Ggra8838.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8838.t1
Unique NameGgra8838.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:473383..474060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705426.1
Preferred nameVPS46
PFAMsSnf7
Max annot lvl2759|Eukaryota
KEGG koko:K12197
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
GOsGO:0000003,GO:0000578,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0007275,GO:0007389,GO:0008104,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009880,GO:0010154,GO:0012505,GO:0015031,GO:0015833,GO:0016192,GO:0016197,GO:0022414,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032509,GO:0033036,GO:0033365,GO:0034613,GO:0040007,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061458,GO:0070727,GO:0071702,GO:0071705,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097708
Evalue6.67e-40
EggNOG OGsCOG5491@1|root,KOG3232@2759|Eukaryota
Descriptionvacuolar transport
COG categoryN
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8838Ggra8838Gracilaria gracilis GNS1m malegenetig00000860_pilon 473383..474060 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8838.t1.stop1Ggra8838.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 473383..473385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8838.t1.CDS1Ggra8838.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 473383..474060 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8838.t1.exon1Ggra8838.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 473383..474060 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8838.t1.start1Ggra8838.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 474058..474060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8838.t1Ggra8838.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 473383..474060 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8838.t1 ID=Ggra8838.t1|Name=Ggra8838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MGLFSRKAPPPPPPVQQAPPPPTLQEIVFKMRFTSKTIGRQANKSQRQID
IEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQ
AQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTK
YMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTA
LPGASKAQDNDLMARLNALQGGARP*
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spliced messenger RNA

>Ggra8838.t1 ID=Ggra8838.t1|Name=Ggra8838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000860_pilon:473383..474060- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTTTTCAGTCGTAAAGCTCCGCCACCGCCGCCGCCCGTGCAGCA
GGCGCCGCCGCCTCCCACGCTTCAAGAAATCGTCTTCAAGATGAGATTCA
CCTCCAAGACGATTGGAAGGCAGGCTAACAAGTCTCAGCGTCAAATCGAC
ATTGAGAAACGTAAAGCGAAGGAGGCCATGGCCAAAAACAACATCGCGGG
CGCCAGAATTCACGCCGAAAATGCTATTCGAAACCATAATGAACACCTTT
CGTACCTCAAGTTACAGAGTCAGTTGGAGGCTGTCGCCGCCAAGTTGCAG
GCCCAGGATGTGCGGAAGCAGGTGTCGCAAAGTATGGTTGCTGTCACCGC
TAACTTGGATCAGGCTTTGGGAAGTATGGATGCTACACAGATTGGATACA
CTATGGAACAGTTTATCACACAGAGTGAGGATTTGGATTTGCAAACCAAA
TACATGGATTCTGCTATCGGGGAATCTACCTCTTCTTCCACTCCACAGTC
TCAGGTCAACGGCTTGTTACAGCAGATTGCGGACGAAAACAACTTGGATG
TAGGAGATAGGCTGATGGGATCTAGCGCGCCCATCGGACAGCCTACTGCT
TTGCCGGGTGCTAGTAAGGCGCAGGATAATGACCTTATGGCACGTCTTAA
CGCTCTGCAAGGTGGAGCTAGACCGTAA
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protein sequence of Ggra8838.t1

>Ggra8838.t1 ID=Ggra8838.t1|Name=Ggra8838.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MGLFSRKAPPPPPPVQQAPPPPTLQEIVFKMRFTSKTIGRQANKSQRQID
IEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQ
AQDVRKQVSQSMVAVTANLDQALGSMDATQIGYTMEQFITQSEDLDLQTK
YMDSAIGESTSSSTPQSQVNGLLQQIADENNLDVGDRLMGSSAPIGQPTA
LPGASKAQDNDLMARLNALQGGARP*
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mRNA from alignment at tig00000860_pilon:473383..474060-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8838.t1 ID=Ggra8838.t1|Name=Ggra8838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000860_pilon:473383..474060- (Gracilaria gracilis GNS1m male)
ATGGGTCTTTTCAGTCGTAAAGCTCCGCCACCGCCGCCGCCCGTGCAGCA
GGCGCCGCCGCCTCCCACGCTTCAAGAAATCGTCTTCAAGATGAGATTCA
CCTCCAAGACGATTGGAAGGCAGGCTAACAAGTCTCAGCGTCAAATCGAC
ATTGAGAAACGTAAAGCGAAGGAGGCCATGGCCAAAAACAACATCGCGGG
CGCCAGAATTCACGCCGAAAATGCTATTCGAAACCATAATGAACACCTTT
CGTACCTCAAGTTACAGAGTCAGTTGGAGGCTGTCGCCGCCAAGTTGCAG
GCCCAGGATGTGCGGAAGCAGGTGTCGCAAAGTATGGTTGCTGTCACCGC
TAACTTGGATCAGGCTTTGGGAAGTATGGATGCTACACAGATTGGATACA
CTATGGAACAGTTTATCACACAGAGTGAGGATTTGGATTTGCAAACCAAA
TACATGGATTCTGCTATCGGGGAATCTACCTCTTCTTCCACTCCACAGTC
TCAGGTCAACGGCTTGTTACAGCAGATTGCGGACGAAAACAACTTGGATG
TAGGAGATAGGCTGATGGGATCTAGCGCGCCCATCGGACAGCCTACTGCT
TTGCCGGGTGCTAGTAAGGCGCAGGATAATGACCTTATGGCACGTCTTAA
CGCTCTGCAAGGTGGAGCTAGACCGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:473383..474060-

>Ggra8838.t1 ID=Ggra8838.t1|Name=Ggra8838.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000860_pilon:473383..474060- (Gracilaria gracilis GNS1m male)
ATGGGTCTTTTCAGTCGTAAAGCTCCGCCACCGCCGCCGCCCGTGCAGCA
GGCGCCGCCGCCTCCCACGCTTCAAGAAATCGTCTTCAAGATGAGATTCA
CCTCCAAGACGATTGGAAGGCAGGCTAACAAGTCTCAGCGTCAAATCGAC
ATTGAGAAACGTAAAGCGAAGGAGGCCATGGCCAAAAACAACATCGCGGG
CGCCAGAATTCACGCCGAAAATGCTATTCGAAACCATAATGAACACCTTT
CGTACCTCAAGTTACAGAGTCAGTTGGAGGCTGTCGCCGCCAAGTTGCAG
GCCCAGGATGTGCGGAAGCAGGTGTCGCAAAGTATGGTTGCTGTCACCGC
TAACTTGGATCAGGCTTTGGGAAGTATGGATGCTACACAGATTGGATACA
CTATGGAACAGTTTATCACACAGAGTGAGGATTTGGATTTGCAAACCAAA
TACATGGATTCTGCTATCGGGGAATCTACCTCTTCTTCCACTCCACAGTC
TCAGGTCAACGGCTTGTTACAGCAGATTGCGGACGAAAACAACTTGGATG
TAGGAGATAGGCTGATGGGATCTAGCGCGCCCATCGGACAGCCTACTGCT
TTGCCGGGTGCTAGTAAGGCGCAGGATAATGACCTTATGGCACGTCTTAA
CGCTCTGCAAGGTGGAGCTAGACCGTAA
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