Ggra8794.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8794.t1
Unique Name	Ggra8794.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	414

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:140242..141483 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005848501.1
PFAMs	RRM_1
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03258
KEGG Pathway	ko03013,ko04150,ko04151,ko05205,map03013,map04150,map04151,map05205
Evalue	1.63e-05
EggNOG OGs	KOG0118@1\|root,KOG0118@2759\|Eukaryota,38124@33090\|Viridiplantae,34MXC@3041\|Chlorophyta
Description	RNA recognition motif
COG category	A
BRITE	ko00000,ko00001,ko03012,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8794	Ggra8794	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 140242..141483 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8794.t1.start1	Ggra8794.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 140242..140244 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8794.t1.CDS1	Ggra8794.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 140242..141483 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8794.t1.exon1	Ggra8794.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 140242..141483 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8794.t1.stop1	Ggra8794.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 141481..141483 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8794.t1	Ggra8794.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 140242..141483 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:140242..141483+
coding sequence from alignment at tig00000860_pilon:140242..141483+

mRNA sequence

>Ggra8794.t1 ID=Ggra8794.t1|Name=Ggra8794.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MDDDWASDGEEEGLGDLSDIPDIDIPPQQRQNPTPPQKPLPSAAHHRPPP
PRQNAWTKPIQSQHVRSAVQQPPNPRGHHRRQNSFPSSFGSKLDRFDSDP
GRQQQRAPSAPSITLYVTNLPYETNEQAIGDFFSVNTIQVFGIRLMRHSD
TGNIKAALVTIAADHVTKALDTDGKLFGGRTIHVKVDGTDGKRGGRDRDR
GERGHNRTPSFGSSFGSRVAANGSSRSGAGWNNRGPGHSFDSQLTRRSSD
GSGEDRRSRGGSHSKDPTIPTGPPPAGRKKLQLMPRTKPPPGLHVDQRGA
NAPKAPQTAMPAPGRQENDSFSDQKGSAAPRRVNSTGGDRFNRNDSNTDK
FDLVERRDRGGKPSDESASKWTNMKETNVPRPSSQPASKKEDDSKRPVLL
NTFAALELNDSDA*

spliced messenger RNA

>Ggra8794.t1 ID=Ggra8794.t1|Name=Ggra8794.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000860_pilon:140242..141483+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGACGACTGGGCGTCCGACGGGGAAGAGGAAGGTCTTGGTGACCT
TTCCGATATCCCGGACATCGATATTCCGCCCCAGCAGCGCCAGAATCCCA
CACCCCCACAGAAACCTCTGCCTTCGGCCGCTCATCACCGCCCGCCGCCG
CCGCGCCAGAACGCCTGGACCAAGCCTATCCAATCTCAGCATGTTCGCTC
CGCCGTTCAGCAACCGCCGAACCCTCGCGGCCATCATCGCAGACAGAACT
CGTTCCCATCCTCTTTCGGCTCCAAGCTCGACAGATTTGACTCGGATCCT
GGCAGACAACAACAGCGAGCGCCTAGTGCGCCCTCCATCACTCTCTACGT
TACAAATCTTCCGTACGAGACCAATGAGCAAGCGATTGGTGACTTCTTCT
CCGTCAACACCATTCAGGTTTTTGGCATCCGCCTCATGAGACATTCCGAT
ACTGGAAATATCAAGGCTGCCCTTGTCACCATAGCTGCCGATCACGTCAC
CAAGGCCCTCGACACGGACGGAAAGTTATTCGGTGGCAGAACAATACATG
TCAAAGTTGACGGAACAGACGGCAAGCGCGGAGGTCGAGACAGAGATCGT
GGCGAACGCGGCCATAACAGAACTCCGTCATTCGGATCCTCGTTCGGATC
CCGAGTTGCGGCAAACGGCAGCTCACGTTCTGGTGCAGGGTGGAATAACC
GTGGTCCTGGCCACAGCTTTGACAGTCAACTCACCCGACGTTCCAGTGAT
GGCTCTGGCGAAGATCGACGGTCTCGCGGAGGTTCTCACTCGAAAGATCC
TACTATCCCTACAGGTCCCCCGCCAGCTGGCCGAAAGAAGCTTCAGTTGA
TGCCTCGTACGAAGCCCCCACCTGGTTTACACGTTGATCAAAGAGGTGCA
AATGCCCCCAAAGCGCCGCAAACAGCAATGCCTGCCCCAGGGAGGCAAGA
AAACGACAGCTTTTCCGACCAGAAGGGCAGTGCTGCCCCCCGAAGAGTGA
ATAGTACTGGAGGAGACCGATTCAATCGAAACGACAGTAATACCGACAAG
TTTGATTTGGTTGAAAGACGTGATCGAGGTGGCAAACCATCTGACGAATC
AGCCAGCAAGTGGACCAATATGAAAGAAACCAACGTACCTCGACCGTCAT
CCCAACCGGCCTCAAAGAAGGAGGATGATTCAAAGAGACCAGTTCTACTG
AACACTTTTGCAGCACTTGAACTCAATGACTCTGATGCGTAA

protein sequence of Ggra8794.t1

>Ggra8794.t1 ID=Ggra8794.t1|Name=Ggra8794.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MDDDWASDGEEEGLGDLSDIPDIDIPPQQRQNPTPPQKPLPSAAHHRPPP
PRQNAWTKPIQSQHVRSAVQQPPNPRGHHRRQNSFPSSFGSKLDRFDSDP
GRQQQRAPSAPSITLYVTNLPYETNEQAIGDFFSVNTIQVFGIRLMRHSD
TGNIKAALVTIAADHVTKALDTDGKLFGGRTIHVKVDGTDGKRGGRDRDR
GERGHNRTPSFGSSFGSRVAANGSSRSGAGWNNRGPGHSFDSQLTRRSSD
GSGEDRRSRGGSHSKDPTIPTGPPPAGRKKLQLMPRTKPPPGLHVDQRGA
NAPKAPQTAMPAPGRQENDSFSDQKGSAAPRRVNSTGGDRFNRNDSNTDK
FDLVERRDRGGKPSDESASKWTNMKETNVPRPSSQPASKKEDDSKRPVLL
NTFAALELNDSDA*

mRNA from alignment at tig00000860_pilon:140242..141483+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8794.t1 ID=Ggra8794.t1|Name=Ggra8794.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000860_pilon:140242..141483+ (Gracilaria gracilis GNS1m male)
ATGGATGACGACTGGGCGTCCGACGGGGAAGAGGAAGGTCTTGGTGACCT
TTCCGATATCCCGGACATCGATATTCCGCCCCAGCAGCGCCAGAATCCCA
CACCCCCACAGAAACCTCTGCCTTCGGCCGCTCATCACCGCCCGCCGCCG
CCGCGCCAGAACGCCTGGACCAAGCCTATCCAATCTCAGCATGTTCGCTC
CGCCGTTCAGCAACCGCCGAACCCTCGCGGCCATCATCGCAGACAGAACT
CGTTCCCATCCTCTTTCGGCTCCAAGCTCGACAGATTTGACTCGGATCCT
GGCAGACAACAACAGCGAGCGCCTAGTGCGCCCTCCATCACTCTCTACGT
TACAAATCTTCCGTACGAGACCAATGAGCAAGCGATTGGTGACTTCTTCT
CCGTCAACACCATTCAGGTTTTTGGCATCCGCCTCATGAGACATTCCGAT
ACTGGAAATATCAAGGCTGCCCTTGTCACCATAGCTGCCGATCACGTCAC
CAAGGCCCTCGACACGGACGGAAAGTTATTCGGTGGCAGAACAATACATG
TCAAAGTTGACGGAACAGACGGCAAGCGCGGAGGTCGAGACAGAGATCGT
GGCGAACGCGGCCATAACAGAACTCCGTCATTCGGATCCTCGTTCGGATC
CCGAGTTGCGGCAAACGGCAGCTCACGTTCTGGTGCAGGGTGGAATAACC
GTGGTCCTGGCCACAGCTTTGACAGTCAACTCACCCGACGTTCCAGTGAT
GGCTCTGGCGAAGATCGACGGTCTCGCGGAGGTTCTCACTCGAAAGATCC
TACTATCCCTACAGGTCCCCCGCCAGCTGGCCGAAAGAAGCTTCAGTTGA
TGCCTCGTACGAAGCCCCCACCTGGTTTACACGTTGATCAAAGAGGTGCA
AATGCCCCCAAAGCGCCGCAAACAGCAATGCCTGCCCCAGGGAGGCAAGA
AAACGACAGCTTTTCCGACCAGAAGGGCAGTGCTGCCCCCCGAAGAGTGA
ATAGTACTGGAGGAGACCGATTCAATCGAAACGACAGTAATACCGACAAG
TTTGATTTGGTTGAAAGACGTGATCGAGGTGGCAAACCATCTGACGAATC
AGCCAGCAAGTGGACCAATATGAAAGAAACCAACGTACCTCGACCGTCAT
CCCAACCGGCCTCAAAGAAGGAGGATGATTCAAAGAGACCAGTTCTACTG
AACACTTTTGCAGCACTTGAACTCAATGACTCTGATGCGTAA

Coding sequence (CDS) from alignment at tig00000860_pilon:140242..141483+

>Ggra8794.t1 ID=Ggra8794.t1|Name=Ggra8794.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000860_pilon:140242..141483+ (Gracilaria gracilis GNS1m male)
ATGGATGACGACTGGGCGTCCGACGGGGAAGAGGAAGGTCTTGGTGACCT
TTCCGATATCCCGGACATCGATATTCCGCCCCAGCAGCGCCAGAATCCCA
CACCCCCACAGAAACCTCTGCCTTCGGCCGCTCATCACCGCCCGCCGCCG
CCGCGCCAGAACGCCTGGACCAAGCCTATCCAATCTCAGCATGTTCGCTC
CGCCGTTCAGCAACCGCCGAACCCTCGCGGCCATCATCGCAGACAGAACT
CGTTCCCATCCTCTTTCGGCTCCAAGCTCGACAGATTTGACTCGGATCCT
GGCAGACAACAACAGCGAGCGCCTAGTGCGCCCTCCATCACTCTCTACGT
TACAAATCTTCCGTACGAGACCAATGAGCAAGCGATTGGTGACTTCTTCT
CCGTCAACACCATTCAGGTTTTTGGCATCCGCCTCATGAGACATTCCGAT
ACTGGAAATATCAAGGCTGCCCTTGTCACCATAGCTGCCGATCACGTCAC
CAAGGCCCTCGACACGGACGGAAAGTTATTCGGTGGCAGAACAATACATG
TCAAAGTTGACGGAACAGACGGCAAGCGCGGAGGTCGAGACAGAGATCGT
GGCGAACGCGGCCATAACAGAACTCCGTCATTCGGATCCTCGTTCGGATC
CCGAGTTGCGGCAAACGGCAGCTCACGTTCTGGTGCAGGGTGGAATAACC
GTGGTCCTGGCCACAGCTTTGACAGTCAACTCACCCGACGTTCCAGTGAT
GGCTCTGGCGAAGATCGACGGTCTCGCGGAGGTTCTCACTCGAAAGATCC
TACTATCCCTACAGGTCCCCCGCCAGCTGGCCGAAAGAAGCTTCAGTTGA
TGCCTCGTACGAAGCCCCCACCTGGTTTACACGTTGATCAAAGAGGTGCA
AATGCCCCCAAAGCGCCGCAAACAGCAATGCCTGCCCCAGGGAGGCAAGA
AAACGACAGCTTTTCCGACCAGAAGGGCAGTGCTGCCCCCCGAAGAGTGA
ATAGTACTGGAGGAGACCGATTCAATCGAAACGACAGTAATACCGACAAG
TTTGATTTGGTTGAAAGACGTGATCGAGGTGGCAAACCATCTGACGAATC
AGCCAGCAAGTGGACCAATATGAAAGAAACCAACGTACCTCGACCGTCAT
CCCAACCGGCCTCAAAGAAGGAGGATGATTCAAAGAGACCAGTTCTACTG
AACACTTTTGCAGCACTTGAACTCAATGACTCTGATGCGTAA