Ggra8959.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8959.t1
Unique NameGgra8959.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:974685..975386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704191.1
Preferred nameRRF1
PFAMsRRF
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K02838,ko:K03283,ko:K13811
KEGG TC1.A.33.1
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00230,map00261,map00450,map00920,map01100,map01120,map01130,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00176,M00353,M00355
GOsGO:0000003,GO:0002181,GO:0002184,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007275,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009814,GO:0009817,GO:0009987,GO:0010154,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0032544,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0042742,GO:0043021,GO:0043023,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045087,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0061458,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098542,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
Evalue1.34e-62
EggNOG OGsCOG0233@1|root,KOG4759@2759|Eukaryota
EC2.7.1.25,2.7.7.4
Descriptionribosomal large subunit binding
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8959Ggra8959Gracilaria gracilis GNS1m malegenetig00000860_pilon 974685..975386 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8959.t1.start1Ggra8959.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 974685..974687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8959.t1.CDS1Ggra8959.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 974685..975386 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8959.t1.exon1Ggra8959.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 974685..975386 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8959.t1.stop1Ggra8959.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 975384..975386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8959.t1Ggra8959.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 974685..975386 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8959.t1 ID=Ggra8959.t1|Name=Ggra8959.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MAFCFTGLPLSPTWTHSPVHHTFSRPNSLRLPRASRSRLHAPEIRCELTK
NETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLN
QLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTV
PQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDE
SMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV*
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spliced messenger RNA

>Ggra8959.t1 ID=Ggra8959.t1|Name=Ggra8959.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000860_pilon:974685..975386+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTTTGCTTCACCGGGCTTCCCCTTTCCCCCACCTGGACACACAG
TCCTGTACATCACACATTCTCTCGTCCAAACTCTCTCCGACTCCCACGCG
CTAGTCGCTCAAGATTGCATGCTCCTGAGATTCGATGCGAGCTCACGAAG
AATGAAACGGCAGCCAAGTCAGAGGAACGCATGAAGAAAACGATGGATTC
TCTCCAGTCCAACTTTAACACTGTTCGAACGGGTCGCGCAAATCCATCCA
TCCTCGACCGCGTCATGGTGTCTTACTACGGCACCGAAACGCCATTGAAT
CAGTTAGCAAGCGTGTCCATAAGCGGGACTTCCACACTGACTGTTGAACC
GTATGATAAGAGCTGTGTGCCAGACGTTGAGAGAGCTCTTCTTCAAAGTG
ACGTTGGAATCACTCCGAATAGTGACGGTTCAAAGATTAGACTCACTGTT
CCCCAACTTACGGAGGAAAGACGGAAGCAACTTGTGAAACAGGTCAAAGC
GATTTCCGAAGAAGCACGCGTGGCAATTCGGAATATTAGACGAGATGCCG
TTGATGCCCTGAAGAAGTTGGAGAAGAAAAGCGAGCTCGGCAAGGATGAA
AGCATGACCATGCAAGACGAGGTTCAGAAGCTTACAAACAAGTACGTTAA
GCAAATAGACGATATGCTCAAGAGCAAAGAGTCGGACATAATGAAAGTCT
AA
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protein sequence of Ggra8959.t1

>Ggra8959.t1 ID=Ggra8959.t1|Name=Ggra8959.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MAFCFTGLPLSPTWTHSPVHHTFSRPNSLRLPRASRSRLHAPEIRCELTK
NETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLN
QLASVSISGTSTLTVEPYDKSCVPDVERALLQSDVGITPNSDGSKIRLTV
PQLTEERRKQLVKQVKAISEEARVAIRNIRRDAVDALKKLEKKSELGKDE
SMTMQDEVQKLTNKYVKQIDDMLKSKESDIMKV*
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mRNA from alignment at tig00000860_pilon:974685..975386+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8959.t1 ID=Ggra8959.t1|Name=Ggra8959.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000860_pilon:974685..975386+ (Gracilaria gracilis GNS1m male)
ATGGCCTTTTGCTTCACCGGGCTTCCCCTTTCCCCCACCTGGACACACAG
TCCTGTACATCACACATTCTCTCGTCCAAACTCTCTCCGACTCCCACGCG
CTAGTCGCTCAAGATTGCATGCTCCTGAGATTCGATGCGAGCTCACGAAG
AATGAAACGGCAGCCAAGTCAGAGGAACGCATGAAGAAAACGATGGATTC
TCTCCAGTCCAACTTTAACACTGTTCGAACGGGTCGCGCAAATCCATCCA
TCCTCGACCGCGTCATGGTGTCTTACTACGGCACCGAAACGCCATTGAAT
CAGTTAGCAAGCGTGTCCATAAGCGGGACTTCCACACTGACTGTTGAACC
GTATGATAAGAGCTGTGTGCCAGACGTTGAGAGAGCTCTTCTTCAAAGTG
ACGTTGGAATCACTCCGAATAGTGACGGTTCAAAGATTAGACTCACTGTT
CCCCAACTTACGGAGGAAAGACGGAAGCAACTTGTGAAACAGGTCAAAGC
GATTTCCGAAGAAGCACGCGTGGCAATTCGGAATATTAGACGAGATGCCG
TTGATGCCCTGAAGAAGTTGGAGAAGAAAAGCGAGCTCGGCAAGGATGAA
AGCATGACCATGCAAGACGAGGTTCAGAAGCTTACAAACAAGTACGTTAA
GCAAATAGACGATATGCTCAAGAGCAAAGAGTCGGACATAATGAAAGTCT
AA
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Coding sequence (CDS) from alignment at tig00000860_pilon:974685..975386+

>Ggra8959.t1 ID=Ggra8959.t1|Name=Ggra8959.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000860_pilon:974685..975386+ (Gracilaria gracilis GNS1m male)
ATGGCCTTTTGCTTCACCGGGCTTCCCCTTTCCCCCACCTGGACACACAG
TCCTGTACATCACACATTCTCTCGTCCAAACTCTCTCCGACTCCCACGCG
CTAGTCGCTCAAGATTGCATGCTCCTGAGATTCGATGCGAGCTCACGAAG
AATGAAACGGCAGCCAAGTCAGAGGAACGCATGAAGAAAACGATGGATTC
TCTCCAGTCCAACTTTAACACTGTTCGAACGGGTCGCGCAAATCCATCCA
TCCTCGACCGCGTCATGGTGTCTTACTACGGCACCGAAACGCCATTGAAT
CAGTTAGCAAGCGTGTCCATAAGCGGGACTTCCACACTGACTGTTGAACC
GTATGATAAGAGCTGTGTGCCAGACGTTGAGAGAGCTCTTCTTCAAAGTG
ACGTTGGAATCACTCCGAATAGTGACGGTTCAAAGATTAGACTCACTGTT
CCCCAACTTACGGAGGAAAGACGGAAGCAACTTGTGAAACAGGTCAAAGC
GATTTCCGAAGAAGCACGCGTGGCAATTCGGAATATTAGACGAGATGCCG
TTGATGCCCTGAAGAAGTTGGAGAAGAAAAGCGAGCTCGGCAAGGATGAA
AGCATGACCATGCAAGACGAGGTTCAGAAGCTTACAAACAAGTACGTTAA
GCAAATAGACGATATGCTCAAGAGCAAAGAGTCGGACATAATGAAAGTCT
AA
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