Ggra8997.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8997.t1
Unique NameGgra8997.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length709
Homology
BLAST of Ggra8997.t1 vs. uniprot
Match: R7QNH5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNH5_CHOCR)

HSP 1 Score: 479 bits (1233), Expect = 5.160e-157
Identity = 276/673 (41.01%), Postives = 407/673 (60.48%), Query Frame = 0
Query:   22 LPSLPVDAPAFAALVNGHLHQLHRQHDAHLSHGADLPLRHVRHAALTLRRAAALHLALLQIESLPPPPDDDARVCASR-RYLRGVRTRLQAAVVMPDVNALQVLVHSAGAVLDGFLMDSAGVF---EPVVVDERSNA-----LDVPLPRARAKRRSDMVASXXXXXXXXXXXXXXFPSMHD-------------GMEQPRLAYRPSIFGWSLRESRSSAP--GTRKWR-KCCGLSWTDLSTRDRMVLWLYVLMVLGALIAVAAVTTTFIQQAVTPGSFIRSTSGEQLMSPVVTACLSQRGVPFSRLQLFDFVDAEQRSFAGTVPEAQFGEQQNIDAFKGVVERFWDNPDGEDCDAKVGDYFPFPLRSLNDIASGKSSTRCRQCYRVGRKHEAVVRDTSFENSSVLHLFTDSYFLQCMKSQSGLDDRSLEFLHGVIAQNAAELQELNILSV-ANGGNVTQLGEEDIEAILWQQACNLFYFAYFPIKQNKRDDSVDIRYQFNGTAWEAVGNGPYFEPKVSPNFLPEESLQLFVSTNSTTRAGQLGQQQDVILIGPDTQTFATFRPVVVYGVDRYDISSSTSGLRNEMVVARLGYWLRYKVFYNYNRFVVDEYYRESTYPVGQWIVDLTGYATLFTGASVFSLLLLPLLRTVRKREKVRLLRRGPEVYVWSRARRQ 668
            L SLP +  AF    N +L  L  QHD++LS GADL + H    A T+RRA  ++ A   I  +P     ++    +   YLRG+ +RL  A+   +   L+ LV +A A LD       G+F   + V V + S A      D+P         SD V                 PS+H+              ++  R A  PS+   ++  S  + P  G RK +   C  ++ +LS++++++LW+Y+L++L ++I +A VT  F ++ + P SFIR+   + L +PVVT CLSQRG+PFSRLQL++F DA+  +F G  P+    ++Q+ + F+ VV+RFWDNP  EDC+  VGD++PFPL SLN + SG+ +++CR CYRVGRK   +   T F +SS+L L+TD+YFLQCMKS + LD+RSL F HG + +   +++EL +LS   +   V  L  E  E I  +Q CN+FYF +FP   N     VDI+Y ++G+ W  VG GPYF+ K + + LPEESLQ+FV  N +T   ++G+  D++L+GP+TQT+A+F+PV+ Y  +R+DISSST+ LR + V    GYWL Y+V+YN+NRFVV+E+Y +STYP GQW VD++GYA+LFTGAS+ SL+  PL R  ++RE  RL+   PE Y WS  +++
Sbjct:    4 LTSLP-EPQAFVDDANLYLQSLSVQHDSNLSAGADLDVLHTTRLARTIRRATLIYAASFDI--IPAVAQRESHQGNNTANYLRGLISRLSTALKDRNDAELETLVDAATAELDACKEGEQGIFTTLQVVTVSKGSGAELDWLSDIPNDPDAENSVSDAVV-----VQDSSENALALPSLHNKNRAKRNSGGFRSSLQLKRDASGPSM---TILTSGQTPPRGGQRKQKYPSCFATYGNLSSKEKLLLWVYILLLLASVIPIAVVTVDFTKKQINPESFIRTQVSDSLPAPVVTICLSQRGIPFSRLQLYNFTDAQGVNFRGADPKGPQTDRQSPE-FEAVVDRFWDNPGNEDCNKTVGDFYPFPLESLNQLTSGEKNSQCRPCYRVGRK-TVMATSTDFRDSSILDLYTDNYFLQCMKSINTLDNRSLTFWHGQLNEKKKKMEELGVLSSQVDNVKVADLELEQFEKIDSEQGCNIFYFGFFPKLLNTGTGGVDIKYAWDGSTWNPVGKGPYFKLKTTEDLLPEESLQMFVGRNVSTEENKVGENLDMLLLGPNTQTYASFQPVIDYDGERFDISSSTTNLRQDEVTPIFGYWLVYRVYYNFNRFVVEEHYLDSTYPAGQWFVDVSGYASLFTGASLLSLIFFPLWRARQRREDRRLMHERPEAYYWSEHKKR 663          
BLAST of Ggra8997.t1 vs. uniprot
Match: A0A1X6P7J0 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P7J0_PORUM)

HSP 1 Score: 268 bits (685), Expect = 1.240e-75
Identity = 160/432 (37.04%), Postives = 241/432 (55.79%), Query Frame = 0
Query:  235 LSTRDRMVLWLYVLMVLGALIAVAAVTTTFIQQAVTPGSFIRSTSGEQLMSPVVTACLSQRGVPFSRLQLFDFVDAEQRSFAGTVPEAQFGEQQNIDAFKGVVERFWDNPDGEDCDAKVGDYFPFPLRSLNDIASGKSSTRCRQCYRVGRKH-EAVVRDTSFENSSVLHLFTDSYFLQCMKSQSGLDDRSLEFLHGVI--AQNAAELQELNILSVANGGNV-----TQLGEEDIEAILWQQACNLFYFAYFPIKQNKRDDSV----DIRYQFNGTAWEAVGNGPYFEPKVSPNFL---PEESLQLFVST-NSTTRAGQLGQQQDVILIGPDTQTFATFRPVVVYGVDRYDISSSTSGLRNEMVVARL-GYWLRYKVFYNYNRFVVDEYYRESTYPVGQWIVDLTGYATLFTGASVFSLLLLPLLRTVRKREK 649
            +S    +V +LY L+ + ++ A+  +T  F      P S I      +L  P VT C +Q GVP  RLQ F++ DA      G +P  +FG  +    F+ VVERFWDNPDGEDCD   G++FP P+R+L  I++G+ ST+CR C+R G K  E + R T+F  ++ + L+TD  F QCM   +G+DD + + +   +  A  AAE      L+  +   V     T    + I A+  ++ CN+ YFA  P++ N   DSV    DI+Y F+GT W   G+GPYF P+         PEE LQ+F++  ++    G +    D  L+GP+++    F    V    R+ ISS +S  R  + +A   GYWL+Y V  +Y  FV ++     TYPV QW+VD+ GY  LFTGAS+FS++++PLL+ +R+R++
Sbjct:  273 VSKTASVVTFLYFLLAIASIAAIVFITVQFANDVRNPESGIELVRHTELAMPTVTVCSTQTGVPLRRLQFFNYTDAAGVRVGGPLPFQKFGTTE----FEAVVERFWDNPDGEDCDRICGNFFPLPVRTLQQISNGELSTKCRPCFRTGSKGPEVIARSTAFSAAAFMELYTDHAFFQCMFRANGVDDPAQDEMRLTVGKADFAAEFFGATPLAPGDPTPVLTVPATSTRVDAIAALGSEELCNVLYFAVLPVRLN---DSVPLDADIKYTFDGTGWTRTGDGPYFVPRTEGQVQTGSPEEGLQVFITARDAPLPPGGVTSLADTALLGPNSEVAILFNRRQVDDKPRFAISSISSSNRLVVNIADWSGYWLQYAVHLSYATFVEEQLRDVHTYPVTQWLVDVAGYIGLFTGASLFSIMVVPLLQLLRRRDR 697          
BLAST of Ggra8997.t1 vs. uniprot
Match: A0A1X6P7D7 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P7D7_PORUM)

HSP 1 Score: 224 bits (572), Expect = 2.190e-62
Identity = 144/386 (37.31%), Postives = 202/386 (52.33%), Query Frame = 0
Query:  286 PVVTACLSQRGVPFSRLQLFDFVDAEQRSFAGTVPEAQFGEQQNIDAFKGVVERFWDNPDGEDCDAKVGDYFPFPLRSLNDIASGKSSTRCRQCYRVGRKHEAVVRD-TSFENSSVLHLFTDSYFLQCMKSQSGLDDRSLEFLHGVIAQ--NAAEL--QELNILSVANGGN----VTQLGEEDIEAILWQQACNLFYFAYFPIK----QNKRDDSVDIRYQFNGTA-WEAVGNGPYFEPKVSPNF------LPEESLQLFVSTNSTTRA-GQLGQQQDVILIGPDTQTFATFRPVVVYGVDRYDISSSTSGLRNEMVVARL-GYWLRYKVFYNYNRFVVDEYYRESTYPVGQWIVDLTGYATLFTGASVFSLLLLPLLRTVRKREK 649
            P+VT C +Q GVP  RLQ F +  A   + AG  P+          AF+  V+RFWDNP GEDC A  GD++P PL SL  IA+G  +TRCR C++ G K E VV + T+F  ++ + L+TD  F QCM    G+D   LE +   +A   N AE       +L+V  G      V  LG  ++        CN+ YFA  P +       R D   I Y +     W   G+GPYF   VSP         PEE LQ+F+S        G +    D  L+GP+++    F     +G  R+ ISS +S  R  + +A   GYWL+Y +  +Y  FV +      TYPV QW+VD+ GY  LFTGAS+FS++++PLL+ +R+R++
Sbjct:    2 PLVTVCSTQTGVPLRRLQFFSYRAANGVTAAGPRPDGSPASP----AFEAAVDRFWDNPGGEDCGAVAGDFWPLPLGSLQAIAAGTRATRCRPCFQTGGKGEPVVAESTAFSRAAFMELYTDHAFFQCMFRAGGVDADGLESMRASVADPANTAEFFGGPTPVLTVGPGATQAAAVADLGSAEL--------CNVLYFAVLPRRLLDAAANRTDLPAIAYTYGADGGWAQAGDGPYF---VSPTAEQVRVGSPEEGLQVFISERGRPLPPGGITSLSDTALLGPNSEASLLFTRRREFGRPRFAISSISSSNRLRVNIADFNGYWLQYALHLSYASFVEEVVKDIHTYPVTQWLVDVAGYVGLFTGASLFSIMVMPLLQLLRRRDR 372          
The following BLAST results are available for this feature:
BLAST of Ggra8997.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7QNH55.160e-15741.01Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P7J01.240e-7537.04Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6P7D72.190e-6237.31Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 620..641
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..242
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 642..708
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 266..619
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 243..265
NoneNo IPR availableSUPERFAMILY101447Formin homology 2 domain (FH2 domain)coord: 11..21
NoneNo IPR availableTMHMMTMhelixcoord: 243..265
NoneNo IPR availableTMHMMTMhelixcoord: 622..644

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1084326..1086452 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8997.t1Ggra8997.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 1084326..1086452 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8997.t1 ID=Ggra8997.t1|Name=Ggra8997.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=709bp
MSFSTARAPPPPPPPPPPPPPLPSLPVDAPAFAALVNGHLHQLHRQHDAH
LSHGADLPLRHVRHAALTLRRAAALHLALLQIESLPPPPDDDARVCASRR
YLRGVRTRLQAAVVMPDVNALQVLVHSAGAVLDGFLMDSAGVFEPVVVDE
RSNALDVPLPRARAKRRSDMVASSSSLQDDDMLPPPPFPSMHDGMEQPRL
AYRPSIFGWSLRESRSSAPGTRKWRKCCGLSWTDLSTRDRMVLWLYVLMV
LGALIAVAAVTTTFIQQAVTPGSFIRSTSGEQLMSPVVTACLSQRGVPFS
RLQLFDFVDAEQRSFAGTVPEAQFGEQQNIDAFKGVVERFWDNPDGEDCD
AKVGDYFPFPLRSLNDIASGKSSTRCRQCYRVGRKHEAVVRDTSFENSSV
LHLFTDSYFLQCMKSQSGLDDRSLEFLHGVIAQNAAELQELNILSVANGG
NVTQLGEEDIEAILWQQACNLFYFAYFPIKQNKRDDSVDIRYQFNGTAWE
AVGNGPYFEPKVSPNFLPEESLQLFVSTNSTTRAGQLGQQQDVILIGPDT
QTFATFRPVVVYGVDRYDISSSTSGLRNEMVVARLGYWLRYKVFYNYNRF
VVDEYYRESTYPVGQWIVDLTGYATLFTGASVFSLLLLPLLRTVRKREKV
RLLRRGPEVYVWSRARRQVGMVGGDDGGGMGGGAMAVEEDDALGTRRGSS
VLLPGLNM*
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