Ggra8942.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8942.t1
Unique NameGgra8942.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Homology
BLAST of Ggra8942.t1 vs. uniprot
Match: A0A2V3INQ9 (Ras-related protein Rab-13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INQ9_9FLOR)

HSP 1 Score: 317 bits (811), Expect = 8.460e-108
Identity = 157/185 (84.86%), Postives = 169/185 (91.35%), Query Frame = 0
Query:    1 MTDTGTPAQASVEYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEIYESNSV 185
            MTD  T  Q SVEYHYLYKLLLIGDSGVGKSCILTRFADS Y D QTSTIGVDFKIRTI I+DKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSF SVE SW+EE+ENNT+S +RTLLIGNKCDLE++REV RD+AE+LARKYGM YIETSAKTAENVFEAFVTISK+I+E+  V
Sbjct:    1 MTDVQTQVQPSVEYHYLYKLLLIGDSGVGKSCILTRFADSVYADCQTSTIGVDFKIRTIEIEDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFLSVENSWLEEIENNTSSSIRTLLIGNKCDLESQREVRRDDAESLARKYGMRYIETSAKTAENVFEAFVTISKDIHENKYV 185          
BLAST of Ggra8942.t1 vs. uniprot
Match: A0A5J4YYU9 (Ras-related protein ORAB-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYU9_PORPP)

HSP 1 Score: 219 bits (559), Expect = 2.110e-69
Identity = 109/170 (64.12%), Postives = 135/170 (79.41%), Query Frame = 0
Query:   13 EYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEIYES 182
            EY YL+KLL+IGDSGVGKS +L RFAD+TY +S  STIGVDFKIRTI +DDK +KLQIWD+AGQERFRTIAAAYYRGAHG+ I +DITD KSF++V+ SW++E+    +  V  LL+GNKCDL N+R V  +E + LA   GM ++ETSAKTAENV  AF T+++EI  S
Sbjct:    5 EYDYLFKLLVIGDSGVGKSNLLLRFADNTYTESHISTIGVDFKIRTIDLDDKTIKLQIWDTAGQERFRTIAAAYYRGAHGIVITYDITDRKSFENVK-SWMDEIGKYGSERVNKLLVGNKCDLVNKRAVETEEGQELADALGMKFLETSAKTAENVQLAFTTMTREIMSS 173          
BLAST of Ggra8942.t1 vs. uniprot
Match: A0A1Q3FY52 (Putative ras-related protein rab-8a n=1 Tax=Culex tarsalis TaxID=7177 RepID=A0A1Q3FY52_CULTA)

HSP 1 Score: 218 bits (554), Expect = 1.520e-68
Identity = 103/169 (60.95%), Postives = 135/169 (79.88%), Query Frame = 0
Query:   11 SVEYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEI 179
            S EY YL+KLLLIGDSGVGKSC+L RFAD TY +S  STIGVDFKIRTI +D K++KLQIWD+AGQERFRTI  AYYRGA G+ +V+DIT EKSF++++ +WI  +E N ++ V  +L+GNKC+L  +R+V RD  E LA +YG+ ++ETSAK + NV EAF T++++I
Sbjct:    2 SPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIK-NWIRNIEENASADVEKMLLGNKCELNEKRQVTRDRGEQLAVEYGIKFMETSAKASINVDEAFFTLARDI 169          
BLAST of Ggra8942.t1 vs. uniprot
Match: A0A7S0T6P4 (Hypothetical protein n=2 Tax=Erythrolobus TaxID=362234 RepID=A0A7S0T6P4_9RHOD)

HSP 1 Score: 215 bits (547), Expect = 1.440e-67
Identity = 104/170 (61.18%), Postives = 135/170 (79.41%), Query Frame = 0
Query:   10 ASVEYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEI 179
            A+ EY YL+K+LLIGDSGVGKSC+L RFAD+TY DS  +TIGVDFKIRTI +DDK +KLQIWD+AGQERFRTIAAAYYRGAHG+ I +DI+D KSF++V+ SW++E+    +  V  LL+GNK D  ++R V   E + LA   GM ++E SAKT+ENV +AF+T+++EI
Sbjct:    2 ANPEYDYLFKMLLIGDSGVGKSCLLLRFADNTYNDSHIATIGVDFKIRTIELDDKTIKLQIWDTAGQERFRTIAAAYYRGAHGIVITYDISDRKSFENVK-SWMDEIGKYGSERVNKLLVGNKSDKVDQRAVETSEGQELADALGMKFLEASAKTSENVEQAFITMTREI 170          
BLAST of Ggra8942.t1 vs. uniprot
Match: Q5CWY7 (RAS small GTpases RIC1/ypt1 n=8 Tax=Cryptosporidium TaxID=5806 RepID=Q5CWY7_CRYPI)

HSP 1 Score: 213 bits (542), Expect = 8.540e-67
Identity = 106/174 (60.92%), Postives = 132/174 (75.86%), Query Frame = 0
Query:   13 EYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEIYESNSVN 186
            EY YL+KLLLIGDSGVGKSC+L RFAD TY DS  STIGVDFKIRTI +++K VKLQIWD+AGQERFRTI ++YYRGAHG+ IV+D+TD  SF +V+  WI+E++      V  LL+GNKCDL ++R V  DE   LA  +G+ +IETSAK A NV +AF T++ EI +   VN
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVK-QWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQVN 176          
BLAST of Ggra8942.t1 vs. uniprot
Match: Q17B74 (AAEL005069-PA n=12 Tax=Diptera TaxID=7147 RepID=Q17B74_AEDAE)

HSP 1 Score: 212 bits (539), Expect = 2.680e-66
Identity = 112/207 (54.11%), Postives = 147/207 (71.01%), Query Frame = 0
Query:   11 SVEYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEIYESNSVNGIVSLAQQMEAIRVTDDMRLGENDKRSKCGC 217
            S EY YL+KLLLIGDSGVGKSC+L RFAD TY +S  STIGVDFKIRTI +D K +KLQIWD+AGQERFRTI ++YYRGAHG+ +V+D TD++SF +V+ +W+EE+E      V  LL+GNKCDL+ ++ V+   A   A + G+ ++ETSAK A NV +AF+T++ EI   N V    S A+   A+++ D  R  E    SK GC
Sbjct:    7 SPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVK-TWLEEIERYACENVNKLLVGNKCDLQTKKVVDTTTAMEYANQLGIPFLETSAKNATNVEQAFMTMAAEI--KNRVGPPSSAAEAPSAVKI-DKSRSVE----SKSGC 205          
BLAST of Ggra8942.t1 vs. uniprot
Match: A0A8J4TKE7 (Rab GTPase n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4TKE7_9TREM)

HSP 1 Score: 211 bits (537), Expect = 4.300e-66
Identity = 106/177 (59.89%), Postives = 136/177 (76.84%), Query Frame = 0
Query:   13 EYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEIYES-NSVNGI 188
            +Y YL+KLLLIGDSGVGKSC+L RFAD TY D+  STIGVDFKIRTI +D K VKLQIWD+AGQERFRTI ++YYRGAHG+ +V+D+TD+ SF +V  SW+EE+++   S V  LL+GNKCDLE +R V     +ALA +  M ++ETSAK A NV EAFV ++++I  S  S+ G+
Sbjct:    4 DYDYLFKLLLIGDSGVGKSCLLLRFADDTYSDTYISTIGVDFKIRTIELDGKAVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVH-SWLEEIKHYADSKVNRLLVGNKCDLEAKRVVQTSTGKALADELHMPFLETSAKDATNVEEAFVKMAQQIAASATSIQGM 179          
BLAST of Ggra8942.t1 vs. uniprot
Match: A0A7J7IJ87 (Ras- protein Rab-1A n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7J7IJ87_9RHOD)

HSP 1 Score: 211 bits (537), Expect = 5.940e-66
Identity = 111/209 (53.11%), Postives = 150/209 (71.77%), Query Frame = 0
Query:   10 ASVEYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDD-KRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEIYESNSVNGIVSLAQQMEAIRVTDDMRLGENDKRSKCGC 217
            ++ ++ YL+KLLLIGDSGVGKSC+L RFA+ ++ DS  STIGVDFKI+++  +D K VKLQIWD+AGQERFRTI ++YYRGAHG+ IVFD+TDE+SF++V  SWI E+EN  +  V  LL+GNK DL  +R V+R +AE LA++ G+ YIETSAKTA++V EAFV ++KEI  + + N  ++        R   D+R          GC
Sbjct:    2 SATDFDYLFKLLLIGDSGVGKSCLLLRFAEGSFSDSFMSTIGVDFKIKSLQFEDGKVVKLQIWDTAGQERFRTITSSYYRGAHGIIIVFDVTDEESFKNVT-SWISEIENYASDSVCKLLVGNKTDLVEQRVVSRQQAEELAQRLGIPYIETSAKTADHVEEAFVMMTKEI-RNRTGNAALAKGAGAGTSRSGVDVRASTEQVSQSSGC 208          
BLAST of Ggra8942.t1 vs. uniprot
Match: A0A7S0LGU1 (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGU1_9EUKA)

HSP 1 Score: 211 bits (538), Expect = 6.150e-66
Identity = 101/170 (59.41%), Postives = 133/170 (78.24%), Query Frame = 0
Query:   10 ASVEYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEI 179
            A+ EY YL+KLLLIGDSGVGKSC+L RFAD TY +S  STIGVDFKIRTI +D K +KLQIWD+AGQERFRTI ++YYRGAHG+ +V+D+TD +SF +V+  W+ E+E   +  V  LL+GNKCDL N+++V  D+A+A A    + ++ETSAK A NV +AF+T++ EI
Sbjct:   21 AATEYDYLFKLLLIGDSGVGKSCLLLRFADHTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDLESFNNVK-QWLSEIERYASENVNKLLVGNKCDLSNKKQVEYDQAKAFADNLDIPFLETSAKNATNVEKAFLTMAAEI 189          
BLAST of Ggra8942.t1 vs. uniprot
Match: A0A6J3EE85 (ras-related protein Rab-13 n=3 Tax=Anatidae TaxID=8830 RepID=A0A6J3EE85_AYTFU)

HSP 1 Score: 211 bits (536), Expect = 7.170e-66
Identity = 96/179 (53.63%), Postives = 143/179 (79.89%), Query Frame = 0
Query:   14 YHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALARKYGMSYIETSAKTAENVFEAFVTISKEIYESNSVNGIVSLA 192
            Y +LYKLLLIGDSGVGK+C++ RFA+  +  +  STIG+DFKIRT+ ID K++KLQ+WD+AGQERF+TI  AYYRGA G+ +V+DITDEKSF++++ +W++ ++ N ++ V  LLIGNKCD+E++R+V RD AE LA+++G+ + ETSAK++ NV EAF T++++I + ++   + S A
Sbjct:    5 YDHLYKLLLIGDSGVGKTCLIIRFAEDNFTSTYISTIGIDFKIRTVEIDGKKIKLQVWDTAGQERFKTITTAYYRGAVGIILVYDITDEKSFENIQ-NWMKSIKENASAGVERLLIGNKCDMESKRKVQRDAAEKLAKEHGIRFFETSAKSSVNVEEAFSTLARDILQKSTRKAVPSTA 182          
The following BLAST results are available for this feature:
BLAST of Ggra8942.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INQ98.460e-10884.86Ras-related protein Rab-13 n=1 Tax=Gracilariopsis ... [more]
A0A5J4YYU92.110e-6964.12Ras-related protein ORAB-1 n=1 Tax=Porphyridium pu... [more]
A0A1Q3FY521.520e-6860.95Putative ras-related protein rab-8a n=1 Tax=Culex ... [more]
A0A7S0T6P41.440e-6761.18Hypothetical protein n=2 Tax=Erythrolobus TaxID=36... [more]
Q5CWY78.540e-6760.92RAS small GTpases RIC1/ypt1 n=8 Tax=Cryptosporidiu... [more]
Q17B742.680e-6654.11AAEL005069-PA n=12 Tax=Diptera TaxID=7147 RepID=Q1... [more]
A0A8J4TKE74.300e-6659.89Rab GTPase n=1 Tax=Paragonimus heterotremus TaxID=... [more]
A0A7J7IJ875.940e-6653.11Ras- protein Rab-1A n=3 Tax=cellular organisms Tax... [more]
A0A7S0LGU16.150e-6659.41Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A6J3EE857.170e-6653.63ras-related protein Rab-13 n=3 Tax=Anatidae TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 41..57
score: 30.3
coord: 59..81
score: 51.44
coord: 18..39
score: 51.93
coord: 122..135
score: 46.5
coord: 157..179
score: 44.4
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 15..182
e-value: 5.9E-33
score: 125.5
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 23..213
e-value: 5.1E-4
score: 8.6
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 18..182
e-value: 1.1E-93
score: 327.2
NoneNo IPR availablePANTHERPTHR47977LD21953P-RELATEDcoord: 15..182
NoneNo IPR availablePANTHERPTHR47977:SF6RAS-RELATED PROTEIN RABD2A-LIKEcoord: 15..182
NoneNo IPR availablePROSITEPS51419RABcoord: 13..217
score: 34.674232
NoneNo IPR availablePROSITEPS51420RHOcoord: 11..180
score: 8.677492
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 20..177
e-value: 2.1E-11
score: 26.6
IPR001806Small GTPasePFAMPF00071Rascoord: 19..180
e-value: 1.7E-59
score: 200.0
IPR001806Small GTPasePROSITEPS51421RAScoord: 9..217
score: 19.005013
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 8..213
e-value: 2.7E-67
score: 228.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 13..183
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 17..175
e-value: 1.5E-28
score: 97.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:878761..879531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8942.t1Ggra8942.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 878761..879531 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8942.t1 ID=Ggra8942.t1|Name=Ggra8942.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MTDTGTPAQASVEYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTI
GVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDIT
DEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALA
RKYGMSYIETSAKTAENVFEAFVTISKEIYESNSVNGIVSLAQQMEAIRV
TDDMRLGENDKRSKCGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom