Ggra8959.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8959.t1
Unique NameGgra8959.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Homology
BLAST of Ggra8959.t1 vs. uniprot
Match: A0A2V3INL6 (Ribosome-recycling factor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INL6_9FLOR)

HSP 1 Score: 303 bits (775), Expect = 1.890e-101
Identity = 164/232 (70.69%), Postives = 187/232 (80.60%), Query Frame = 0
Query:    2 AFCFTGLPLSPTWTHSPVHHTFSRPNSLRLPRASRSRLHAPEIRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV 233
            AFC T +P      +  V H  SRP SLRL R+ RSR++ P IR ELT+NETA KSEERM KT+DS+Q+NFNTVRTGRA+PSILDRV+VSYYG +TPLNQLASVS+SGTSTL VEPYDK+ + DVE+A++QSDVGITPNSDGSKIRL VPQLTEERRK+L KQVKAI+EE R+AIRNIRRDAVDALKK EKK+ LGKDESMTMQDEVQK               KE+DIMKV
Sbjct:    5 AFCVTSVPCGLGLRYDIVRHGISRPQSLRLSRSHRSRIYTPTIRSELTQNETAKKSEERMNKTIDSVQTNFNTVRTGRASPSILDRVLVSYYGADTPLNQLASVSVSGTSTLVVEPYDKNAIQDVEKAIMQSDVGITPNSDGSKIRLAVPQLTEERRKELAKQVKAIAEEGRIAIRNIRRDAVDALKKQEKKNNLGKDESMTMQDEVQKXXXXXXXXXXXXXXQKEADIMKV 236          
BLAST of Ggra8959.t1 vs. uniprot
Match: Q7XY97 (Ribosome recycling factor n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY97_GRIJA)

HSP 1 Score: 271 bits (693), Expect = 4.500e-89
Identity = 137/194 (70.62%), Postives = 172/194 (88.66%), Query Frame = 0
Query:   40 HAPEIRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV 233
            H   + CELT+N+TA KSE RM+KT+DS++S FN+VRTGRA+PS+LDR+ V+YYG +TPLN LA+VS+SGTSTL VEPYDKSC+ D+ER+L++SD+G+TPNSDGS IRL++PQLT+ERR QLVKQVK+++E+ RVAIRNIRRDAVD++KKLEKKSELGKDES T+QD VQKLT+KYVK I+ + K KE DIMKV
Sbjct:   37 HPLPVVCELTENDTAEKSEARMQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSLATVSVSGTSTLVVEPYDKSCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMAEDGRVAIRNIRRDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESVYKQKEEDIMKV 230          
BLAST of Ggra8959.t1 vs. uniprot
Match: R7QEJ9 (Ribosome-recycling factor RRF, Rhodoplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEJ9_CHOCR)

HSP 1 Score: 271 bits (692), Expect = 1.090e-88
Identity = 145/217 (66.82%), Postives = 183/217 (84.33%), Query Frame = 0
Query:   17 SPVHHTFSRPNSLRLPRASRSRLHAPEIRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV 233
            +P  H FS   S R  + S S+ +   +RCELT+NET  ++ +RM KT+DS+QS F+TVRTGRA+ S++DRVMVSYY  ETPLNQLASVS+SGTST+ VEPYDKSC+ DVER +++SDVGITPN+DGS IRL+VP LTE+RRK+LVKQVK ++EE RVA+RNIRRDAVD+LKKLEKK ELGKDES T+Q EVQK+T+K+VK+ID++LK KE+DI+KV
Sbjct:   32 APQRHGFS--TSTRRLQHSPSQSNPSSVRCELTQNETGKETTDRMGKTLDSVQSAFSTVRTGRASTSMVDRVMVSYYDVETPLNQLASVSLSGTSTILVEPYDKSCMGDVERGIMESDVGITPNNDGSCIRLSVPPLTEDRRKELVKQVKGLAEEGRVALRNIRRDAVDSLKKLEKKKELGKDESKTLQSEVQKITDKHVKRIDELLKQKEADILKV 246          
BLAST of Ggra8959.t1 vs. uniprot
Match: A0A7S1TJD3 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TJD3_9RHOD)

HSP 1 Score: 227 bits (579), Expect = 5.540e-72
Identity = 113/201 (56.22%), Postives = 161/201 (80.10%), Query Frame = 0
Query:   33 RASRSRLHAPEIRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV 233
            RA+  R+     R  ++  + A  SEERMKK+++++ ++FNT+RTGRANP+ILDRVMVSYYG ETPL QLASVS   ++ + ++ +DKSC+ D+ERA+++SD+G+TP++DG+ IRL +P LT++RRK++VKQ+K ++EE RVA+RNIRRD VD +K LEK S++GKDES   QDE+QKLT+KYVK +D +LK KE ++MKV
Sbjct:   15 RAAAVRVEPAAKRWRMSVKDIAKGSEERMKKSIEAVGTSFNTIRTGRANPAILDRVMVSYYGAETPLKQLASVSTPSSTVIAIDAFDKSCIKDIERAIMESDLGLTPSNDGNVIRLNIPALTQDRRKEMVKQLKQLAEEGRVALRNIRRDGVDQIKALEKSSDIGKDESKIAQDEIQKLTDKYVKTVDSLLKDKEGEVMKV 215          
BLAST of Ggra8959.t1 vs. uniprot
Match: A0A7S0BL39 (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL39_9RHOD)

HSP 1 Score: 218 bits (555), Expect = 3.120e-68
Identity = 111/190 (58.42%), Postives = 151/190 (79.47%), Query Frame = 0
Query:   44 IRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV 233
            +R  + ++E   ++E+RMKKT+++++SNFNTVRTGRAN S+LDRV+V YY  +TPLNQLAS+SI  ++T+ ++PYDKS + D+ER+L+++D+G+ PNSDGS IRL VP LT+ERRK+ VK VKAI+E  RVA+RNIRRDA++  KK EK  ++ KDES T QD  QKLT+KYVK ID +   KE DI+KV
Sbjct:   34 VRVFMAQDERLKRAEDRMKKTVETVKSNFNTVRTGRANASMLDRVVVPYYEVDTPLNQLASISIPSSTTIQIDPYDKSVLADIERSLMEADLGMNPNSDGSVIRLIVPPLTQERRKEFVKSVKAIAEHGRVAVRNIRRDAIEKYKKAEKDGDMSKDESKTNQDGAQKLTDKYVKMIDTLASEKEKDILKV 223          
BLAST of Ggra8959.t1 vs. uniprot
Match: A0A5J4Z4W6 (Ribosome-recycling factor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4W6_PORPP)

HSP 1 Score: 218 bits (554), Expect = 7.360e-68
Identity = 109/183 (59.56%), Postives = 148/183 (80.87%), Query Frame = 0
Query:   51 NETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV 233
            ++  A +EERM K+MD++  +FNT+RTGRANP++LDRV+VSY+G ETPL QLASVS   ++ L VE +D SCV DVERA+++SD+G+TP +DGS +RL VP LT+ERRK+ VKQ+K ++E+ RVA+RNIRRD V+ +KK+EK SE+GKDES   QD +QKLT+KYVK +D+ L  KE ++MKV
Sbjct:   57 DDLVANAEERMSKSMDAVGQSFNTIRTGRANPAVLDRVVVSYWGVETPLKQLASVSTPSSTVLQVEVFDPSCVKDVERAIMESDLGMTPQTDGSTLRLNVPALTQERRKEFVKQLKQLAEDGRVAVRNIRRDIVEKIKKMEKDSEIGKDESKDGQDRIQKLTDKYVKMVDNALAEKEKEVMKV 239          
BLAST of Ggra8959.t1 vs. uniprot
Match: A0A1X6P8G4 (RRF domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8G4_PORUM)

HSP 1 Score: 214 bits (546), Expect = 2.690e-66
Identity = 110/191 (57.59%), Postives = 148/191 (77.49%), Query Frame = 0
Query:   46 CELTKNETAAKSEE---RMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV 233
            C  T     A+ EE   RM+KT++++++NFNT+RTGRA PSILDR+MV YYG ETPL  LAS+S + ++TLT++ +DK CV D+ERAL++SD+G+ PNSDG  IRLTVPQLT+ERRK+L KQ K+++E+ R+A RN+RRD +D +KK EK S+LGKD S  +QD++ KLT+KYV  ID   + KE DIMKV
Sbjct:   75 CGATMMALTAEEEEVSTRMEKTLEAVRTNFNTIRTGRATPSILDRIMVDYYGAETPLQSLASISATSSTTLTIDAFDKGCVKDIERALMESDLGMMPNSDGVVIRLTVPQLTKERRKELSKQAKSLAEDGRIACRNVRRDVIDKVKKQEKASDLGKDMSKDLQDKISKLTDKYVGMIDKAFEEKEKDIMKV 265          
BLAST of Ggra8959.t1 vs. uniprot
Match: A0A7S4EEJ6 (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEJ6_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.760e-65
Identity = 102/175 (58.29%), Postives = 147/175 (84.00%), Query Frame = 0
Query:   59 ERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV 233
            +RM+K+++S+  N NT+RTGRA+P+ILDRV   YYGTETP+NQ+AS+S+     LTVEP+DKS + DVERA+++SDVG+TP +DG+ IRL +P LTE+RRK+++KQ KAI EE +VA+RNIRR AVD++KKLEK S++ +DES + QD++QK+T++ VK+ID +++ KE+D+MKV
Sbjct:   54 DRMEKSIESVMQNMNTIRTGRASPAILDRVKCDYYGTETPINQMASISVPSAQQLTVEPFDKSMLGDVERAIMESDVGLTPMNDGTVIRLNIPSLTEDRRKEMMKQCKAIGEEGKVAVRNIRRKAVDSIKKLEKDSDISEDESKSSQDDIQKMTDEKVKEIDGIVEKKENDVMKV 228          
BLAST of Ggra8959.t1 vs. uniprot
Match: A0A0G4H7Q4 (RRF domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H7Q4_VITBC)

HSP 1 Score: 206 bits (523), Expect = 8.110e-64
Identity = 105/183 (57.38%), Postives = 141/183 (77.05%), Query Frame = 0
Query:   51 NETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV 233
            NE     EERM+K++D+L++N  T+RTGRANP +LDR+ + YYGT TPL QLAS      STL ++PYDKS +P +E+A+LQS++G+TPNSDG  IRL VP +TE+RRK + KQ K I+E++RVAIRNIRRD VD++KK+EK SEL +D+S   Q E QKLT+K+VK+ID+  K K+ +IM V
Sbjct:   10 NEYLLDGEERMQKSLDALRNNLATLRTGRANPGMLDRISIEYYGTPTPLKQLASYGAPDASTLRIDPYDKSVIPVIEKAILQSELGLTPNSDGKCIRLNVPAMTEDRRKGIAKQAKQIAEDSRVAIRNIRRDVVDSIKKMEKDSELSEDQSKDFQGEAQKLTDKFVKEIDETYKIKDKEIMTV 192          
BLAST of Ggra8959.t1 vs. uniprot
Match: M2VWP6 (Ribosome recycling factor (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWP6_GALSU)

HSP 1 Score: 207 bits (527), Expect = 1.190e-63
Identity = 104/184 (56.52%), Postives = 142/184 (77.17%), Query Frame = 0
Query:   48 LTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTVPQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDEVQKLTNKYVKQIDDMLKSKESDIM 231
            ++ +E   ++EERM         N +T+RTGRANP++LDR+ VSYYGTETPL  LAS++ S  +TLT+EPYD+S V D+E+A+ +SD+ +TPN+DG  IRL +P LTEERRKQL+K VK ++EE RVA+RNIRRD +D LKKLEK  ELGKDE  ++QD++QKLT+KY+K +++  K KE D+M
Sbjct:   63 VSSSEAQKEAEERMXXXXXXXXXNLSTLRTGRANPALLDRLTVSYYGTETPLKSLASITASSATTLTIEPYDRSYVKDIEKAIAESDLALTPNNDGKSIRLELPPLTEERRKQLIKSVKQLTEEGRVAVRNIRRDIMDKLKKLEKDGELGKDEMKSIQDDIQKLTDKYIKLMEEKAKEKEKDLM 246          
The following BLAST results are available for this feature:
BLAST of Ggra8959.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INL61.890e-10170.69Ribosome-recycling factor n=1 Tax=Gracilariopsis c... [more]
Q7XY974.500e-8970.62Ribosome recycling factor n=1 Tax=Griffithsia japo... [more]
R7QEJ91.090e-8866.82Ribosome-recycling factor RRF, Rhodoplastic n=1 Ta... [more]
A0A7S1TJD35.540e-7256.22Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S0BL393.120e-6858.42Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z4W67.360e-6859.56Ribosome-recycling factor n=1 Tax=Porphyridium pur... [more]
A0A1X6P8G42.690e-6657.59RRF domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S4EEJ62.760e-6558.29Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A0G4H7Q48.110e-6457.38RRF domain-containing protein n=2 Tax=Vitrella bra... [more]
M2VWP61.190e-6356.52Ribosome recycling factor (Plastid) n=1 Tax=Galdie... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1360.40coord: 79..153
e-value: 2.8E-68
score: 230.8
NoneNo IPR availablePANTHERPTHR20982:SF3MITOCHONDRIAL RIBOSOME RECYCLING FACTORcoord: 51..232
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..233
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
IPR002661Ribosome recycling factorTIGRFAMTIGR00496TIGR00496coord: 58..233
e-value: 3.3E-70
score: 233.2
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 51..232
IPR002661Ribosome recycling factorHAMAPMF_00040RRFcoord: 51..233
score: 26.905594
IPR002661Ribosome recycling factorCDDcd00520RRFcoord: 55..231
e-value: 7.93171E-77
score: 227.913
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 68..231
e-value: 2.4E-61
score: 206.4
IPR036191RRF superfamilyGENE3D1.10.132.20coord: 58..230
e-value: 2.8E-68
score: 230.8
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 52..233

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:974685..975386 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8959.t1Ggra8959.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 974685..975386 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8959.t1 ID=Ggra8959.t1|Name=Ggra8959.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MAFCFTGLPLSPTWTHSPVHHTFSRPNSLRLPRASRSRLHAPEIRCELTK
NETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLN
QLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTV
PQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDE
SMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002661Ribosome_recyc_fac
IPR023584Ribosome_recyc_fac_dom
IPR036191RRF_sf