Ggra8965.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8965.t1
Unique NameGgra8965.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Homology
BLAST of Ggra8965.t1 vs. uniprot
Match: M2XWN0 (SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XWN0_GALSU)

HSP 1 Score: 81.6 bits (200), Expect = 5.450e-14
Identity = 74/271 (27.31%), Postives = 112/271 (41.33%), Query Frame = 0
Query:    9 RLSRALGERMYLIQQLAADDDHXXXXXXXXXGKPRTSFLVTGQSGKLYTVSFPTRADDXXXXXXXXXXXXXXXXXXXEAARCNCMDHVIRKTVCKHILFIATRVLHAPRSWFASDADARGAPA-LQRAARLVSPLLARSGSSGSGIGSGSSAAPEAVRLAVQRAAPH----------AFASATRVSRKRVEEEDECGICFERLL----AEALSFCAFGCGRAVHAACFARYE--QATRG-DARCVLCRAQWRRDARQRVGRRGVLARGRLI 261
            RL RA  +R+YL+    ++            G P  SF + G +G +YTV F +                          +CNC+DH +RKT+CKH++F+  R+L  P         + G+ + LQR  R V+ L+                  +   +A Q               +F+S  +    R EE  EC ICFE       AE + +C +GCG AVH  CF ++   +   G +  CV CR  W +    +   R +L+  RLI
Sbjct:    5 RLERAKKQRLYLLAVTNSE-----------VGSP--SFAILGSTGNVYTVWFQSGCP-----------------------KCNCIDHRVRKTLCKHVIFVLLRILKVPEEQIEKFCSSCGSESELQRYLRNVTLLV------------------DTQYIAPQNTVEDFKSIVGDLDGSFSSLRKPPVPRREENTECPICFENFSTEEGAEPILYCKWGCGNAVHKDCFDKWSCSKVEAGQEVTCVYCRTPWEKTEGSKKETRQILSGRRLI 221          
BLAST of Ggra8965.t1 vs. uniprot
Match: E9E6P4 (RING-finger protein n=1 Tax=Metarhizium acridum (strain CQMa 102) TaxID=655827 RepID=E9E6P4_METAQ)

HSP 1 Score: 66.2 bits (160), Expect = 1.540e-8
Identity = 59/237 (24.89%), Postives = 87/237 (36.71%), Query Frame = 0
Query:   12 RALGERMYLIQQLAADDDHXXXXXXXXXGKPRTSFLVTGQSGKLYTVSFPTRADDXXXXXXXXXXXXXXXXXXXEAARCNCMDHVIRKTVCKHILFIATRVLHAPRSWFASDADARGAPALQRAARLVSPLLARSGSSGSGIGSGSSAAPEAVRLAVQRAAPHAFASATRVSRKRVEEEDECGICF---ERLLAEALSFCAFGCGRAVHAACFARYEQATRGDARCVLCRAQWRRDA 245
            RAL +R Y++Q+     +            P   F +TG +G +YTV                           +   C+C  H ++   CKH+++I +RVLHAP                     LV  L   SG   S      S +PE                    S KR + E EC ICF   +    E++ +C   CG+ +H  CF  + +   GD  C  CR +W  D+
Sbjct:   90 RALSQRFYVLQRTPCGTEEC----------PEEIFKMTGSTGNIYTVHIK------------------------QQPTCDC-PHALQGNQCKHVIYILSRVLHAPYE-------------------LVYQLALLSGELRSIFAKAPSRSPEK----------------ESESGKRKDVEGECPICFCAFDTQSPESIVWCKAACGQNIHQVCFQMWAKTKTGDVTCPFCRGKWETDS 256          
BLAST of Ggra8965.t1 vs. uniprot
Match: A0A7S1SL43 (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SL43_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 3.010e-7
Identity = 50/161 (31.06%), Postives = 69/161 (42.86%), Query Frame = 0
Query:   87 AARCNCMDHVIRKTVCKHILFIATRVLHAPRSWFASDADARGAPALQRAARLVSPLLARSGSSGSGIGSGSSAAPEAVRLAVQRAAPHAFASATRVSRKRVEEEDECGIC---FERLLAEALSFCAFGCGRAVHAACF---ARYEQATRGDARCVLCRAQW 241
            A  C C+DH IRKT CKHILF+  R L   +    +  +     A+  +A     L A          +G+       R  V        A A  V ++ V+ E+ C IC   F       L FC F CG+++H ACF   A +++  R    CV CR  W
Sbjct:    4 APHCTCLDHRIRKTTCKHILFVLMRALGLRKEELLNGVEW----AVVESAAGEDGLFAVDAEYDVDDDAGNVVERPKKRRKVT-------AVAREVKQRPVDGEESCPICCCDFGENSQAPLVFCRFSCGKSLHLACFKKMAAFQRRARAPLLCVYCRHPW 153          
The following BLAST results are available for this feature:
BLAST of Ggra8965.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
M2XWN05.450e-1427.31SWIM zinc finger family protein / mitogen-activate... [more]
E9E6P41.540e-824.89RING-finger protein n=1 Tax=Metarhizium acridum (s... [more]
A0A7S1SL433.010e-731.06Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 181..250
e-value: 7.3E-8
score: 33.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 275..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..82
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 186..245
IPR039903E3 ubiquitin-protein ligase Zswim2PANTHERPTHR21540RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2coord: 89..301
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 56..113
score: 8.295639
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 193..238
score: 9.317383

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:987824..988858 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8965.t1Ggra8965.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 987824..988858 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8965.t1 ID=Ggra8965.t1|Name=Ggra8965.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MADKTESTRLSRALGERMYLIQQLAADDDHDHDHDHDHDGKPRTSFLVTG
QSGKLYTVSFPTRADDDKDDDDEDDEDDGGGGGGGEAARCNCMDHVIRKT
VCKHILFIATRVLHAPRSWFASDADARGAPALQRAARLVSPLLARSGSSG
SGIGSGSSAAPEAVRLAVQRAAPHAFASATRVSRKRVEEEDECGICFERL
LAEALSFCAFGCGRAVHAACFARYEQATRGDARCVLCRAQWRRDARQRVG
RRGVLARGRLIDVSEVLPELFAAPPPAPAASKPRARAARNKPRANSAAQK
AGLVPHRGAVTKRSGAVRKRAAERSRVRRARAHGMTLRSASRAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR039903Zswim2
IPR007527Znf_SWIM
IPR001841Znf_RING