Ggra9028.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9028.t1
Unique NameGgra9028.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length126
Homology
BLAST of Ggra9028.t1 vs. uniprot
Match: A0A2V3INK7 (Nuclear transcription factor Y subunit B-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INK7_9FLOR)

HSP 1 Score: 241 bits (614), Expect = 1.910e-80
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
Query:    1 MAETQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETVMQEKGEDTKNTD 118
            MAETQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETVMQEKGEDTKNTD
Sbjct:    1 MAETQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETVMQEKGEDTKNTD 118          
BLAST of Ggra9028.t1 vs. uniprot
Match: A0A1X6NML2 (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NML2_PORUM)

HSP 1 Score: 188 bits (478), Expect = 1.150e-59
Identity = 94/112 (83.93%), Postives = 102/112 (91.07%), Query Frame = 0
Query:    8 EPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETVMQEKGEDT-KNTD 118
            E D  VRE D++LPTANIARIMKKALP +AKVAKDGKDT+QECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLK YL+RYRET+ QEK E+  KNT+
Sbjct:   13 EEDGSVRELDKYLPTANIARIMKKALPSSAKVAKDGKDTIQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKVYLSRYRETMSQEKEEEAAKNTE 124          
BLAST of Ggra9028.t1 vs. uniprot
Match: M2VTX7 (Nuclear transcription factor Y, beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTX7_GALSU)

HSP 1 Score: 183 bits (464), Expect = 2.370e-57
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 0
Query:   14 REQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETVMQEKGED 113
            REQ++FLPTANIARIMKKALP NAK+AKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAM+TLGFD Y+EPLK YLARYRE +  EKGE+
Sbjct:   26 REQEKFLPTANIARIMKKALPPNAKIAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMNTLGFDNYVEPLKIYLARYREAMSAEKGEE 125          
BLAST of Ggra9028.t1 vs. uniprot
Match: A0A7S0ZJ35 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJ35_9RHOD)

HSP 1 Score: 180 bits (456), Expect = 2.130e-56
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 0
Query:   14 REQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETVMQEKGEDTK 115
            REQD++LPTANIARIMK+ALP NAKVAKDGKDTVQECVSEFVSFITSEASDKC REKRKTING+DI+WAM+TLGFDKYIEPLK YL RYRE ++ EKGE+ K
Sbjct:   13 REQDKYLPTANIARIMKQALPDNAKVAKDGKDTVQECVSEFVSFITSEASDKCIREKRKTINGEDIIWAMTTLGFDKYIEPLKIYLTRYREIMVNEKGEEEK 114          
BLAST of Ggra9028.t1 vs. uniprot
Match: A0A6T6NW26 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6NW26_9RHOD)

HSP 1 Score: 174 bits (441), Expect = 3.740e-54
Identity = 82/100 (82.00%), Postives = 91/100 (91.00%), Query Frame = 0
Query:   14 REQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETVMQEKGED 113
            REQDRFLP ANIARIMK ALP NAK+AKDGK+TVQECVSEFVSFITSEASDKCQREKRKTINGDD+LWAM+TLGF+ Y+EPLK YL RYR+TV  EK ++
Sbjct:   15 REQDRFLPIANIARIMKHALPQNAKIAKDGKETVQECVSEFVSFITSEASDKCQREKRKTINGDDLLWAMNTLGFENYVEPLKTYLQRYRDTVKSEKDDE 114          
BLAST of Ggra9028.t1 vs. uniprot
Match: A0A2R6R7Z6 (Nuclear transcription factor Y subunit B-10 like n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6R7Z6_ACTCC)

HSP 1 Score: 174 bits (441), Expect = 5.140e-54
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0
Query:    3 ETQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETV 106
            E+ ++ P  GVREQDRFLP ANI+RIMKKALP N K+AKD K+TVQECVSEF+SF+TSEASDKCQREKRKTINGDD+LWAM+TLGF+ YI+PLK YLARYRE V
Sbjct:   15 ESGDQSPRSGVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLARYREVV 118          
BLAST of Ggra9028.t1 vs. uniprot
Match: M4C128 (CBFD_NFYB_HMF domain-containing protein n=32 Tax=Oomycota TaxID=4762 RepID=M4C128_HYAAE)

HSP 1 Score: 174 bits (440), Expect = 6.230e-54
Identity = 82/113 (72.57%), Postives = 97/113 (85.84%), Query Frame = 0
Query:    4 TQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETVMQEKGEDTKN 116
            +++E  D  +REQDRFLPTANI+RIMK +LP  AK+AKDGK+TVQECVSEF+SFITSEASDKCQ+EKRKTINGDDI+WAMSTLGFD Y+EPLK YL +YRE+V  EK +   N
Sbjct:    3 SKDEHNDDEIREQDRFLPTANISRIMKVSLPSTAKIAKDGKETVQECVSEFISFITSEASDKCQQEKRKTINGDDIIWAMSTLGFDSYVEPLKLYLQKYRESVKVEKNDKKDN 115          
BLAST of Ggra9028.t1 vs. uniprot
Match: A0A4D9DEI5 (CBFD_NFYB_HMF domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEI5_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.450e-53
Identity = 79/94 (84.04%), Postives = 90/94 (95.74%), Query Frame = 0
Query:   13 VREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRETV 106
            VREQDR+LP ANI+RIMKK+LP NAK+AKD K+TVQECVSEF+SFITSEASDKCQ+EKRKTINGDD+LWAMSTLGFDKY+EPLKHYL +YRE+V
Sbjct:   21 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESV 114          
BLAST of Ggra9028.t1 vs. uniprot
Match: A0A6U0MLR3 (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A6U0MLR3_MICPS)

HSP 1 Score: 174 bits (442), Expect = 1.510e-53
Identity = 84/106 (79.25%), Postives = 96/106 (90.57%), Query Frame = 0
Query:    2 AETQNEEPDQG--VREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRET 105
            AE  +E+ D+G  VREQDRFLP ANI+RIMKKALP NAK+AKD K+TVQECVSEF+SFITSEASDKCQREKRKTINGDD+LWAMSTLGF++Y+EPLK YL +YRET
Sbjct:   41 AEIDDEDDDKGGNVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYVEPLKVYLHKYRET 146          
BLAST of Ggra9028.t1 vs. uniprot
Match: A0A7J7D844 (Putative ccaat-binding transcription factor subunit A n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D844_TRIWF)

HSP 1 Score: 173 bits (438), Expect = 4.330e-53
Identity = 80/96 (83.33%), Postives = 89/96 (92.71%), Query Frame = 0
Query:    9 PDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQECVSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLARYRE 104
            P  GVREQDR+LP ANI+RIMKKALP N K+AKD KDTVQECVSEF+SFITSEASDKCQ+EKRKTINGDD+LWAM+TLGF++YIEPLK YLARYRE
Sbjct:   21 PHSGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIEPLKVYLARYRE 116          
The following BLAST results are available for this feature:
BLAST of Ggra9028.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INK71.910e-80100.00Nuclear transcription factor Y subunit B-1 n=1 Tax... [more]
A0A1X6NML21.150e-5983.93CBFD_NFYB_HMF domain-containing protein n=1 Tax=Po... [more]
M2VTX72.370e-5787.00Nuclear transcription factor Y, beta n=1 Tax=Galdi... [more]
A0A7S0ZJ352.130e-5684.31Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A6T6NW263.740e-5482.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2R6R7Z65.140e-5477.88Nuclear transcription factor Y subunit B-10 like n... [more]
M4C1286.230e-5472.57CBFD_NFYB_HMF domain-containing protein n=32 Tax=O... [more]
A0A4D9DEI51.450e-5384.04CBFD_NFYB_HMF domain-containing protein n=2 Tax=Mo... [more]
A0A6U0MLR31.510e-5379.25Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7J7D8444.330e-5383.33Putative ccaat-binding transcription factor subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 85..103
score: 38.88
coord: 47..65
score: 51.44
coord: 66..84
score: 43.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..125
NoneNo IPR availablePANTHERPTHR11064:SF98NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11coord: 7..120
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 19..83
e-value: 3.2E-26
score: 91.4
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 7..125
e-value: 1.1E-45
score: 156.9
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 16..119
IPR027113Transcription factor NFYB/HAP3PANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 7..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1286323..1286700 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9028.t1Ggra9028.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 1286323..1286700 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9028.t1 ID=Ggra9028.t1|Name=Ggra9028.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=126bp
MAETQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQEC
VSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLA
RYRETVMQEKGEDTKNTDASKHTSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
IPR027113Transc_fact_NFYB/HAP3