKSRASLVMRRKAANLNWTQLYRRLHKKGQTEESSKRRTRARRSTVPKAVVGASLEVIRAKREQKPEVRKAAREAALKEIKAR 118          
BLAST of Ggra9052.t1 vs. uniprot
Match: A0A1X6NYU8 (TRASH domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYU8_PORUM)

HSP 1 Score: 160 bits (404), Expect = 8.640e-48
Identity = 90/148 (60.81%), Postives = 108/148 (72.97%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKER---KKGMRSKRAAAPSAK-GVNKMPVAQRR 144
            MVVKT++C YSGFRIYPGHG R+IRVDG+ YVF N+K EASFHMKRK AK  WT L+R+L+KKG QEE  RRR RR  +   K V GA L++IKA+R QRPE+RKAAR++ALK+ KER   KK  RSK  A    K G  K P  ++R
Sbjct:    1 MVVKTDVCQYSGFRIYPGHGSRFIRVDGKSYVFANSKCEASFHMKRKAAKRPWTVLFRKLHKKGAQEEITRRRARRARTVVTKPVVGAPLDIIKARRTQRPEMRKAARDSALKEAKERNKTKKAERSKNIAGQQGKFGGAKAPPPKKR 148          
BLAST of Ggra9052.t1 vs. uniprot
Match: A0A7S0EZX2 (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EZX2_9EUKA)

HSP 1 Score: 149 bits (377), Expect = 1.530e-43
Identity = 78/121 (64.46%), Postives = 100/121 (82.64%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISS-APKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKK 120
            MVVKTE+C+YSGFRIYPGHG +Y+R D + ++F+N KS++ FH K  P K +WT LYRR++KKG  E+TQ++ T+RK+S  APKAV GASLE+IK KRNQ+PEVR AAREAAL++IKER K
Sbjct:    1 MVVKTEVCSYSGFRIYPGHGIKYVRGDSKSFLFINRKSKSYFHQKFNPRKIAWTLLYRRMHKKGTLEDTQKK-TKRKVSKGAPKAVVGASLELIKQKRNQKPEVRAAAREAALREIKERAK 120          
BLAST of Ggra9052.t1 vs. uniprot
Match: A0A5J4Z255 (60S ribosomal protein L24 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z255_PORPP)

HSP 1 Score: 144 bits (364), Expect = 4.930e-42
Identity = 72/109 (66.06%), Postives = 91/109 (83.49%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAARE 109
            MVVKTELC +SG+RIYPGHG R IRVDG+ ++F+NAKS ASF M+RK A  +WT LYRRL+KKGV E+  ++R R + ++APK +EGASLE IKAKR+Q+PEVRKAAR+
Sbjct:    1 MVVKTELCQFSGYRIYPGHGSRLIRVDGKTHIFLNAKSRASFLMRRKAANLNWTVLYRRLHKKGVTEDNSKKRVRARKATAPKPIEGASLEQIKAKRSQKPEVRKAARD 109          
BLAST of Ggra9052.t1 vs. uniprot
Match: A0A7J7IGT2 (60S ribosomal protein L24 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGT2_9RHOD)

HSP 1 Score: 141 bits (355), Expect = 1.510e-40
Identity = 69/119 (57.98%), Postives = 96/119 (80.67%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKR-NQRPEVRKAAREAALKDIKER 118
            MVV+T++CN+SGFRIYPGHG  ++R DG+ +VF + K ++SFHM+RKPA  +WT +YRRLN+KG +E+ ++R  RR + +  K VEGAS+EV++AKR +QRP+VR AAR AALK+IK R
Sbjct:    1 MVVRTQICNFSGFRIYPGHGSTFVRSDGKVFVFASLKCKSSFHMRRKPASLNWTYIYRRLNRKGQEEQEKKRTRRRAVKTVQKPVEGASIEVLRAKRQSQRPQVRTAARAAALKEIKTR 119          
BLAST of Ggra9052.t1 vs. uniprot
Match: A0A7S0BMS9 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BMS9_9RHOD)

HSP 1 Score: 140 bits (353), Expect = 4.660e-40
Identity = 77/133 (57.89%), Postives = 98/133 (73.68%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAA-LKDIKERKKGMRSKRAAAPSA 132
            MVVKTE+CN+SGF+IYPGHG R+ R D + + F+N KS+A   MKRKP K +WTQLYRR+NKKG QEET +RR R+  +   K VEGASLEVIKAKRNQ+   +    +AA L++IK RK G ++K+  AP A
Sbjct:    1 MVVKTEVCNFSGFKIYPGHGSRFARSDEKVFNFINGKSKACQKMKRKPVKLNWTQLYRRVNKKGAQEETVKRRARKVNTVVMKPVEGASLEVIKAKRNQQQRSKATGAKAANLREIKARKAGGKTKKGGAPLA 133          
BLAST of Ggra9052.t1 vs. uniprot
Match: M1VC66 (60S ribosomal protein L24 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VC66_CYAM1)

HSP 1 Score: 138 bits (348), Expect = 2.160e-39
Identity = 68/122 (55.74%), Postives = 97/122 (79.51%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQ-RPEVRKAAREAALKDIKERKKG 121
            MVV+T++CN+SGFRIYPGHG  ++R DG+ +VF N+K ++SFHM+RKPA  +WT +YRRL++KG +E+ +RR  RR + +  K VEGAS+EV++AKR   R +V+ AAR AALK+IK R++G
Sbjct:    1 MVVRTQICNFSGFRIYPGHGSTFVRSDGKVFVFANSKCKSSFHMRRKPASLNWTYIYRRLHRKGQEEQEKRRTRRRAVKTVQKPVEGASIEVLRAKRQAPRAQVKTAARAAALKEIKARQQG 122          
BLAST of Ggra9052.t1 vs. uniprot
Match: RL24 (60S ribosomal protein L24 n=3 Tax=Branchiostoma TaxID=7737 RepID=RL24_BRABE)

HSP 1 Score: 137 bits (345), Expect = 9.400e-39
Identity = 75/129 (58.14%), Postives = 95/129 (73.64%), Query Frame = 0
Query:    3 VKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGMRSKRAAAPS 131
            +K ELC YSG++IYPGHG+RY R DGR Y F+NAK EASF MKR P + +WT LYRR +KKG QEE Q++R+RR  +   +A+ GASL  I AKRNQ+PEVRKA RE A+K  KE+KK  +  +  AP+
Sbjct:    1 MKIELCLYSGYKIYPGHGKRYARTDGRVYTFLNAKCEASFLMKRNPREITWTVLYRRKHKKGQQEEIQKKRSRR-TAKFQRAITGASLTEIMAKRNQKPEVRKAQREQAVKAAKEKKKADQVGKRKAPA 128          
The following BLAST results are available for this feature:
BLAST of Ggra9052.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISZ85.520e-8793.0660S ribosomal protein L24 n=1 Tax=Gracilariopsis c... [more]
R7Q3B75.400e-7683.45Ribosomal protein L24 n=1 Tax=Chondrus crispus Tax... [more]
A0A7S0ZEW35.610e-4869.49Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6NYU88.640e-4860.81TRASH domain-containing protein n=1 Tax=Porphyra u... [more]
A0A7S0EZX21.530e-4364.46Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A5J4Z2554.930e-4266.0660S ribosomal protein L24 n=1 Tax=Porphyridium pur... [more]
A0A7J7IGT21.510e-4057.9860S ribosomal protein L24 n=1 Tax=Cyanidiococcus y... [more]
A0A7S0BMS94.660e-4057.89Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M1VC662.160e-3955.7460S ribosomal protein L24 n=1 Tax=Cyanidioschyzon ... [more]
RL249.400e-3958.1460S ribosomal protein L24 n=3 Tax=Branchiostoma Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 3..65
e-value: 1.7E-25
score: 91.1
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 4..68
e-value: 1.2E-26
score: 92.7
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 4..134
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 3..56
e-value: 8.57715E-21
score: 77.6126
NoneNo IPR availableGENE3D6.10.250.1270coord: 69..136
e-value: 1.7E-17
score: 65.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..144
NoneNo IPR availablePANTHERPTHR10792:SF160S RIBOSOMAL PROTEIN L24coord: 4..134
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 6..58
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 10..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:48089..48761 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9052.t1Ggra9052.t1Gracilaria gracilis GNS1m malemRNAtig00000176_pilon 48089..48761 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9052.t1 ID=Ggra9052.t1|Name=Ggra9052.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=145bp
MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAK
HSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQR
PEVRKAAREAALKDIKERKKGMRSKRAAAPSAKGVNKMPVAQRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038630L24e/L24_sf
IPR000988Ribosomal_L24e-rel
IPR023442Ribosomal_L24e_CS