Ggra8794.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8794.t1
Unique NameGgra8794.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Homology
BLAST of Ggra8794.t1 vs. uniprot
Match: A0A2V3IX96 (RRM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX96_9FLOR)

HSP 1 Score: 435 bits (1119), Expect = 3.640e-148
Identity = 249/421 (59.14%), Postives = 298/421 (70.78%), Query Frame = 0
Query:    1 MDDDWASDGEEEGLGDLSDIPDIDIPPQQRQNPTPPQKPLPSAAHHRPPXXRQNAWTKPIQSQHVRSAVQQP------PNPRGHHRRQNSFPSSFGSKLDRFDSDPGRQQQRAPSAPSITLYVTNLPYETNEQAIGDFFSVNTIQVFGIRLMRHSDTGNIKAALVTIAADHVTKALDTDGKLFGGRTIHVKVDGTDGKRGGRDRDRGERGHNRTPSFGSSFGSRVAA-NGSSRSGAGWNNRGPGHXXXXXXXXXXXXXXXXXXXXXXXXXXKDPTIPTGPPPAGRKKLQLMPRTKPPPGLHVDQRGANAPKAPQTAMPAPGRQENDSFSDQKGSAAPRRVNSTGGDRFN-RNDSNTDKFDLVERRDRGGKPSDESASKWTNMKETNVPRPSSQPASKKEDDSKRPVLLNTFAALELNDSDA 413
            MDDDWAS+GEEEGLGDLSDIPD+D+P Q +  P P   P P A    P   RQNAWTKP QSQ VRSAVQ P      P  R  HRRQNSFP+SFGS L+R      R Q R+ + P+ TLYVTNLPY+T+EQAIGDFF+ +++ V GIRL++H DTGNI+AALVT+ ADHV KAL  DG++FGGRTI+VK+DGTDGKRG R    GER  +R PSFGSSFG+R    NG++RS + W++RGPGH                          KDP+IP GPPPAGRKKLQLMPRTKPPP L VDQR  +  K PQ+AMPAPGRQ+++ FS  +    PRRVNS GG+R + R D ++D+FD V+RRDRG +  D+S +KWTN KET   RPSSQP +KKEDDSKRPVL NTFAAL++ D DA
Sbjct:    1 MDDDWASEGEEEGLGDLSDIPDVDLPVQIK-TPLPEPTPQPPA----PVVPRQNAWTKPNQSQQVRSAVQSPAQHQQQPQGRALHRRQNSFPASFGSNLERPSQPAPRHQPRSHTGPTTTLYVTNLPYQTHEQAIGDFFTASSVHVVGIRLVKHPDTGNIRAALVTVVADHVPKALAVDGRMFGGRTIYVKIDGTDGKRGAR----GERSQSRNPSFGSSFGTRAPPLNGNARSSS-WHDRGPGHSIDSQLTRRASDNRDDRRSRLAPLA-KDPSIPVGPPPAGRKKLQLMPRTKPPPELQVDQRAISQQKPPQSAMPAPGRQDSEKFSQNRAGPPPRRVNSYGGERSSTRGDRSSDRFDRVDRRDRGPRM-DDSRNKWTNSKETATSRPSSQPTAKKEDDSKRPVLQNTFAALDIKDPDA 409          
BLAST of Ggra8794.t1 vs. uniprot
Match: R7Q424 (Possible translation initiation factor eIF4, subunit H n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q424_CHOCR)

HSP 1 Score: 140 bits (352), Expect = 3.510e-34
Identity = 132/361 (36.57%), Postives = 164/361 (45.43%), Query Frame = 0
Query:  100 PGRQQQRAPSAPS-------ITLYVTNLPYETNEQAIGDFFSVNTIQVFGIRLMRHSDTGNIKAALVTIAAD-HVTKALDTDGKLFGGRTIHVKVDGTDGKRGGRDRDRGERGHNRTPSFGSSFGSRVAANGSSRSG--------AGWNNRGPGHXXXXXXXXXXXXXXXXXXXXXXXXXX--------KDPTIPTGPPPAGRKKLQLMPRTKPPPGLHVDQRGANA--PKAPQTAMPAPGRQENDSFSDQKGSAAPRRVNSTGGDRFNRNDSNTDKFDLVERRDRGGK---PSDESASKWTNMKETNV--------------PRPSS---QPASKKEDDSK-RPVLLNTFAALELNDSDA 413
            PG   +R PS+P+        TLYV +LP++T+E  I   F    +    + L RH+DTGNIKAALVTI  + +++  L  DG    GR +HVKVDG     GG  R+R   G      FGS      A   SS  G        +GW +R  G                                   +DPTIPTGPPPAGRKKL L PRTKPPP L VD R  +   P  P +      R EN   SD   + A R+     G R            L E  D   K   P+D    KWT  K+                 P+ +S   Q ++KK+DDSK RPVLLNTFAALE+ND+DA
Sbjct:   23 PGMAPRRQPSSPASAPAGSTTTLYVFHLPFDTSEVEIASLFRHCAVTPADVHLTRHNDTGNIKAALVTIRGEENLSAGLAVDGAKLSGRPVHVKVDGDRRGSGGGQRERSGYG------FGSKDRRMEAMPSSSPHGGQRDSTWSSGWTDRSGGGGFDQSSRGERGVEGRSAGASRGAGVTPRGASEQREDPTIPTGPPPAGRKKLVLKPRTKPPPVLEVDTRAIDGVKPSVPSSVSQPRHRFEN---SDPSKNLAMRQ---NSGPRVT--------APLSEGADPNPKEVTPADPKVEKWTTPKDATAKTQGERWSSAKEGAPQKASGTAQGSNKKDDDSKKRPVLLNTFAALEVNDADA 363          
The following BLAST results are available for this feature:
BLAST of Ggra8794.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX963.640e-14859.14RRM domain-containing protein n=1 Tax=Gracilariops... [more]
R7Q4243.510e-3436.57Possible translation initiation factor eIF4, subun... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 114..185
e-value: 4.7E-5
score: 32.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 115..183
e-value: 2.5E-4
score: 20.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 113..189
score: 9.029867
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 94..191
e-value: 1.3E-12
score: 49.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..342
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 343..365
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..399
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 366..385
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..263
NoneNo IPR availableCDDcd00590RRM_SFcoord: 115..185
e-value: 8.80624E-9
score: 49.9961
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 83..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:140242..141483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8794.t1Ggra8794.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 140242..141483 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8794.t1 ID=Ggra8794.t1|Name=Ggra8794.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MDDDWASDGEEEGLGDLSDIPDIDIPPQQRQNPTPPQKPLPSAAHHRPPP
PRQNAWTKPIQSQHVRSAVQQPPNPRGHHRRQNSFPSSFGSKLDRFDSDP
GRQQQRAPSAPSITLYVTNLPYETNEQAIGDFFSVNTIQVFGIRLMRHSD
TGNIKAALVTIAADHVTKALDTDGKLFGGRTIHVKVDGTDGKRGGRDRDR
GERGHNRTPSFGSSFGSRVAANGSSRSGAGWNNRGPGHSFDSQLTRRSSD
GSGEDRRSRGGSHSKDPTIPTGPPPAGRKKLQLMPRTKPPPGLHVDQRGA
NAPKAPQTAMPAPGRQENDSFSDQKGSAAPRRVNSTGGDRFNRNDSNTDK
FDLVERRDRGGKPSDESASKWTNMKETNVPRPSSQPASKKEDDSKRPVLL
NTFAALELNDSDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf