Ggra9043.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9043.t1
Unique NameGgra9043.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length387
Homology
BLAST of Ggra9043.t1 vs. uniprot
Match: A0A2V3J721 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J721_9FLOR)

HSP 1 Score: 312 bits (799), Expect = 1.530e-100
Identity = 158/312 (50.64%), Postives = 208/312 (66.67%), Query Frame = 0
Query:   73 SAAQSQSTLTLLGAPFLPDVKLVAPHSRVFAREFQCLLFSFGDVRFCARDTLELVEDCVRDEVRRLAPGGLGAICSRLDTRAVLRLNNYYKVCQMNRRVPIPHHGDPFASHRDPYHEGPNPEALTYWCEKFLQHLRFSMSPVEFTYLLQCKSISFAKDESFSADPKMRGMGRATLFKEWLATPCADQDIPAVAHLTWELTGQLVQTALLCRYNCELQSQLPSSSSFMWSKERHCLEALSHGVGTALTIPCSELHAAKLMTEIRLYINRPYTRRFHMRSRADGLLPRHINAALSQLKEQGWGGKASLRVGLFD 384
            S + + S LTLLG+ F PDVK V P+ RVFA+EFQ LLF+FGD RFCARDTLELVED VR E+RRLA  GLGA  +RLD +A+ RLNN++K C++ RR+P+  +GDP     D  ++      L++W ++    L+F MS  +   LL  K+  F K +S S DP ++G  R+TLFK+WL  PC+D D+ A++HLTWELTGQLVQTAL+ ++  +LQ    +     W   +H ++AL HGV TALTIPCSE  A  L+ EI  YI R  +++   R  AD LLP HI AAL  L+ +GWGG+  LR GLFD
Sbjct:   71 SISHNSSALTLLGSSFHPDVKYVVPNHRVFAQEFQDLLFAFGDARFCARDTLELVEDAVRTELRRLAFTGLGAALTRLDAKAIHRLNNHFKECRIPRRLPLHRYGDPLTGATDSPYDPAFNGILSHWTDRLFYKLKFVMSQQDSLVLLHSKTAVFTKSQSRSPDPNIQGTERSTLFKQWLGLPCSDADLAALSHLTWELTGQLVQTALVRKHYNQLQLNGDNPCPLSWCDAKHWMDALGHGVATALTIPCSEYQAIVLIQEITKYIKRLASQKHKWRPTADCLLPHHIYAALDDLRARGWGGQHRLRAGLFD 382          
BLAST of Ggra9043.t1 vs. uniprot
Match: R7Q7K5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7K5_CHOCR)

HSP 1 Score: 122 bits (305), Expect = 5.520e-27
Identity = 103/337 (30.56%), Postives = 141/337 (41.84%), Query Frame = 0
Query:  100 RVFAREFQCLLFSFGDVRFCARDTLELVEDCVRDEVRRLA-----------PGGLGAI--------CSRLDTRAVLRLNNYYK-------VCQMN----RRVPIPH--------------HGDPFASHRDPYHEGPNPEALTYWCEKFLQHLRFSMSPVEFTYLLQCKSISFAKDESFSADPKMRGMGRATLFKEWLATP------CADQDIPAVAHLTWELTGQLVQTALLCRYNCELQSQLPSSSSFMWSKERHCLEALSHGVGTALTIPCSELHA----AKLMTEIRLYINRPYTRRFHMRSRADGLLPRHINAALSQLKEQGWGGKASLRVGL 382
            R+F  E QCL+ +FG+VRFCARD LEL ED VRD V R A           P G   +        C   D RA++RL    K       +  M+      VP P               H    AS+       P  +  T    +     R  M P  F   L C+S+S  + ES S  P +RG  R  LF+EW+          ++  + A+ H+ WE  G + QTALL RY+           +  WS   + +EAL+ G+G  + IP SE+      + L T I    N     R +      GL+PR I  AL +L     G  +  R+GL
Sbjct:  159 RLFGHEIQCLMHAFGEVRFCARDVLELTEDSVRDAVIRTAIAAHQFATEETPAGEEIVVSLRHVVRCMYSDYRAIVRLQQALKPDLPKLNISAMDFERLSNVPPPQWDRFSELGFLGSLVHTPDKASNFP-----PRADVQTLCAGRSFHIYRLVMGPPNFQDWLMCRSVSLVRQESKSRAPAIRGQPRIDLFREWIGVEQNLNFSISEDGLIALGHVAWEAIGLITQTALLHRYDSIAAKGARDPRARYWSFASNLVEALNFGIGAGIIIPLSEIQMLSVRSALDTRIVSLQNSSNKWRGYAGDVYPGLVPRDIREALRRL-----GRSSGSRLGL 485          
BLAST of Ggra9043.t1 vs. uniprot
Match: A0A5J4Z9J1 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9J1_PORPP)

HSP 1 Score: 63.2 bits (152), Expect = 4.880e-7
Identity = 39/148 (26.35%), Postives = 65/148 (43.92%), Query Frame = 0
Query:  219 LLQCKSISFAKDESFSADPKMRGMGRATLFKEWL-------------ATPCA-------------------DQDIPAVAHLTWELTGQLVQTALLCRYNCELQSQLPSSSSFMWSKERHCLEALSHGVGTALTIPCSELHAAKLMTEI 334
            L  C+ +SF +D       ++R + R  LF+EWL             A P A                   +  + A+ H+ WE  G L Q+ALL +Y  + ++      +  WS+ RH L A+ HG+ TA+  P +++   ++  EI
Sbjct:  892 LQDCRQVSFVRDTG----GRLRNVPRVVLFREWLSVSTVSGPGLGYGAAPGAGTSSGSLEHSRSSLPFVVEEPALCALGHVAWEALGTLTQSALLVKYFDDFENGRGDPRAAHWSRSRHVLAAVRHGIATAVMAPLADVDLLRMRDEI 1035          
BLAST of Ggra9043.t1 vs. uniprot
Match: A0A7V5I6S3 (Uncharacterized protein (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I6S3_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 3.090e-6
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 0
Query:   82 TLLGAPFLPDVKLVAPHSRVFAREFQCLLFSFGDVRFCARDTLELVEDCVRDEVRRLA 139
            +L  A + P   LV    R F  E QCL+ +FG+VR+CARD LEL+ED VRD VR  A
Sbjct:   28 SLEAAAYGPPETLV--RRRKFGHEIQCLMHAFGEVRYCARDVLELMEDMVRDGVRLFA 83          
The following BLAST results are available for this feature:
BLAST of Ggra9043.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J7211.530e-10050.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q7K55.520e-2730.56Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4Z9J14.880e-726.35Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7V5I6S33.090e-651.72Uncharacterized protein (Fragment) n=1 Tax=bacteri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 101..141
e-value: 3.7E-5
score: 25.3
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 101..137
e-value: 2.3E-4
score: 21.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:25786..26946 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9043.t1Ggra9043.t1Gracilaria gracilis GNS1m malemRNAtig00000176_pilon 25786..26946 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9043.t1 ID=Ggra9043.t1|Name=Ggra9043.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=387bp
MTGTPRVPVPASPNPRTKPKPRARPTSAATPPATPRRPEKRKPPSSPSTS
SARPRKRAREPPRNPKRGARPLSAAQSQSTLTLLGAPFLPDVKLVAPHSR
VFAREFQCLLFSFGDVRFCARDTLELVEDCVRDEVRRLAPGGLGAICSRL
DTRAVLRLNNYYKVCQMNRRVPIPHHGDPFASHRDPYHEGPNPEALTYWC
EKFLQHLRFSMSPVEFTYLLQCKSISFAKDESFSADPKMRGMGRATLFKE
WLATPCADQDIPAVAHLTWELTGQLVQTALLCRYNCELQSQLPSSSSFMW
SKERHCLEALSHGVGTALTIPCSELHAAKLMTEIRLYINRPYTRRFHMRS
RADGLLPRHINAALSQLKEQGWGGKASLRVGLFDFV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003195TFIID_TAF13