Ggra9023.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9023.t1
Unique NameGgra9023.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Homology
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BLAST of Ggra9023.t1 vs. uniprot
Match: A0A2V3INK5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INK5_9FLOR)

HSP 1 Score: 134 bits (336), Expect = 1.160e-33
Identity = 95/289 (32.87%), Postives = 142/289 (49.13%), Query Frame = 0 
Query:   15 WSEGAFNTGRHK--LHIAANDDGDIVADAHRRLPDHMIVATDSASITPVALPLEHGYASFQTEQTEQVENAGANAMHADFDHHVADEEQENTATRNHRQVQQXXXXXXXXXXXXXXXXXXXXXTEVTAESVGVSRDTPRKRSGSNRRKRYRCGYCHELGHNQKTCPIRPPHLPTRSQAHRTSIQDTAQLQLVAAKVAEELSRMFFEMTNAHSGDEWQPPQQISYDTVLEAANKEVMQANQSVADATTDQEFDNAIDNLQSAVCMLEKVAVLIYKSAALAHTMSRSVEDP 301
            W        RHK  L  A+ +D       H+ LPD+ I    + S  PV L  +  Y+ F    + + +          ++H+ A  E   + ++   + Q                      +E+  +++      P+KR  S+RRK YRCGYCH LGHNQKTCP RPPHL    +A  +    +AQ+Q +  KV++E++ +F E   A   D+ Q  Q I+ DTVLE  NK +  A+ +VA ATTD  + +AI  LQ+AV + EKVA L+ +    A  +SR  E+P
Sbjct:   30 WHPPHSTPDRHKSQLSYASTNDEGHTTSTHQELPDNSIAVNGALSEAPVHLSHDADYSPFHPSHSHEEQP---------YNHNEASAEHNPSLSKQQYRQQ--------------LKPVPQRHSEMNNQTL-----LPKKRR-SSRRKPYRCGYCHSLGHNQKTCPDRPPHL---GRATNSKSLTSAQIQPI--KVSDEIATLFLESAAATCTDDAQTAQHITSDTVLELVNKRITDASYAVASATTDTNYHDAITQLQAAVLLYEKVAFLVRRGIFPAQIISRDTEEP 284
The following BLAST results are available for this feature:
BLAST of Ggra9023.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3INK51.160e-3332.87Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 240..260
NoneNo IPR availableGENE3D4.10.60.10coord: 141..195
e-value: 5.1E-5
score: 25.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..157
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 147..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1269981..1271291 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9023.t1Ggra9023.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 1269981..1271291 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9023.t1 ID=Ggra9023.t1|Name=Ggra9023.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MLSQELQTPAQITVWSEGAFNTGRHKLHIAANDDGDIVADAHRRLPDHMI
VATDSASITPVALPLEHGYASFQTEQTEQVENAGANAMHADFDHHVADEE
QENTATRNHRQVQQHQSHEQHTAPEQSLQQQQVAQTEVTAESVGVSRDTP
RKRSGSNRRKRYRCGYCHELGHNQKTCPIRPPHLPTRSQAHRTSIQDTAQ
LQLVAAKVAEELSRMFFEMTNAHSGDEWQPPQQISYDTVLEAANKEVMQA
NQSVADATTDQEFDNAIDNLQSAVCMLEKVAVLIYKSAALAHTMSRSVED
PF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf