Ggra9021.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9021.t2
Unique NameGgra9021.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length150
Homology
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BLAST of Ggra9021.t2 vs. uniprot
Match: A0A2V3IID8 (Ty3_capsid domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IID8_9FLOR)

HSP 1 Score: 112 bits (281), Expect = 8.930e-28
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 0 
Query:   13 KQNGSVASYISSFRNIVLTIPDMSSSEKWDKFVSGLKPKIQFEVRKANCQEFEEATKIAMRVEEAFSGVSMPSSSSTASNETAERAGSTIVPMEIGNTQLATSAK--SKQRLQDIRNNACFKCHKPGCRPWKHRNG 146
            KQ  SVA Y+S FRNIV+ IP +S SEK  +F  GLKP I  EV+KA+ + FEEA KIA+ +  AF G    S+     N T  + G   VPMEIGN Q   + +  S ++++D++NNA F  HKPGC PWK +NG
Sbjct:  105 KQRTSVAIYLSDFRNIVIEIPGISDSEKLARFTEGLKPHILLEVQKASPKMFEEAAKIALYINGAFYGAGFFSNRGFGFN-TGFQTGP--VPMEIGNVQRQNNLREISSEKMRDLKNNASFLSHKPGCLPWKPKNG 237
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BLAST of Ggra9021.t2 vs. uniprot
Match: A0A7S3A6S2 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A6S2_9RHOD)

HSP 1 Score: 54.7 bits (130), Expect = 4.950e-6
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 0 
Query:   14 QNGSVASYISSFRNIVLTIPDMSSSEKWDKFVSGLKPKIQFEVRKANCQEFEEATKIAMRVEEAFSGVSMPSSSSTASNETAERAGSTIVPMEIGNTQLATSAKSKQRLQDIR-----NNACFKCHKPG 137
            Q  SVA+Y S F   ++ + ++S SEK+D+FV GLKP+++  +   + Q FEEA  +A+++E    G  + S   T  +   ER     +P   G     +  K + ++Q++R     N  C  C K G
Sbjct:  105 QRTSVAAYTSYFNKCLIQVGEISESEKFDRFVEGLKPEVKKYIYIQDVQCFEEAQALALKIE----GAEIASHGLTRESRGPERP----IPTSSGTR---SGRKYQPQIQELRTGKYFNIVCNYCGKKG 222
The following BLAST results are available for this feature:
BLAST of Ggra9021.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IID88.930e-2848.53Ty3_capsid domain-containing protein n=1 Tax=Graci... [more]
A0A7S3A6S24.950e-631.01Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR045358Ty3 transposon capsid-like proteinPFAMPF19259Ty3_capsidcoord: 13..86
e-value: 7.8E-8
score: 32.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1182432..1182881 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t2Ggra9021.t2Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 1182432..1182881 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9021.t2 ID=Ggra9021.t2|Name=Ggra9021.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=150bp
MNVVLEMLSVSCKQNGSVASYISSFRNIVLTIPDMSSSEKWDKFVSGLKP
KIQFEVRKANCQEFEEATKIAMRVEEAFSGVSMPSSSSTASNETAERAGS
TIVPMEIGNTQLATSAKSKQRLQDIRNNACFKCHKPGCRPWKHRNGSYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR045358Ty3_capsid