Ggra8876.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8876.t1
Unique NameGgra8876.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length493
Homology
BLAST of Ggra8876.t1 vs. uniprot
Match: A0A2V3J4U4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4U4_9FLOR)

HSP 1 Score: 379 bits (972), Expect = 3.940e-118
Identity = 226/508 (44.49%), Postives = 306/508 (60.24%), Query Frame = 0
Query:    4 GPTVVEISAVSSNNSVAASPVVWNRDLLLIPEKVNVSLHTDEKAKVFVISSWPNMHHIELKDARVDSSGLSHIYGSTSRFPNPICDDSGTQLMTSIVGEHLGIVPNHITTIPVPVRDCDEPYTLNVIFSALKLVTKSVEETPSL--------NSYIIFDDQLQESGFLNDSRLRRELEVLANAGVITFVPGKECHEVQSSYIAVGAFGRRVPDQENSSSVE---EFVIQSAQCSSMFDVFGPGDFSSTASITGPESYTNLIWGSNVAAAGVLSVFLLMSIDQNRKLNVTETKNLLRGMTRTIPLIGNLRTGEFIGSGPALPLLGGASSLSDLRKSFAELPS-SNPTSNNFIRFLSNLPIGAIIGICXXXXXXXILIIVGGIFAFRRSRGSESGDGESTFEEEDIEFAP------SDENENHETQRDRALQRPPTIIDIQSPIPIRQRSGSRGTDKSRPVQSQPTRIPVVQRLLSLNRAKESPIPKGDKASWFATPRSQK-PGNLSFNR 492
            G   V +S   S N+ A SP++WNRDLL +PEK N +L+  EK+K+FVISSWPN+ H+EL  A +D+SGL  IYGS SR P  ICDD GTQL+TS+VG  +GI P     +P+PVRDC+  Y+ +VI SAL+ V  +V+ +           N++++FD+ LQE+G +ND  L +ELE+L+N GV+  VPGK C+  + SY+AV AFGRRV D  N+  VE   ++VI S+QC  +FDVFGPGD+S++    GPESY  ++ G NVAA G++SVFL +S   N  LN+T+ K++L  M    PLIGN+   EF G    LPLLG  SSLSDLRKSF +  S S+  S  F R +S L    I+GI     XXX                        +  E DIE A       + + + +  ++D A +      ++ SPIP+R+R                 R+PVVQRLLS+NR+KESPI +GDKASWFATP++    GN +F R
Sbjct:  465 GAVNVRLSTSRSTNAEAVSPMLWNRDLLSLPEKDNNTLNLAEKSKIFVISSWPNLEHVELLGATIDTSGLQQIYGSPSRLPRSICDDLGTQLVTSVVGSRIGIGPRSTVIVPIPVRDCERSYSRSVILSALRFVRTTVDVSARAKDDSSSHPNTFVLFDEYLQETGLVNDVVLLKELELLSNLGVVNVVPGKTCNVKRPSYVAVRAFGRRVSD--NTQRVELSDKYVIDSSQCLDLFDVFGPGDYSTSVYTAGPESYRTIMQGCNVAAGGIVSVFLFLSSSLNVPLNITKVKDILDEMGEVSPLIGNISLNEFQGIARELPLLGAGSSLSDLRKSFTKRSSESSKESIGFFRTISKLSTAVIVGISLTIGXXXXXXXXXXXXXXXXXXXXXXXXXXXSVYEVDIETASLTHDSTTAKQDTNRNKKDSAARE----SEVASPIPLRKRXXXXXXXXXXXXXXX-IRMPVVQRLLSMNRSKESPITRGDKASWFATPKAPDGAGNRTFKR 965          
The following BLAST results are available for this feature:
BLAST of Ggra8876.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J4U43.940e-11844.49Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 384..492
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 426..454
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 376..492
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..347
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 348..375
NoneNo IPR availableTMHMMTMhelixcoord: 351..373

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:613785..615263 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8876.t1Ggra8876.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 613785..615263 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8876.t1 ID=Ggra8876.t1|Name=Ggra8876.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=493bp
MSSGPTVVEISAVSSNNSVAASPVVWNRDLLLIPEKVNVSLHTDEKAKVF
VISSWPNMHHIELKDARVDSSGLSHIYGSTSRFPNPICDDSGTQLMTSIV
GEHLGIVPNHITTIPVPVRDCDEPYTLNVIFSALKLVTKSVEETPSLNSY
IIFDDQLQESGFLNDSRLRRELEVLANAGVITFVPGKECHEVQSSYIAVG
AFGRRVPDQENSSSVEEFVIQSAQCSSMFDVFGPGDFSSTASITGPESYT
NLIWGSNVAAAGVLSVFLLMSIDQNRKLNVTETKNLLRGMTRTIPLIGNL
RTGEFIGSGPALPLLGGASSLSDLRKSFAELPSSNPTSNNFIRFLSNLPI
GAIIGICLAVCLALILIIVGGIFAFRRSRGSESGDGESTFEEEDIEFAPS
DENENHETQRDRALQRPPTIIDIQSPIPIRQRSGSRGTDKSRPVQSQPTR
IPVVQRLLSLNRAKESPIPKGDKASWFATPRSQKPGNLSFNR*
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