Ggra9021.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9021.t2
Unique NameGgra9021.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1182432..1182881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI54953
PFAMsRetrotrans_gag,zf-CCHC
Max annot lvl4776|Peronosporales
Evalue6.23e-08
EggNOG OGs2D6B7@1|root,2T1E5@2759|Eukaryota,3QFRT@4776|Peronosporales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9021Ggra9021Gracilaria gracilis GNS1m malegenetig00000860_pilon 1182432..1186462 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t2.start1Ggra9021.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1182432..1182434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t2.CDS1Ggra9021.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1182432..1182881 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t2.exon1Ggra9021.t2.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1182432..1182881 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t2.stop1Ggra9021.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1182879..1182881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t2Ggra9021.t2Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1182432..1182881 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9021.t2 ID=Ggra9021.t2|Name=Ggra9021.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=150bp
MNVVLEMLSVSCKQNGSVASYISSFRNIVLTIPDMSSSEKWDKFVSGLKP
KIQFEVRKANCQEFEEATKIAMRVEEAFSGVSMPSSSSTASNETAERAGS
TIVPMEIGNTQLATSAKSKQRLQDIRNNACFKCHKPGCRPWKHRNGSYG*
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spliced messenger RNA

>Ggra9021.t2 ID=Ggra9021.t2|Name=Ggra9021.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000860_pilon:1182432..1182881+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTCGTGCTCGAGATGCTCTCCGTTTCGTGCAAGCAAAATGGATC
TGTTGCTTCATATATTTCGAGTTTCCGCAATATTGTTCTGACTATTCCTG
ATATGAGTTCAAGCGAGAAGTGGGACAAGTTTGTAAGTGGCCTGAAACCC
AAGATTCAGTTTGAGGTACGAAAGGCAAACTGTCAGGAATTTGAGGAGGC
AACAAAAATTGCGATGCGGGTGGAAGAAGCATTCTCTGGGGTATCCATGC
CATCTTCCTCATCGACTGCATCAAACGAGACTGCAGAACGAGCAGGTTCT
ACGATTGTCCCCATGGAGATTGGTAACACTCAGTTAGCCACCTCAGCAAA
GAGCAAGCAGCGACTACAAGATATTCGTAACAACGCTTGCTTCAAGTGCC
ATAAGCCGGGTTGCCGTCCATGGAAGCACCGTAATGGATCATATGGGTAG
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protein sequence of Ggra9021.t2

>Ggra9021.t2 ID=Ggra9021.t2|Name=Ggra9021.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=150bp
MNVVLEMLSVSCKQNGSVASYISSFRNIVLTIPDMSSSEKWDKFVSGLKP
KIQFEVRKANCQEFEEATKIAMRVEEAFSGVSMPSSSSTASNETAERAGS
TIVPMEIGNTQLATSAKSKQRLQDIRNNACFKCHKPGCRPWKHRNGSYG*
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mRNA from alignment at tig00000860_pilon:1182432..1182881+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9021.t2 ID=Ggra9021.t2|Name=Ggra9021.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000860_pilon:1182432..1182881+ (Gracilaria gracilis GNS1m male)
ATGAACGTCGTGCTCGAGATGCTCTCCGTTTCGTGCAAGCAAAATGGATC
TGTTGCTTCATATATTTCGAGTTTCCGCAATATTGTTCTGACTATTCCTG
ATATGAGTTCAAGCGAGAAGTGGGACAAGTTTGTAAGTGGCCTGAAACCC
AAGATTCAGTTTGAGGTACGAAAGGCAAACTGTCAGGAATTTGAGGAGGC
AACAAAAATTGCGATGCGGGTGGAAGAAGCATTCTCTGGGGTATCCATGC
CATCTTCCTCATCGACTGCATCAAACGAGACTGCAGAACGAGCAGGTTCT
ACGATTGTCCCCATGGAGATTGGTAACACTCAGTTAGCCACCTCAGCAAA
GAGCAAGCAGCGACTACAAGATATTCGTAACAACGCTTGCTTCAAGTGCC
ATAAGCCGGGTTGCCGTCCATGGAAGCACCGTAATGGATCATATGGGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1182432..1182881+

>Ggra9021.t2 ID=Ggra9021.t2|Name=Ggra9021.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=450bp|location=Sequence derived from alignment at tig00000860_pilon:1182432..1182881+ (Gracilaria gracilis GNS1m male)
ATGAACGTCGTGCTCGAGATGCTCTCCGTTTCGTGCAAGCAAAATGGATC
TGTTGCTTCATATATTTCGAGTTTCCGCAATATTGTTCTGACTATTCCTG
ATATGAGTTCAAGCGAGAAGTGGGACAAGTTTGTAAGTGGCCTGAAACCC
AAGATTCAGTTTGAGGTACGAAAGGCAAACTGTCAGGAATTTGAGGAGGC
AACAAAAATTGCGATGCGGGTGGAAGAAGCATTCTCTGGGGTATCCATGC
CATCTTCCTCATCGACTGCATCAAACGAGACTGCAGAACGAGCAGGTTCT
ACGATTGTCCCCATGGAGATTGGTAACACTCAGTTAGCCACCTCAGCAAA
GAGCAAGCAGCGACTACAAGATATTCGTAACAACGCTTGCTTCAAGTGCC
ATAAGCCGGGTTGCCGTCCATGGAAGCACCGTAATGGATCATATGGGTAG
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