Ggra8978.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8978.t1
Unique NameGgra8978.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length141
Homology
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BLAST of Ggra8978.t1 vs. uniprot
Match: A0A2V3IJ84 (Thioredoxin domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ84_9FLOR)

HSP 1 Score: 87.8 bits (216), Expect = 2.440e-20
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 0 
Query:   70 PFERMAAEFGDSVLFVSVCADEQHADVQYALLRELGIRSFPTFVLFNGGKRVDHFSTSCADTLRQHVQDWL 140
            PFERMA EF   V FV  CA+E  AD    ++R+LG+RSFPTFVL+  G+R+DHF+TSC++TLR+H++D L
Sbjct:    3 PFERMATEFKREVCFVQACAEEG-AD----MMRDLGVRSFPTFVLYRDGRRMDHFATSCSETLREHIEDSL 68
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BLAST of Ggra8978.t1 vs. uniprot
Match: Q7XY77 (Thioredoxin n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY77_GRIJA)

HSP 1 Score: 84.0 bits (206), Expect = 9.690e-18
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0 
Query:   51 LTVVKVYSRRCRSCMRIARPFERMAAEFGDSVLFVSVCADEQHADVQYALLRELGIRSFPTFVLFNGGKRVDHFSTSCADTLRQHVQD 138
            L V+KVYSR CRSC RI RPF R+A  + + V    + A++        L + LG+R FPTFVL+  G+RVDHF++SC + L + ++D
Sbjct:   80 LLVLKVYSRGCRSCKRIERPFARVAKAYSNVVTCAQLRAEDNEQ-----LAQTLGVRGFPTFVLYKNGERVDHFASSCPEVLVETIED 162
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BLAST of Ggra8978.t1 vs. uniprot
Match: A0A1X6NMX5 (Thioredoxin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NMX5_PORUM)

HSP 1 Score: 72.0 bits (175), Expect = 7.650e-13
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0 
Query:   46 GSAYELTVVKVYSRRCRSCMRIARPFERMAAEFGDSVLFVSVCADEQHADVQYALLRELGIRSFPTFVLFNGGKRVDHFSTSCADTLRQHV 136
            G    L V++VY+  CR+C  IAR F R+     +++   S      +ADV   L+R LG+R  PTFVLF GG R+DHF     D L + V
Sbjct:  110 GGRPPLVVLEVYATHCRACKGIARAFTRVCEVHREAIFLAS------NADVDDELMRRLGVRGTPTFVLFRGGVRIDHFYAKDRDALEEQV 194
The following BLAST results are available for this feature:
BLAST of Ggra8978.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IJ842.440e-2057.75Thioredoxin domain-containing protein n=1 Tax=Grac... [more]
Q7XY779.690e-1845.45Thioredoxin n=1 Tax=Griffithsia japonica TaxID=832... [more]
A0A1X6NMX57.650e-1340.66Thioredoxin domain-containing protein n=1 Tax=Porp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 25..140
e-value: 4.9E-16
score: 60.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableCDDcd02947TRX_familycoord: 36..125
e-value: 2.1951E-14
score: 62.1905
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 50..136
e-value: 1.9E-9
score: 37.4
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 10..140
score: 9.080061
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 34..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1039911..1040333 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8978.t1Ggra8978.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 1039911..1040333 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8978.t1 ID=Ggra8978.t1|Name=Ggra8978.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=141bp
MTVSTPPPPPTPPPPTPPPPPPPSQRQQPLTATNIAEMRQLVEGSGSAYE
LTVVKVYSRRCRSCMRIARPFERMAAEFGDSVLFVSVCADEQHADVQYAL
LRELGIRSFPTFVLFNGGKRVDHFSTSCADTLRQHVQDWL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR036249Thioredoxin-like_sf