Ggra8942.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8942.t1
Unique NameGgra8942.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:878761..879531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5808.XP_002142337.1
Preferred namerab1
PFAMsRas
Max annot lvl5794|Apicomplexa
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Evalue3.44e-66
EggNOG OGsKOG0084@1|root,KOG0084@2759|Eukaryota,3Y9SJ@5794|Apicomplexa,3YJGF@5796|Coccidia
DescriptionSignal recognition particle receptor beta subunit
COG categoryU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8942Ggra8942Gracilaria gracilis GNS1m malegenetig00000860_pilon 878761..879531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8942.t1Ggra8942.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 878761..879531 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8942.t1.start1Ggra8942.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 878761..878763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8942.t1.CDS1Ggra8942.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 878761..879308 +
Ggra8942.t1.CDS2Ggra8942.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 879426..879531 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8942.t1.exon1Ggra8942.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 878761..879308 +
Ggra8942.t1.exon2Ggra8942.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 879426..879531 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8942.t1.intron1Ggra8942.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 879309..879425 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8942.t1.stop1Ggra8942.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 879529..879531 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8942.t1 ID=Ggra8942.t1|Name=Ggra8942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=218bp
MTDTGTPAQASVEYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTI
GVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDIT
DEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALA
RKYGMSYIETSAKTAENVFEAFVTISKEIYESNSVNGIVSLAQQMEAIRV
TDDMRLGENDKRSKCGC*
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spliced messenger RNA

>Ggra8942.t1 ID=Ggra8942.t1|Name=Ggra8942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000860_pilon:878761..879531+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGACACTGGAACGCCTGCACAAGCCTCAGTGGAGTACCATTATCT
CTACAAGTTGCTTCTTATAGGGGATTCGGGCGTTGGAAAATCCTGTATTC
TAACACGGTTCGCAGATTCCACTTACGAAGACAGTCAAACAAGCACCATT
GGCGTTGACTTCAAAATACGCACTATCGGGATTGACGATAAGAGAGTTAA
GCTTCAAATATGGGACTCTGCTGGTCAAGAACGCTTTCGTACAATTGCTG
CTGCGTACTACAGAGGAGCTCATGGTGTAGGTATTGTGTTCGATATAACG
GATGAGAAGAGCTTTCAAAGTGTAGAGGGATCATGGATTGAAGAGGTAGA
GAATAACACAACTTCACCTGTTCGCACGCTTCTAATTGGGAACAAATGCG
ACCTGGAGAACGAACGTGAAGTAAACAGGGATGAAGCTGAAGCTCTTGCA
AGAAAATACGGTATGAGCTATATCGAAACGTCTGCTAAAACAGCAGAGAA
CGTATTCGAGGCGTTTGTGACAATCTCCAAAGAGATTTATGAAAGCAACA
GCGTAAACGGCATAGTCTCCTTAGCCCAACAAATGGAAGCAATACGAGTA
ACGGATGACATGCGACTAGGCGAGAACGATAAACGCTCGAAATGTGGATG
TTGA
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protein sequence of Ggra8942.t1

>Ggra8942.t1 ID=Ggra8942.t1|Name=Ggra8942.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MTDTGTPAQASVEYHYLYKLLLIGDSGVGKSCILTRFADSTYEDSQTSTI
GVDFKIRTIGIDDKRVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDIT
DEKSFQSVEGSWIEEVENNTTSPVRTLLIGNKCDLENEREVNRDEAEALA
RKYGMSYIETSAKTAENVFEAFVTISKEIYESNSVNGIVSLAQQMEAIRV
TDDMRLGENDKRSKCGC*
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mRNA from alignment at tig00000860_pilon:878761..879531+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8942.t1 ID=Ggra8942.t1|Name=Ggra8942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000860_pilon:878761..879531+ (Gracilaria gracilis GNS1m male)
ATGACGGACACTGGAACGCCTGCACAAGCCTCAGTGGAGTACCATTATCT
CTACAAGTTGCTTCTTATAGGGGATTCGGGCGTTGGAAAATCCTGTATTC
TAACACGGTTCGCAGATTCCACTTACGAAGACAGTCAAACAAGCACCATT
GGCGTTGACTTCAAAATACGCACTATCGGGATTGACGATAAGAGAGTTAA
GCTTCAAATATGGGACTCTGCTGGTCAAGAACGCTTTCGTACAATTGCTG
CTGCGTACTACAGAGGAGCTCATGGTGTAGGTATTGTGTTCGATATAACG
GATGAGAAGAGCTTTCAAAGTGTAGAGGGATCATGGATTGAAGAGGTAGA
GAATAACACAACTTCACCTGTTCGCACGCTTCTAATTGGGAACAAATGCG
ACCTGGAGAACGAACGTGAAGTAAACAGGGATGAAGCTGAAGCTCTTGCA
AGAAAATACGGTATGAGCTATATCGAAACGTCTGCTAAAACAGCAGAGAA
CGTATTCGAGGCGTTTGTGACAATCTCCAAAGAGATTTATGAAAGCAAGT
AGGTTACTCACTCCACGCTTTTCCTTATGACTTTCTCGCCCTGTGTTTCG
AAAACTAACCAACGTATATGGAATCTGGCCTCTTGGCTCTTCTTCAACGT
CTGCGAATAATGTAGCAGCGTAAACGGCATAGTCTCCTTAGCCCAACAAA
TGGAAGCAATACGAGTAACGGATGACATGCGACTAGGCGAGAACGATAAA
CGCTCGAAATGTGGATGTTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:878761..879531+

>Ggra8942.t1 ID=Ggra8942.t1|Name=Ggra8942.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000860_pilon:878761..879531+ (Gracilaria gracilis GNS1m male)
ATGACGGACACTGGAACGCCTGCACAAGCCTCAGTGGAGTACCATTATCT
CTACAAGTTGCTTCTTATAGGGGATTCGGGCGTTGGAAAATCCTGTATTC
TAACACGGTTCGCAGATTCCACTTACGAAGACAGTCAAACAAGCACCATT
GGCGTTGACTTCAAAATACGCACTATCGGGATTGACGATAAGAGAGTTAA
GCTTCAAATATGGGACTCTGCTGGTCAAGAACGCTTTCGTACAATTGCTG
CTGCGTACTACAGAGGAGCTCATGGTGTAGGTATTGTGTTCGATATAACG
GATGAGAAGAGCTTTCAAAGTGTAGAGGGATCATGGATTGAAGAGGTAGA
GAATAACACAACTTCACCTGTTCGCACGCTTCTAATTGGGAACAAATGCG
ACCTGGAGAACGAACGTGAAGTAAACAGGGATGAAGCTGAAGCTCTTGCA
AGAAAATACGGTATGAGCTATATCGAAACGTCTGCTAAAACAGCAGAGAA
CGTATTCGAGGCGTTTGTGACAATCTCCAAAGAGATTTATGAAAGCAACA
GCGTAAACGGCATAGTCTCCTTAGCCCAACAAATGGAAGCAATACGAGTA
ACGGATGACATGCGACTAGGCGAGAACGATAAACGCTCGAAATGTGGATG
TTGA
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