Ggra8838.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8838.t1
Unique NameGgra8838.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Homology
BLAST of Ggra8838.t1 vs. uniprot
Match: A0A2V3IUC9 (ESCRT-related protein CHMP1A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUC9_9FLOR)

HSP 1 Score: 345 bits (885), Expect = 1.660e-118
Identity = 203/225 (90.22%), Postives = 211/225 (93.78%), Query Frame = 0
Query:    1 MGLFSRKAPXXXXXXXXXXXXXTLQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTALPGASKAQDNDLMARLNALQGGARP 225
            MGLFSRKAP XXXXXXXXXXXXTLQ+IVFKMRFTSKTIGRQA KSQ+QID+EKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQ+VR+ VSQSM AVTANLDQAL SMDATQIGYTMEQFI QSEDLDLQTKYMDSAIGESTSSSTPQSQVN LLQQIADENNLDVGDRL G +APIGQPTA+ G  K QD DLMARL+ALQGGARP
Sbjct:    1 MGLFSRKAPPXXXXXXXXXXXXTLQDIVFKMRFTSKTIGRQALKSQKQIDVEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQEVRQLVSQSMTAVTANLDQALNSMDATQIGYTMEQFIKQSEDLDLQTKYMDSAIGESTSSSTPQSQVNNLLQQIADENNLDVGDRLSGFNAPIGQPTAVSG-QKVQDTDLMARLDALQGGARP 224          
BLAST of Ggra8838.t1 vs. uniprot
Match: A0A1X6P0R5 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0R5_PORUM)

HSP 1 Score: 167 bits (422), Expect = 3.880e-48
Identity = 115/229 (50.22%), Postives = 151/229 (65.94%), Query Frame = 0
Query:    1 MGLFSRKAPXXXXXXXXXXXXXTLQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAP---IGQPTALPGAS-KAQDNDLMARLNALQGGARP 225
            MGLF +   XXXXXXXXXXXXX++++ +F M+FT+KT+GR A KS   I  EKR+ K A+ K N  GARI+AENAIR H+  L+YL+LQS+LEAV++KL+       V+  M  VTA+L  AL SMD   I  TM+ F  Q EDLDL  K+++ +IGEST+ STP ++V+GLL+Q+A E+ L V D L     P   +G  + +  AS  A   DL AR  AL GG RP
Sbjct:    1 MGLFKKXXXXXXXXXXXXXXXXSMEDTIFNMKFTAKTLGRLATKSNASIATEKRRLKTALEKGNTDGARIYAENAIRAHHTSLNYLRLQSRLEAVSSKLEGHQQMAAVTADMTGVTASLGAALSSMDVNAIARTMDTFEKQFEDLDLSVKFVEGSIGESTALSTPAAEVDGLLEQVAAEHGLKVADELSQPMVPRYGVGSASGVSEASGSAAGTDLEARFAALAGGGRP 229          
BLAST of Ggra8838.t1 vs. uniprot
Match: A0A5J4YP67 (Charged multivesicular body protein 1a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YP67_PORPP)

HSP 1 Score: 157 bits (397), Expect = 1.880e-44
Identity = 109/223 (48.88%), Postives = 147/223 (65.92%), Query Frame = 0
Query:    1 MGLFSR---KAPXXXXXXXXXXXXXTLQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPT-ALPGASKAQDNDLMARLNAL 219
            MGLF +   +APXXXXXXXXXX   +L++ VF MRFT+K + R + K+++ ++ EK+K ++AMAK N+ GARI AENAIR  N+ L+YLKL S+L+AVA+KL  Q   +QV+  M  VT  L  AL +MD  +I  TM+ F  Q EDLD+  KYMD AI ++T+ STPQ+QV+ LL+Q+   N L+  + L       G P  A   AS A+D  L ARL AL
Sbjct:    1 MGLFGKSKKEAPXXXXXXXXXXPAPSLEDTVFNMRFTAKQLARMSQKAEKDVEKEKKKCRDAMAKQNVEGARIFAENAIRQENQALTYLKLASRLDAVASKLDGQMKMQQVTGQMSDVTLALGGALEAMDVEKIARTMDTFEKQFEDLDMTAKYMDGAISDTTAMSTPQNQVDDLLKQVGTANALEYQNMLF-DGTKYGTPAQATAQASSAEDTSLEARLQAL 222          
BLAST of Ggra8838.t1 vs. uniprot
Match: A0A7S0G4U7 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G4U7_9RHOD)

HSP 1 Score: 153 bits (386), Expect = 8.010e-43
Identity = 84/179 (46.93%), Postives = 125/179 (69.83%), Query Frame = 0
Query:   24 LQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAP---IGQPT 199
            L E +F M+FT+K +GR A K+   ++ EK+K K+A+ ++N+ GA+IHAENA+RN  + +SY++LQS+L+AV +KL+A      V+ SM  V+  LD+AL +MD  +I   M+ F  Q E+LDL  +YMDSAIGES +SS PQ++VN LLQQ+ +E+NL+V + + G   P    GQP+
Sbjct:   28 LSETLFNMKFTAKQMGRLAKKAHSSMEAEKKKCKKAIEESNVEGAKIHAENAVRNEKQEISYMRLQSRLDAVVSKLEAHTKMMTVTASMGDVSYKLDEALQTMDINKITAVMDTFEKQFENLDLNAQYMDSAIGESVASSVPQNEVNTLLQQVGEEHNLEVSEIIGGPKIPGTKTGQPS 206          
BLAST of Ggra8838.t1 vs. uniprot
Match: A0A066VGY5 (Uncharacterized protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VGY5_TILAU)

HSP 1 Score: 146 bits (369), Expect = 1.710e-40
Identity = 85/201 (42.29%), Postives = 137/201 (68.16%), Query Frame = 0
Query:   24 LQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTALPGASKA----QDNDLMARLNALQ 220
            L++ +F+++FT+K++ RQA K+ +   +EK K K+A+A+ N  GARI+A NAIR  +E L+ L+L S+++AVA++++     +QV+ SM +V   +D+A+ SM+  +I   M++F TQ ED+D+QT YM+  +G +T+S TPQ QV+ LLQQ+ADEN +++  +L G +A  G+   L  A KA    +DN L  RL AL+
Sbjct:    4 LEKSLFQLKFTAKSLQRQAKKANKDEGLEKAKLKKALAQGNTEGARIYASNAIRKKSEGLNLLRLSSRIDAVASRVETAVTMRQVTGSMASVVKGMDRAMESMNLERISLVMDKFETQFEDMDVQTSYMEGTMGATTASVTPQDQVDLLLQQVADENGIELNHQL-GEAALEGKVAELQQAEKAPEPKEDNKLAERLRALR 203          
BLAST of Ggra8838.t1 vs. uniprot
Match: M2VZX7 (Charged multivesicular body protein 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZX7_GALSU)

HSP 1 Score: 146 bits (368), Expect = 2.420e-40
Identity = 84/196 (42.86%), Postives = 128/196 (65.31%), Query Frame = 0
Query:   24 LQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTALPGASKAQDNDLMARLNAL 219
            L++ + ++R   K +GR A K Q+ I +EKRK KEA+ K N  GARI AENAIRN  + L+Y +LQS+++AV +KL+A    +  + S+  +T +LD+AL SM+  +I   M++F +Q ED+DL+ +Y+D AI ++T+ +TP  QV+ LLQ++ADEN L++ D L G   PI Q +        + +DL AR  AL
Sbjct:    8 LEDQILELRLAEKQLGRAAKKCQKNIQVEKRKCKEALEKGNHDGARIFAENAIRNEKQSLAYFRLQSRVDAVVSKLEAHHKMQTTTNSIRDITVSLDKALQSMNIEKISQVMDKFESQFEDIDLRAQYVDGAISQTTALATPSDQVDALLQKVADENGLELADTLDGL-IPINQLSGEKQKQLQRPDDLEARFAAL 202          
BLAST of Ggra8838.t1 vs. uniprot
Match: A0A4Y2B0C5 (Charged multivesicular body protein 1a n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2B0C5_ARAVE)

HSP 1 Score: 144 bits (363), Expect = 1.180e-39
Identity = 75/197 (38.07%), Postives = 139/197 (70.56%), Query Frame = 0
Query:   24 LQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTALPGASKAQDNDLMARLNALQ 220
            +Q+++F++RF+SK + R + ++++   +++ K K+A+ + N+ GA+I+AENAIR  NE L+YL++ S+++AV++K+Q+    K V+++M +V   LD+A+ SMD  ++   MEQF  Q EDLD+ T  ++ A+G +T++STP +QV+ L+QQ+A+EN LD+ D+L G+ +   +  +    S+++++ L  RL AL+
Sbjct:    4 MQDLLFQLRFSSKQLERLSKRAEKDEKLQRNKIKKAIQQGNMEGAKIYAENAIRKKNEALNYLRMASKIDAVSSKVQSALTMKGVTKNMGSVVKALDKAINSMDLQKVSAVMEQFEQQFEDLDVHTSVVEDAMGSATTTSTPLAQVDSLIQQVAEENGLDIMDQLAGAKSVPTEGLSTASVSRSEEDALTRRLAALR 200          
BLAST of Ggra8838.t1 vs. uniprot
Match: A0A507DT99 (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DT99_9FUNG)

HSP 1 Score: 148 bits (373), Expect = 3.770e-39
Identity = 83/200 (41.50%), Postives = 132/200 (66.00%), Query Frame = 0
Query:   23 TLQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTALPGASKAQDNDLMARLNALQGG 222
            T+ + +F ++FT+KT+ RQA KS +    EK K K+A+ + N+ GARI+A NAIR  NE L+ L+L S+++ VAA++Q     ++VSQSM  V   +++A+ SM+  QI   M++F +Q EDLD+QT+YM+S++G+ST+ STPQ QV  L+QQ+ADEN L++   + G++       A     + + ++L  RL  L+ G
Sbjct:  189 TMDKHLFNLKFTAKTLQRQAKKSAKDEAAEKAKLKKAIQQGNMEGARIYASNAIRKKNESLNLLRLGSRIDGVAARVQTAVTMRKVSQSMAGVVKGMEKAMSSMNLEQISMVMDKFESQFEDLDVQTQYMESSMGQSTAMSTPQDQVEDLMQQVADENGLELQMEMPGAATGTLNAAAGTATVEKEQDELTERLAKLRNG 388          
BLAST of Ggra8838.t1 vs. uniprot
Match: A0A5M6C5U6 (Uncharacterized protein n=18 Tax=Cryptococcaceae TaxID=1884633 RepID=A0A5M6C5U6_9TREE)

HSP 1 Score: 142 bits (359), Expect = 4.860e-39
Identity = 81/197 (41.12%), Postives = 133/197 (67.51%), Query Frame = 0
Query:   24 LQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTALPGASKAQDNDLMARLNALQ 220
            L++ +F+++FT+K++ RQA K+ +    EK K K+A+AK N  GARI+A+NAIR   E L+ L+L S+++AVA++++     +QV+ SM +V   +D+A+ SM+  +I   M++F  Q  DLD+QT YM+S + ++T+ +TPQ QV+ L+QQ+ADE  L+V   L  +  P+ +PT +  A+K +D  L  RL AL+
Sbjct:    4 LEKSLFQLKFTAKSLQRQAKKANKDEISEKNKLKQALAKGNTDGARIYAQNAIRKKTEGLNLLRLASRIDAVASRVETAVTMRQVTNSMGSVVKGMDKAMESMNLERISLVMDKFENQFADLDVQTSYMESTMSDTTALTTPQDQVDSLMQQVADEAGLEVQHGLGEAKVPVKEPT-VGEAAKEEDGKLADRLRALR 199          
BLAST of Ggra8838.t1 vs. uniprot
Match: A0A0G4IWF5 (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IWF5_PLABS)

HSP 1 Score: 142 bits (358), Expect = 6.120e-39
Identity = 82/199 (41.21%), Postives = 127/199 (63.82%), Query Frame = 0
Query:   23 TLQEIVFKMRFTSKTIGRQANKSQRQIDIEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQAQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTKYMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTALPGASKAQDNDLMARLNALQG 221
            +L + VF +RF SK + RQ+ K++++    K K K+AM K N+ GARI+A+NAIR  NE L+YL+L S+++AVAA+       + ++++M  V  N+D+A+ SM+   I  TM++F  Q EDLDL+ +YMD+AIG S++ +TP  QV  L+ Q+ADE+NL+    L        +P  +    + +D+DL  RL  LQG
Sbjct:    2 SLDDYVFNLRFMSKQLARQSVKAEKEEKASKLKCKKAMEKGNMDGARIYAQNAIRQKNEALNYLRLSSRIDAVAARCNTAAKTQTLTRAMGGVVKNMDKAMASMNLEAISSTMDKFEQQFEDLDLRAEYMDNAIGSSSALTTPDDQVQSLMHQVADEHNLEFQSNLNAVGVGKAKPQQV---EEKEDDDLEERLKRLQG 197          
The following BLAST results are available for this feature:
BLAST of Ggra8838.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUC91.660e-11890.22ESCRT-related protein CHMP1A n=1 Tax=Gracilariopsi... [more]
A0A1X6P0R53.880e-4850.22Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YP671.880e-4448.88Charged multivesicular body protein 1a n=1 Tax=Por... [more]
A0A7S0G4U78.010e-4346.93Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A066VGY51.710e-4042.29Uncharacterized protein n=1 Tax=Tilletiaria anomal... [more]
M2VZX72.420e-4042.86Charged multivesicular body protein 1 n=1 Tax=Gald... [more]
A0A4Y2B0C51.180e-3938.07Charged multivesicular body protein 1a n=1 Tax=Ara... [more]
A0A507DT993.770e-3941.50Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A5M6C5U64.860e-3941.12Uncharacterized protein n=18 Tax=Cryptococcaceae T... [more]
A0A0G4IWF56.120e-3941.21Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availableGENE3D6.10.140.1230coord: 15..187
e-value: 1.5E-29
score: 105.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR10476:SF2CHARGED MULTIVESICULAR BODY PROTEIN 1Bcoord: 26..220
IPR005024Snf7 familyPANTHERPTHR10476CHARGED MULTIVESICULAR BODY PROTEINcoord: 26..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:473383..474060 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8838.t1Ggra8838.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 473383..474060 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8838.t1 ID=Ggra8838.t1|Name=Ggra8838.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MGLFSRKAPPPPPPVQQAPPPPTLQEIVFKMRFTSKTIGRQANKSQRQID
IEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQ
AQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTK
YMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTA
LPGASKAQDNDLMARLNALQGGARP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam