Ggra8998.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra8998.t1
Unique Name	Ggra8998.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	106

Homology

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BLAST of Ggra8998.t1 vs. uniprot
Match: A0A2V3ID46 (Oxygen-dependent coproporphyrinogen-III oxidase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID46_9FLOR)

HSP 1 Score: 157 bits (397), Expect = 5.440e-45
Identity = 76/101 (75.25%), Postives = 86/101 (85.15%), Query Frame = 0

Query:    3 DSLLPAYLPLLGARGVDVAVADWQGFELSRAPGEDGAFGDETVETFCISGGASCESTTLRANPLGSWRFSLAPSSLTAAGKVYDTLRSDGRSASPSLLYID 103
            D+LLP+YLPLL  RG D+A  DW+G E+  A  E GAFG+ETVETFCISGGASCESTTLRANPLGSWRFSLAPS++TAAG+VYD LRSD R A PSL+YID
Sbjct:  246 DTLLPSYLPLLEGRGHDIAFEDWKGHEVGEALTETGAFGNETVETFCISGGASCESTTLRANPLGSWRFSLAPSTMTAAGRVYDALRSDKRGARPSLVYID 346

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BLAST of Ggra8998.t1 vs. uniprot
Match: R7Q732 (Coproporphyrinogen oxidase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q732_CHOCR)

HSP 1 Score: 94.7 bits (234), Expect = 5.930e-21
Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 0

Query:    3 DSLLPAYLPLL-----GARGVDVAVADWQ----GFELSRAPGEDGAFGDETVETFCISGGASCESTTLRANPLGSWRFSLAPSSLTAAGKVYDTLRSDGRSASPSLLYI 102
            D+LLPAYLPLL     G+R     + DW+    G  L     E   FG E ++TF ISGGA+CES T+R +PLGSWRFSLAPS  TAAGK Y TLR+D  + +  L +I
Sbjct:  248 DALLPAYLPLLRARKRGSRFESEMLHDWEPVWGGLGLGGTDVER-RFGKEEIDTFGISGGATCESVTVRGSPLGSWRFSLAPSMFTAAGKTYATLRNDHGNINGPLTHI 355

The following BLAST results are available for this feature:

BLAST of Ggra8998.t1 vs. uniprot

BLAST of Ggra8998.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3ID46	5.440e-45	75.25	Oxygen-dependent coproporphyrinogen-III oxidase n=...	[more]
R7Q732	5.930e-21	51.38	Coproporphyrinogen oxidase n=1 Tax=Chondrus crispu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..105
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..23

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1090653..1090970 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8998.t1	Ggra8998.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000860_pilon 1090653..1090970 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra8998.t1 ID=Ggra8998.t1|Name=Ggra8998.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=106bp
MFDSLLPAYLPLLGARGVDVAVADWQGFELSRAPGEDGAFGDETVETFCI
SGGASCESTTLRANPLGSWRFSLAPSSLTAAGKVYDTLRSDGRSASPSLL
YIDFL*