Ggra8876.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8876.t1
Unique Name	Ggra8876.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	493

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:613785..615263 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8876	Ggra8876	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 613785..615263 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8876.t1.start1	Ggra8876.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 613785..613787 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8876.t1.CDS1	Ggra8876.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 613785..615263 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8876.t1.exon1	Ggra8876.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 613785..615263 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8876.t1.stop1	Ggra8876.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 615261..615263 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8876.t1	Ggra8876.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 613785..615263 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:613785..615263+
coding sequence from alignment at tig00000860_pilon:613785..615263+

mRNA sequence

>Ggra8876.t1 ID=Ggra8876.t1|Name=Ggra8876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=493bp
MSSGPTVVEISAVSSNNSVAASPVVWNRDLLLIPEKVNVSLHTDEKAKVF
VISSWPNMHHIELKDARVDSSGLSHIYGSTSRFPNPICDDSGTQLMTSIV
GEHLGIVPNHITTIPVPVRDCDEPYTLNVIFSALKLVTKSVEETPSLNSY
IIFDDQLQESGFLNDSRLRRELEVLANAGVITFVPGKECHEVQSSYIAVG
AFGRRVPDQENSSSVEEFVIQSAQCSSMFDVFGPGDFSSTASITGPESYT
NLIWGSNVAAAGVLSVFLLMSIDQNRKLNVTETKNLLRGMTRTIPLIGNL
RTGEFIGSGPALPLLGGASSLSDLRKSFAELPSSNPTSNNFIRFLSNLPI
GAIIGICLAVCLALILIIVGGIFAFRRSRGSESGDGESTFEEEDIEFAPS
DENENHETQRDRALQRPPTIIDIQSPIPIRQRSGSRGTDKSRPVQSQPTR
IPVVQRLLSLNRAKESPIPKGDKASWFATPRSQKPGNLSFNR*

spliced messenger RNA

>Ggra8876.t1 ID=Ggra8876.t1|Name=Ggra8876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000860_pilon:613785..615263+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTGGACCCACAGTAGTCGAGATCTCAGCCGTTAGCTCCAACAA
CTCAGTGGCGGCATCTCCGGTTGTCTGGAATCGAGATCTCCTATTGATAC
CAGAAAAGGTGAACGTGAGCCTTCATACTGATGAAAAAGCAAAAGTCTTC
GTCATTTCTTCCTGGCCCAATATGCATCATATCGAGCTCAAGGATGCGCG
TGTGGATAGCTCTGGTCTCAGCCACATATACGGATCAACTTCTCGCTTCC
CAAATCCTATTTGTGATGATTCCGGAACTCAACTCATGACCTCAATTGTT
GGAGAACATCTAGGCATCGTTCCAAACCATATCACCACCATTCCAGTTCC
TGTTCGGGATTGTGATGAGCCATACACACTCAACGTCATTTTCAGTGCTC
TCAAGCTTGTGACTAAGAGCGTGGAAGAAACACCATCACTGAATTCCTAT
ATTATATTCGATGATCAACTACAAGAAAGTGGCTTCTTAAACGACTCAAG
ATTGCGAAGGGAATTGGAAGTTCTTGCAAACGCAGGAGTGATTACTTTTG
TCCCAGGAAAAGAATGCCATGAAGTGCAATCGTCTTATATAGCTGTTGGG
GCTTTTGGCCGCCGGGTTCCAGATCAGGAAAATTCGTCCTCTGTCGAAGA
GTTTGTCATTCAGTCAGCTCAGTGTTCGAGCATGTTTGATGTTTTCGGAC
CAGGAGACTTTAGCTCTACGGCTTCCATTACGGGTCCCGAATCATATACA
AATCTCATCTGGGGCTCTAATGTTGCAGCAGCAGGAGTGCTAAGCGTTTT
TCTGCTGATGTCTATCGATCAGAATCGAAAGCTAAACGTTACCGAGACAA
AGAACCTGCTTCGGGGGATGACGAGGACGATCCCCCTAATTGGGAACTTG
CGTACCGGTGAGTTTATCGGGTCTGGACCTGCTCTACCACTCCTTGGCGG
CGCATCATCACTTTCCGATTTGAGGAAGTCTTTCGCAGAACTACCGTCCT
CAAATCCCACATCGAATAACTTCATTCGATTCCTTTCGAATTTGCCCATT
GGGGCTATAATCGGAATTTGTCTAGCAGTTTGCCTTGCCTTGATCTTGAT
TATTGTGGGAGGTATTTTCGCATTTCGGCGCAGCAGGGGTTCAGAGTCAG
GAGATGGGGAATCTACATTCGAAGAAGAGGACATCGAGTTTGCACCATCG
GATGAAAACGAGAATCACGAGACACAACGTGACCGCGCTCTCCAACGCCC
TCCCACAATAATAGACATACAATCACCAATTCCAATTCGTCAAAGGTCGG
GGAGTCGCGGCACAGACAAGAGCCGTCCAGTGCAGTCACAGCCTACTCGC
ATTCCTGTCGTACAACGATTGCTTTCGTTGAACAGAGCGAAGGAATCTCC
AATCCCTAAAGGTGACAAGGCCTCATGGTTTGCTACTCCCAGGAGTCAGA
AACCTGGAAATCTTAGTTTTAACAGATGA

protein sequence of Ggra8876.t1

>Ggra8876.t1 ID=Ggra8876.t1|Name=Ggra8876.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=493bp
MSSGPTVVEISAVSSNNSVAASPVVWNRDLLLIPEKVNVSLHTDEKAKVF
VISSWPNMHHIELKDARVDSSGLSHIYGSTSRFPNPICDDSGTQLMTSIV
GEHLGIVPNHITTIPVPVRDCDEPYTLNVIFSALKLVTKSVEETPSLNSY
IIFDDQLQESGFLNDSRLRRELEVLANAGVITFVPGKECHEVQSSYIAVG
AFGRRVPDQENSSSVEEFVIQSAQCSSMFDVFGPGDFSSTASITGPESYT
NLIWGSNVAAAGVLSVFLLMSIDQNRKLNVTETKNLLRGMTRTIPLIGNL
RTGEFIGSGPALPLLGGASSLSDLRKSFAELPSSNPTSNNFIRFLSNLPI
GAIIGICLAVCLALILIIVGGIFAFRRSRGSESGDGESTFEEEDIEFAPS
DENENHETQRDRALQRPPTIIDIQSPIPIRQRSGSRGTDKSRPVQSQPTR
IPVVQRLLSLNRAKESPIPKGDKASWFATPRSQKPGNLSFNR*

mRNA from alignment at tig00000860_pilon:613785..615263+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8876.t1 ID=Ggra8876.t1|Name=Ggra8876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000860_pilon:613785..615263+ (Gracilaria gracilis GNS1m male)
ATGTCTTCTGGACCCACAGTAGTCGAGATCTCAGCCGTTAGCTCCAACAA
CTCAGTGGCGGCATCTCCGGTTGTCTGGAATCGAGATCTCCTATTGATAC
CAGAAAAGGTGAACGTGAGCCTTCATACTGATGAAAAAGCAAAAGTCTTC
GTCATTTCTTCCTGGCCCAATATGCATCATATCGAGCTCAAGGATGCGCG
TGTGGATAGCTCTGGTCTCAGCCACATATACGGATCAACTTCTCGCTTCC
CAAATCCTATTTGTGATGATTCCGGAACTCAACTCATGACCTCAATTGTT
GGAGAACATCTAGGCATCGTTCCAAACCATATCACCACCATTCCAGTTCC
TGTTCGGGATTGTGATGAGCCATACACACTCAACGTCATTTTCAGTGCTC
TCAAGCTTGTGACTAAGAGCGTGGAAGAAACACCATCACTGAATTCCTAT
ATTATATTCGATGATCAACTACAAGAAAGTGGCTTCTTAAACGACTCAAG
ATTGCGAAGGGAATTGGAAGTTCTTGCAAACGCAGGAGTGATTACTTTTG
TCCCAGGAAAAGAATGCCATGAAGTGCAATCGTCTTATATAGCTGTTGGG
GCTTTTGGCCGCCGGGTTCCAGATCAGGAAAATTCGTCCTCTGTCGAAGA
GTTTGTCATTCAGTCAGCTCAGTGTTCGAGCATGTTTGATGTTTTCGGAC
CAGGAGACTTTAGCTCTACGGCTTCCATTACGGGTCCCGAATCATATACA
AATCTCATCTGGGGCTCTAATGTTGCAGCAGCAGGAGTGCTAAGCGTTTT
TCTGCTGATGTCTATCGATCAGAATCGAAAGCTAAACGTTACCGAGACAA
AGAACCTGCTTCGGGGGATGACGAGGACGATCCCCCTAATTGGGAACTTG
CGTACCGGTGAGTTTATCGGGTCTGGACCTGCTCTACCACTCCTTGGCGG
CGCATCATCACTTTCCGATTTGAGGAAGTCTTTCGCAGAACTACCGTCCT
CAAATCCCACATCGAATAACTTCATTCGATTCCTTTCGAATTTGCCCATT
GGGGCTATAATCGGAATTTGTCTAGCAGTTTGCCTTGCCTTGATCTTGAT
TATTGTGGGAGGTATTTTCGCATTTCGGCGCAGCAGGGGTTCAGAGTCAG
GAGATGGGGAATCTACATTCGAAGAAGAGGACATCGAGTTTGCACCATCG
GATGAAAACGAGAATCACGAGACACAACGTGACCGCGCTCTCCAACGCCC
TCCCACAATAATAGACATACAATCACCAATTCCAATTCGTCAAAGGTCGG
GGAGTCGCGGCACAGACAAGAGCCGTCCAGTGCAGTCACAGCCTACTCGC
ATTCCTGTCGTACAACGATTGCTTTCGTTGAACAGAGCGAAGGAATCTCC
AATCCCTAAAGGTGACAAGGCCTCATGGTTTGCTACTCCCAGGAGTCAGA
AACCTGGAAATCTTAGTTTTAACAGATGA

Coding sequence (CDS) from alignment at tig00000860_pilon:613785..615263+

>Ggra8876.t1 ID=Ggra8876.t1|Name=Ggra8876.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000860_pilon:613785..615263+ (Gracilaria gracilis GNS1m male)
ATGTCTTCTGGACCCACAGTAGTCGAGATCTCAGCCGTTAGCTCCAACAA
CTCAGTGGCGGCATCTCCGGTTGTCTGGAATCGAGATCTCCTATTGATAC
CAGAAAAGGTGAACGTGAGCCTTCATACTGATGAAAAAGCAAAAGTCTTC
GTCATTTCTTCCTGGCCCAATATGCATCATATCGAGCTCAAGGATGCGCG
TGTGGATAGCTCTGGTCTCAGCCACATATACGGATCAACTTCTCGCTTCC
CAAATCCTATTTGTGATGATTCCGGAACTCAACTCATGACCTCAATTGTT
GGAGAACATCTAGGCATCGTTCCAAACCATATCACCACCATTCCAGTTCC
TGTTCGGGATTGTGATGAGCCATACACACTCAACGTCATTTTCAGTGCTC
TCAAGCTTGTGACTAAGAGCGTGGAAGAAACACCATCACTGAATTCCTAT
ATTATATTCGATGATCAACTACAAGAAAGTGGCTTCTTAAACGACTCAAG
ATTGCGAAGGGAATTGGAAGTTCTTGCAAACGCAGGAGTGATTACTTTTG
TCCCAGGAAAAGAATGCCATGAAGTGCAATCGTCTTATATAGCTGTTGGG
GCTTTTGGCCGCCGGGTTCCAGATCAGGAAAATTCGTCCTCTGTCGAAGA
GTTTGTCATTCAGTCAGCTCAGTGTTCGAGCATGTTTGATGTTTTCGGAC
CAGGAGACTTTAGCTCTACGGCTTCCATTACGGGTCCCGAATCATATACA
AATCTCATCTGGGGCTCTAATGTTGCAGCAGCAGGAGTGCTAAGCGTTTT
TCTGCTGATGTCTATCGATCAGAATCGAAAGCTAAACGTTACCGAGACAA
AGAACCTGCTTCGGGGGATGACGAGGACGATCCCCCTAATTGGGAACTTG
CGTACCGGTGAGTTTATCGGGTCTGGACCTGCTCTACCACTCCTTGGCGG
CGCATCATCACTTTCCGATTTGAGGAAGTCTTTCGCAGAACTACCGTCCT
CAAATCCCACATCGAATAACTTCATTCGATTCCTTTCGAATTTGCCCATT
GGGGCTATAATCGGAATTTGTCTAGCAGTTTGCCTTGCCTTGATCTTGAT
TATTGTGGGAGGTATTTTCGCATTTCGGCGCAGCAGGGGTTCAGAGTCAG
GAGATGGGGAATCTACATTCGAAGAAGAGGACATCGAGTTTGCACCATCG
GATGAAAACGAGAATCACGAGACACAACGTGACCGCGCTCTCCAACGCCC
TCCCACAATAATAGACATACAATCACCAATTCCAATTCGTCAAAGGTCGG
GGAGTCGCGGCACAGACAAGAGCCGTCCAGTGCAGTCACAGCCTACTCGC
ATTCCTGTCGTACAACGATTGCTTTCGTTGAACAGAGCGAAGGAATCTCC
AATCCCTAAAGGTGACAAGGCCTCATGGTTTGCTACTCCCAGGAGTCAGA
AACCTGGAAATCTTAGTTTTAACAGATGA